Wall clock time and date at job start Tue Mar 31 2020 13:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46853 * 239.99704 * 3 2 1 5 5 H 1.48497 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46905 * 119.99757 * 3 2 1 7 7 C 1.40033 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00198 * 170.18467 * 7 2 1 9 9 C 1.41540 * 120.00022 * 350.18062 * 7 2 1 10 10 C 1.41174 * 120.99519 * 151.67685 * 9 7 2 11 11 C 1.37589 * 119.01462 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11364 * 359.74626 * 11 10 9 13 13 C 1.32474 * 122.22698 * 0.52595 * 12 11 10 14 14 N 1.39470 * 119.58116 * 179.74760 * 13 12 11 15 15 C 1.34783 * 119.99477 * 5.09840 * 14 13 12 16 16 O 1.21265 * 120.00389 * 354.97216 * 15 14 13 17 17 C 1.50706 * 119.99239 * 174.97654 * 15 14 13 18 18 C 1.50700 * 109.46654 * 179.97438 * 17 15 14 19 19 C 1.38256 * 120.03437 * 269.97823 * 18 17 15 20 20 C 1.38100 * 119.93514 * 180.02562 * 19 18 17 21 21 C 1.38500 * 120.21927 * 0.02562 * 20 19 18 22 22 C 1.38222 * 119.84488 * 359.67385 * 21 20 19 23 23 C 1.38100 * 120.03332 * 89.99647 * 18 17 15 24 24 C 1.51375 * 109.75600 * 179.81303 * 22 21 20 25 25 C 1.54348 * 105.23976 * 343.23723 * 24 22 21 26 26 C 1.51366 * 130.39266 * 179.97438 * 21 20 19 27 27 C 1.38601 * 120.84146 * 359.47479 * 13 12 11 28 28 H 0.97000 * 120.00482 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.49200 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.44127 * 179.97438 * 11 10 9 31 31 H 0.96999 * 120.00058 * 185.09366 * 14 13 12 32 32 H 1.08996 * 109.47255 * 60.00210 * 17 15 14 33 33 H 1.08999 * 109.47060 * 299.99160 * 17 15 14 34 34 H 1.08000 * 120.03250 * 0.04413 * 19 18 17 35 35 H 1.08005 * 119.89099 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.89117 * 359.97438 * 23 18 17 37 37 H 1.08997 * 110.46327 * 224.18163 * 24 22 21 38 38 H 1.09001 * 110.15040 * 102.12168 * 24 22 21 39 39 H 1.09005 * 110.81310 * 267.88423 * 25 24 22 40 40 H 1.08997 * 110.99250 * 144.41490 * 25 24 22 41 41 H 1.08996 * 110.30359 * 316.10204 * 26 21 20 42 42 H 1.09003 * 110.30482 * 78.25457 * 26 21 20 43 43 H 1.07993 * 120.60509 * 180.27607 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0757 -1.2197 -0.1589 9 6 1.3154 -2.4294 0.2101 10 6 1.7908 -3.6402 -0.3385 11 6 1.0854 -4.7991 -0.1096 12 7 -0.0188 -4.7941 0.6151 13 6 -0.5094 -3.6846 1.1474 14 7 -1.6829 -3.7421 1.8990 15 6 -2.2541 -4.9332 2.1664 16 8 -1.8006 -5.9465 1.6785 17 6 -3.4567 -5.0057 3.0719 18 6 -3.8987 -6.4401 3.2059 19 6 -4.8226 -6.9650 2.3214 20 6 -5.2267 -8.2797 2.4464 21 6 -4.7098 -9.0748 3.4558 22 6 -3.7815 -8.5519 4.3362 23 6 -3.3817 -7.2316 4.2126 24 6 -3.3772 -9.6092 5.3413 25 6 -4.4674 -10.6976 5.2458 26 6 -4.9850 -10.5224 3.8023 27 6 0.1316 -2.4684 0.9717 28 1 -0.4851 0.8400 -0.0004 29 1 2.6948 -3.6565 -0.9292 30 1 1.4427 -5.7292 -0.5264 31 1 -2.0878 -2.9249 2.2293 32 1 -4.2676 -4.4142 2.6470 33 1 -3.1959 -4.6122 4.0544 34 1 -5.2277 -6.3477 1.5333 35 1 -5.9488 -8.6889 1.7553 36 1 -2.6599 -6.8209 4.9031 37 1 -3.3495 -9.1886 6.3465 38 1 -2.4042 -10.0244 5.0787 39 1 -5.2631 -10.5133 5.9677 40 1 -4.0410 -11.6908 5.3867 41 1 -6.0550 -10.7253 3.7569 42 1 -4.4449 -11.1830 3.1241 43 1 -0.2694 -1.5670 1.4111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:28 Heat of formation + Delta-G solvation = -1.122093 kcal Electronic energy + Delta-G solvation = -25330.833994 eV Core-core repulsion = 21725.292574 eV Total energy + Delta-G solvation = -3605.541421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45586 -40.80988 -39.51860 -36.89314 -36.06263 -35.43873 -33.06140 -32.44821 -31.62243 -30.34272 -28.69315 -27.91578 -27.22604 -23.92619 -23.74234 -23.21345 -21.66740 -21.65022 -20.75638 -19.45343 -18.41910 -17.49922 -17.12610 -16.94806 -16.74945 -16.23668 -16.07362 -15.85163 -15.76968 -15.61251 -15.05607 -14.56914 -14.37277 -14.30538 -14.13101 -13.89046 -13.70514 -13.33362 -13.22406 -12.88458 -12.84855 -12.69092 -12.52375 -12.17856 -12.08072 -12.01727 -11.92355 -11.70929 -11.60171 -11.46192 -11.17022 -10.98881 -9.91919 -9.68399 -9.60155 -9.27438 -8.87317 -8.59429 -6.58305 0.38069 0.49953 0.73730 0.99680 1.41233 1.52387 1.55763 1.90949 2.18038 2.20941 2.81866 2.85754 3.46305 3.67754 3.70962 3.74719 3.87554 4.10655 4.16016 4.18665 4.29256 4.33923 4.51999 4.59175 4.60951 4.73286 4.75035 4.81611 4.85394 4.90563 4.92895 4.95245 5.08800 5.08903 5.22532 5.23899 5.29641 5.36212 5.46559 5.51242 5.64557 5.66573 5.72454 5.91642 6.11855 6.15887 6.48593 6.61259 6.78594 6.83607 7.34491 7.83340 8.30000 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.002348 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.713744 B =11924.549103 C =12257.682319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.487 4.487 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.295 4.295 11 C 0.110 3.890 12 N -0.577 5.577 13 C 0.333 3.667 14 N -0.654 5.654 15 C 0.496 3.504 16 O -0.521 6.521 17 C -0.088 4.088 18 C -0.077 4.077 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.084 4.084 25 C -0.113 4.113 26 C -0.081 4.081 27 C -0.254 4.254 28 H 0.291 0.709 29 H 0.116 0.884 30 H 0.147 0.853 31 H 0.424 0.576 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 -10.082 10.782 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.518 4.518 8 H 0.101 0.899 9 C 0.105 3.895 10 C -0.319 4.319 11 C -0.044 4.044 12 N -0.297 5.297 13 C 0.107 3.893 14 N -0.302 5.302 15 C 0.283 3.717 16 O -0.393 6.393 17 C -0.127 4.127 18 C -0.078 4.078 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.150 4.150 26 C -0.118 4.118 27 C -0.280 4.280 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.165 0.835 31 H 0.262 0.738 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.578 -11.510 10.630 20.092 hybrid contribution 0.905 2.099 -0.527 2.346 sum -11.673 -9.411 10.102 18.080 Atomic orbital electron populations 1.69775 1.08872 1.30887 1.34998 1.26807 0.95719 1.04480 0.90914 0.85133 0.78645 0.75183 0.80035 1.18602 1.18984 1.18346 1.19817 0.96160 0.90910 1.44869 0.89911 1.18035 0.91148 0.93271 0.87065 1.22122 1.05265 0.94491 1.10008 1.22203 0.90484 0.97448 0.94237 1.67363 1.16275 1.28903 1.17151 1.18490 0.87933 0.90256 0.92618 1.43540 1.23718 1.10644 1.52253 1.21509 0.85525 0.82668 0.82023 1.90771 1.63110 1.35165 1.50244 1.20704 0.95413 0.95472 1.01130 1.19319 0.97299 0.95136 0.96008 1.21107 0.98033 0.96114 0.98517 1.20830 1.01041 0.93470 0.98270 1.20994 0.97370 0.97330 0.95709 1.20910 0.97676 0.94237 0.98696 1.20643 0.99719 0.93531 0.98988 1.21126 0.99719 0.93693 0.97592 1.22307 0.97836 0.99019 0.95824 1.21119 1.02559 0.90652 0.97487 1.21596 1.01950 0.95769 1.08637 0.89763 0.86624 0.83537 0.73798 0.85141 0.85390 0.85236 0.84594 0.86218 0.89779 0.90581 0.90024 0.88824 0.89332 0.90082 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.24 10.83 21.84 0.24 -40.00 16 2 C 0.04 1.77 5.30 85.29 0.45 2.22 16 3 Si 0.99 36.07 29.57 68.60 2.03 38.10 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.49 -25.38 9.13 23.52 0.21 -25.16 16 8 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 9 C 0.11 6.12 5.58 -21.11 -0.12 6.00 16 10 C -0.30 -14.94 9.90 22.84 0.23 -14.72 16 11 C 0.11 5.47 11.15 84.50 0.94 6.41 16 12 N -0.58 -30.45 7.85 -193.53 -1.52 -31.97 16 13 C 0.33 16.51 7.42 132.75 0.98 17.49 16 14 N -0.65 -25.39 5.39 -308.65 -1.66 -27.05 16 15 C 0.50 18.46 7.78 87.66 0.68 19.15 16 16 O -0.52 -24.69 14.29 -2.98 -0.04 -24.73 16 17 C -0.09 -2.17 5.83 29.10 0.17 -2.00 16 18 C -0.08 -2.14 4.37 -19.89 -0.09 -2.23 16 19 C -0.12 -3.19 9.70 22.24 0.22 -2.97 16 20 C -0.12 -2.89 10.04 22.30 0.22 -2.67 16 21 C -0.11 -2.70 6.14 -19.59 -0.12 -2.82 16 22 C -0.12 -2.89 6.14 -19.59 -0.12 -3.01 16 23 C -0.11 -3.05 9.70 22.30 0.22 -2.83 16 24 C -0.08 -1.56 6.77 30.52 0.21 -1.35 16 25 C -0.11 -1.54 7.08 31.51 0.22 -1.32 16 26 C -0.08 -1.35 6.77 30.52 0.21 -1.14 16 27 C -0.25 -13.18 8.59 22.99 0.20 -12.99 16 28 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 29 H 0.12 5.35 8.06 -2.91 -0.02 5.32 16 30 H 0.15 6.32 8.06 -2.91 -0.02 6.30 16 31 H 0.42 13.06 8.70 -92.71 -0.81 12.25 16 32 H 0.13 2.43 8.09 -2.39 -0.02 2.41 16 33 H 0.13 2.44 8.09 -2.39 -0.02 2.42 16 34 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 36 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.13 6.48 6.27 -2.91 -0.02 6.46 16 Total: -1.00 -72.07 363.07 3.99 -68.09 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: 0.23 Total: 41.48 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 4.72 Total: -23.93 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -2.95 Total: -99.02 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -72.07 3.99 -68.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.964 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds