Wall clock time and date at job start Tue Mar 31 2020 13:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48502 * 109.47103 * 269.99883 * 3 2 1 5 5 H 1.48497 * 109.47226 * 29.99555 * 3 2 1 6 6 H 1.48496 * 109.47522 * 149.99711 * 3 2 1 7 7 C 1.40035 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00289 * 197.36108 * 7 2 1 9 9 C 1.41542 * 119.99977 * 17.36869 * 7 2 1 10 10 C 1.41170 * 120.99756 * 202.41246 * 9 7 2 11 11 C 1.37591 * 119.01608 * 180.02562 * 10 9 7 12 12 N 1.32076 * 121.10955 * 359.97100 * 11 10 9 13 13 C 1.32472 * 122.23246 * 0.02680 * 12 11 10 14 14 N 1.39467 * 119.57913 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00055 * 3.30811 * 14 13 12 16 16 O 1.21273 * 120.00298 * 4.60542 * 15 14 13 17 17 C 1.50704 * 120.00205 * 184.61005 * 15 14 13 18 18 C 1.50700 * 112.84825 * 57.96501 * 17 15 14 19 19 C 1.38241 * 119.99792 * 111.55629 * 18 17 15 20 20 C 1.38235 * 119.99546 * 179.78731 * 19 18 17 21 21 C 1.38231 * 120.00383 * 0.46457 * 20 19 18 22 22 C 1.38237 * 119.99884 * 359.76532 * 21 20 19 23 23 C 1.38236 * 120.00174 * 0.02789 * 22 21 20 24 24 C 1.53781 * 113.61071 * 286.66125 * 17 15 14 25 25 C 1.53778 * 87.08206 * 270.88039 * 24 17 15 26 26 C 1.53777 * 113.61775 * 189.16557 * 17 15 14 27 27 C 1.38597 * 120.83823 * 0.27005 * 13 12 11 28 28 H 0.97003 * 120.00304 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.49154 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.44503 * 179.97438 * 11 10 9 31 31 H 0.97001 * 120.00012 * 183.58006 * 14 13 12 32 32 H 1.07997 * 119.99656 * 359.97438 * 19 18 17 33 33 H 1.08000 * 119.99485 * 180.25680 * 20 19 18 34 34 H 1.08000 * 120.00084 * 179.79309 * 21 20 19 35 35 H 1.08003 * 119.99872 * 180.02562 * 22 21 20 36 36 H 1.07993 * 120.00079 * 179.97438 * 23 22 21 37 37 H 1.08998 * 113.61642 * 25.43407 * 24 17 15 38 38 H 1.09008 * 113.60959 * 156.33068 * 24 17 15 39 39 H 1.08999 * 113.61522 * 220.01887 * 25 24 17 40 40 H 1.08997 * 113.61039 * 89.11512 * 25 24 17 41 41 H 1.08998 * 113.61498 * 203.66900 * 26 17 15 42 42 H 1.09002 * 113.60900 * 334.48096 * 26 17 15 43 43 H 1.08001 * 120.59953 * 179.70026 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5389 1.4403 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0507 -1.2340 0.2796 9 6 1.3483 -2.4107 -0.3648 10 6 1.8371 -3.6668 0.0551 11 6 1.1643 -4.8055 -0.3242 12 7 0.0759 -4.7388 -1.0694 13 6 -0.4234 -3.5858 -1.4893 14 7 -1.5759 -3.5799 -2.2746 15 6 -2.2123 -4.7365 -2.5462 16 8 -1.8322 -5.7711 -2.0404 17 6 -3.3962 -4.7442 -3.4787 18 6 -3.0680 -4.2013 -4.8456 19 6 -3.0578 -5.0454 -5.9404 20 6 -2.7611 -4.5465 -7.1950 21 6 -2.4651 -3.2056 -7.3533 22 6 -2.4706 -2.3625 -6.2579 23 6 -2.7715 -2.8604 -5.0039 24 6 -4.6691 -4.1397 -2.8630 25 6 -4.9968 -5.5517 -2.3496 26 6 -4.1449 -6.0870 -3.5126 27 6 0.1885 -2.3858 -1.1631 28 1 -0.4851 0.8400 -0.0004 29 1 2.7258 -3.7329 0.6650 30 1 1.5324 -5.7701 -0.0072 31 1 -1.9173 -2.7437 -2.6285 32 1 -3.2847 -6.0939 -5.8159 33 1 -2.7572 -5.2051 -8.0509 34 1 -2.2299 -2.8165 -8.3330 35 1 -2.2397 -1.3147 -6.3817 36 1 -2.7754 -2.2018 -4.1480 37 1 -4.4707 -3.4210 -2.0678 38 1 -5.3783 -3.7686 -3.6030 39 1 -6.0529 -5.8102 -2.4268 40 1 -4.5780 -5.7669 -1.3665 41 1 -4.7107 -6.2484 -4.4302 42 1 -3.5229 -6.9406 -3.2432 43 1 -0.2191 -1.4483 -1.5115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532180968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:06 Heat of formation + Delta-G solvation = 48.267373 kcal Electronic energy + Delta-G solvation = -26662.420785 eV Core-core repulsion = 23059.021052 eV Total energy + Delta-G solvation = -3603.399733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95973 -38.93962 -38.13689 -36.72330 -34.34936 -33.78077 -31.29928 -30.97590 -30.54385 -28.72122 -26.13417 -25.92950 -25.77363 -22.66716 -22.28739 -21.93769 -21.55016 -20.41078 -18.76314 -17.73869 -17.32187 -16.59522 -15.77720 -15.41801 -15.32266 -14.94023 -14.77277 -14.43763 -14.20933 -13.96920 -13.76957 -13.44981 -13.31683 -12.86412 -12.72860 -12.61966 -12.44814 -12.23027 -11.85155 -11.61604 -11.45551 -11.24829 -11.17364 -10.93084 -10.82285 -10.43535 -10.29211 -10.28289 -10.15093 -9.74320 -9.48500 -9.36458 -8.94331 -8.64919 -8.02184 -7.72703 -7.03306 -6.83207 -4.63043 1.28621 1.37555 2.54041 2.76836 2.99854 3.03239 3.18418 3.41657 3.52964 3.82480 3.85911 4.36919 4.60452 4.61514 4.70230 4.78447 4.87910 4.97664 5.06240 5.09130 5.39839 5.48943 5.58209 5.63871 5.68331 5.71439 5.89036 5.92922 5.98357 6.00399 6.09101 6.12993 6.35519 6.45637 6.48048 6.55764 6.58555 6.65487 6.80379 6.93065 6.95454 7.09173 7.38577 7.45360 7.76303 7.92256 8.20325 8.41168 8.69175 8.72752 8.88745 9.68911 10.03333 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.003972 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.596540 B = 7048.277589 C = 8064.512255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.144 3.856 10 C -0.286 4.286 11 C 0.120 3.880 12 N -0.556 5.556 13 C 0.338 3.662 14 N -0.653 5.653 15 C 0.530 3.470 16 O -0.474 6.474 17 C -0.072 4.072 18 C -0.060 4.060 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.116 4.116 27 C -0.246 4.246 28 H 0.282 0.718 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.404 0.596 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -2.169 -11.240 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.310 4.310 11 C -0.035 4.035 12 N -0.275 5.275 13 C 0.114 3.886 14 N -0.299 5.299 15 C 0.313 3.687 16 O -0.344 6.344 17 C -0.075 4.075 18 C -0.061 4.061 19 C -0.129 4.129 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.158 4.158 25 C -0.176 4.176 26 C -0.154 4.154 27 C -0.271 4.271 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.240 0.760 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.177 -3.595 -11.121 15.498 hybrid contribution 0.715 2.190 0.079 2.306 sum -9.462 -1.405 -11.042 14.609 Atomic orbital electron populations 1.69783 1.07724 1.29400 1.34251 1.25962 0.94748 1.01507 0.91825 0.86261 0.80567 0.80214 0.79442 1.19143 1.20192 1.18445 1.19599 0.98119 0.90766 1.40084 0.89932 1.17553 0.89859 0.92268 0.86795 1.21874 1.05117 0.93809 1.10176 1.21751 0.90837 0.96839 0.94026 1.67194 1.15162 1.26415 1.18723 1.18184 0.86969 0.90871 0.92587 1.43464 1.25938 1.09749 1.50792 1.19696 0.83181 0.84168 0.81641 1.90758 1.63634 1.31197 1.48776 1.21044 0.94200 1.00090 0.92210 1.19449 0.99508 0.93637 0.93456 1.21055 1.00029 0.99683 0.92103 1.21118 0.99902 0.95603 0.97105 1.21141 1.00465 0.93901 0.98753 1.21132 0.99510 0.99970 0.92565 1.20994 0.99643 0.94827 0.97558 1.22976 0.94831 0.97700 1.00275 1.22816 1.00029 0.95622 0.99175 1.22875 0.97628 0.95981 0.98883 1.21549 1.02510 0.95559 1.07502 0.90708 0.88008 0.85916 0.75975 0.85717 0.86115 0.86208 0.85850 0.86240 0.90717 0.89046 0.91052 0.89601 0.89339 0.89562 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.23 10.88 55.55 0.60 -18.63 16 2 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 3 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.69 9.12 -37.65 -0.34 -12.03 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 9 C 0.14 3.79 5.61 -106.55 -0.60 3.20 16 10 C -0.29 -7.09 9.90 -38.71 -0.38 -7.47 16 11 C 0.12 2.92 11.15 -17.68 -0.20 2.72 16 12 N -0.56 -14.40 7.86 -12.52 -0.10 -14.50 16 13 C 0.34 8.35 7.41 -154.70 -1.15 7.21 16 14 N -0.65 -13.28 5.17 -11.49 -0.06 -13.34 16 15 C 0.53 10.31 6.47 -10.98 -0.07 10.24 16 16 O -0.47 -11.04 14.16 5.56 0.08 -10.96 16 17 C -0.07 -1.03 0.96 -156.00 -0.15 -1.18 16 18 C -0.06 -0.81 4.86 -104.62 -0.51 -1.32 16 19 C -0.11 -1.35 9.04 -39.58 -0.36 -1.71 16 20 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 21 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 22 C -0.11 -1.32 10.05 -39.58 -0.40 -1.72 16 23 C -0.11 -1.45 8.83 -39.58 -0.35 -1.80 16 24 C -0.12 -1.45 7.07 -25.92 -0.18 -1.63 16 25 C -0.14 -1.68 7.80 -25.92 -0.20 -1.88 16 26 C -0.12 -1.46 6.10 -25.92 -0.16 -1.62 16 27 C -0.25 -6.29 8.63 -38.48 -0.33 -6.62 16 28 H 0.28 6.21 8.29 -40.82 -0.34 5.88 16 29 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 31 H 0.40 7.05 6.29 -40.82 -0.26 6.80 16 32 H 0.12 1.36 6.55 -52.49 -0.34 1.02 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.12 1.46 6.29 -52.49 -0.33 1.13 16 37 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.09 0.93 8.10 -51.92 -0.42 0.51 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 0.90 6.95 -51.93 -0.36 0.54 16 42 H 0.09 1.25 7.36 -51.93 -0.38 0.86 16 43 H 0.13 3.23 6.13 -52.49 -0.32 2.91 16 LS Contribution 355.80 15.07 5.36 5.36 Total: -1.00 -31.19 355.80 -10.75 -41.94 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -5.34 Total: 14.62 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -6.26 Total: -17.25 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.45 Total: -46.47 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.19 -10.75 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532180968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.204 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds