Wall clock time and date at job start Tue Mar 31 2020 13:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99705 * 2 1 4 4 H 1.48497 * 109.47226 * 269.99867 * 3 2 1 5 5 H 1.48506 * 109.47110 * 29.99588 * 3 2 1 6 6 H 1.48498 * 109.47206 * 149.99563 * 3 2 1 7 7 C 1.37873 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99778 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00085 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47061 * 184.50854 * 9 7 2 11 11 C 1.46900 * 110.99528 * 166.59248 * 10 9 7 12 12 C 1.50696 * 109.47441 * 299.14438 * 11 10 9 13 13 C 1.34516 * 125.78772 * 95.80167 * 12 11 10 14 14 C 1.41381 * 106.83980 * 179.89116 * 13 12 11 15 15 C 1.34517 * 106.83974 * 0.37277 * 14 13 12 16 16 O 1.34299 * 108.42338 * 359.77102 * 15 14 13 17 17 C 1.46894 * 110.99783 * 290.54718 * 10 9 7 18 18 C 1.50705 * 109.46978 * 170.97337 * 17 10 9 19 19 C 1.36611 * 120.92317 * 266.40560 * 18 17 10 20 20 C 1.39280 * 119.94125 * 180.02562 * 19 18 17 21 21 N 1.31113 * 121.74691 * 0.02562 * 20 19 18 22 22 C 1.33654 * 121.32126 * 359.97438 * 21 20 19 23 23 C 1.40598 * 121.07704 * 180.02562 * 22 21 20 24 24 C 1.36066 * 119.74733 * 179.97438 * 23 22 21 25 25 C 1.39362 * 121.07311 * 0.03144 * 24 23 22 26 26 C 1.36139 * 120.87466 * 359.94670 * 25 24 23 27 27 C 1.40436 * 119.61221 * 0.02823 * 26 25 24 28 28 H 0.96995 * 120.00708 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46945 * 64.50617 * 9 7 2 30 30 H 1.08998 * 109.46883 * 304.50739 * 9 7 2 31 31 H 1.08999 * 109.47123 * 59.15108 * 11 10 9 32 32 H 1.09003 * 109.46522 * 179.14568 * 11 10 9 33 33 H 1.07995 * 126.57746 * 0.02871 * 13 12 11 34 34 H 1.07997 * 126.58036 * 180.17119 * 14 13 12 35 35 H 1.08006 * 125.78698 * 179.75070 * 15 14 13 36 36 H 1.08996 * 109.47719 * 50.96830 * 17 10 9 37 37 H 1.09007 * 109.47278 * 290.96913 * 17 10 9 38 38 H 1.08007 * 120.02704 * 0.02562 * 19 18 17 39 39 H 1.08005 * 119.12840 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.12829 * 0.23090 * 23 22 21 41 41 H 1.08001 * 119.46775 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.56975 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.19574 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0014 -2.5746 -0.1073 11 6 5.4347 -2.6010 -0.4278 12 6 5.6662 -1.9192 -1.7516 13 6 6.0270 -0.6346 -1.9224 14 6 6.1338 -0.4211 -3.3159 15 6 5.8238 -1.5856 -3.9136 16 8 5.5415 -2.4895 -2.9612 17 6 3.7226 -3.3300 1.1214 18 6 4.0338 -4.7873 0.8966 19 6 3.0602 -5.6603 0.5015 20 6 3.3704 -7.0031 0.3002 21 7 4.5841 -7.4652 0.4803 22 6 5.5823 -6.6645 0.8663 23 6 6.8820 -7.1654 1.0574 24 6 7.8781 -6.3259 1.4502 25 6 7.6330 -4.9715 1.6686 26 6 6.3878 -4.4498 1.4936 27 6 5.3355 -5.2867 1.0881 28 1 -0.4851 0.8399 -0.0004 29 1 3.8745 -0.7514 0.9288 30 1 3.8752 -0.6119 -0.8457 31 1 5.9910 -2.0799 0.3515 32 1 5.7747 -3.6349 -0.4872 33 1 6.2035 0.0931 -1.1443 34 1 6.4081 0.5011 -3.8065 35 1 5.8049 -1.7635 -4.9787 36 1 2.6708 -3.2195 1.3851 37 1 4.3426 -2.9469 1.9320 38 1 2.0507 -5.3095 0.3454 39 1 2.5906 -7.6817 -0.0125 40 1 7.0899 -8.2118 0.8890 41 1 8.8748 -6.7156 1.5961 42 1 8.4416 -4.3270 1.9805 43 1 6.2102 -3.3984 1.6655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535062993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:51 Heat of formation + Delta-G solvation = 89.430768 kcal Electronic energy + Delta-G solvation = -26974.757789 eV Core-core repulsion = 23373.143035 eV Total energy + Delta-G solvation = -3601.614754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.21041 -40.91379 -37.41473 -37.01253 -33.69597 -32.69827 -32.38409 -30.73152 -30.45984 -29.77939 -28.03896 -26.38390 -24.14200 -23.66505 -23.35144 -21.58516 -21.11518 -20.57451 -19.57471 -18.09129 -17.47609 -16.96612 -16.83339 -16.35330 -15.72361 -15.21150 -14.77318 -14.47429 -14.41817 -14.15718 -14.08593 -13.69647 -13.56260 -13.40564 -12.99892 -12.54218 -12.49744 -12.42144 -12.27489 -11.83820 -11.71088 -11.61176 -11.49250 -11.22076 -11.03807 -10.64608 -10.55537 -10.24202 -9.94035 -9.59155 -9.37474 -9.31851 -8.67881 -8.62377 -8.16097 -8.13865 -7.60431 -6.11442 -4.09103 0.46421 0.92266 2.00573 2.13436 2.92466 3.00336 3.24532 3.31448 3.32685 3.34925 4.17038 4.36524 4.37374 4.57743 4.75192 4.80535 4.88357 4.92357 5.03227 5.18086 5.21773 5.22417 5.31446 5.34244 5.43925 5.53122 5.59216 5.67059 5.70645 5.85285 6.03657 6.10099 6.13060 6.17508 6.20949 6.25755 6.38561 6.41138 6.59705 6.62708 6.72113 6.79126 6.81397 6.92639 7.43127 7.50207 7.69701 7.79067 8.01476 8.54239 8.95101 9.49844 11.01385 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.004799 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.561171 B = 5833.274890 C = 7032.559023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.156 3.844 10 N -0.513 5.513 11 C 0.118 3.882 12 C 0.018 3.982 13 C -0.214 4.214 14 C -0.213 4.213 15 C -0.049 4.049 16 O -0.166 6.166 17 C 0.094 3.906 18 C -0.008 4.008 19 C -0.156 4.156 20 C 0.136 3.864 21 N -0.486 5.486 22 C 0.125 3.875 23 C -0.096 4.096 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.097 4.097 27 C -0.098 4.098 28 H 0.264 0.736 29 H -0.010 1.010 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.198 0.802 36 H 0.111 0.889 37 H 0.041 0.959 38 H 0.144 0.856 39 H 0.158 0.842 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.768 -8.858 0.633 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.099 0.901 9 C 0.030 3.970 10 N -0.238 5.238 11 C -0.010 4.010 12 C -0.033 4.033 13 C -0.234 4.234 14 C -0.232 4.232 15 C -0.117 4.117 16 O -0.061 6.061 17 C -0.033 4.033 18 C -0.016 4.016 19 C -0.176 4.176 20 C -0.035 4.035 21 N -0.195 5.195 22 C 0.004 3.996 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.142 4.142 26 C -0.116 4.116 27 C -0.100 4.100 28 H 0.074 0.926 29 H 0.007 0.993 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.215 0.785 36 H 0.129 0.871 37 H 0.059 0.941 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.548 -10.135 0.102 17.730 hybrid contribution 0.553 2.652 0.530 2.760 sum 15.101 -7.483 0.632 16.865 Atomic orbital electron populations 1.69874 1.06074 1.26905 1.50748 1.24844 0.94686 0.98718 0.94718 0.86926 0.80291 0.84242 0.78751 1.20016 1.21166 1.19300 1.20947 0.88384 0.94761 1.50721 0.90060 1.20356 0.97494 0.83524 0.95577 1.62048 1.11210 1.17264 1.33234 1.20927 0.91744 1.00128 0.88161 1.22238 1.02608 0.92852 0.85585 1.21540 1.08937 0.96053 0.96844 1.21727 1.08200 0.99255 0.94061 1.23911 1.05384 0.88459 0.93925 1.84026 1.67946 1.39543 1.14613 1.21092 1.04010 0.87100 0.91068 1.20309 0.91594 0.96689 0.93052 1.21883 1.01538 0.93992 1.00209 1.22956 0.93448 0.93845 0.93301 1.68016 1.00319 1.37845 1.13290 1.18852 0.93751 0.89204 0.97809 1.20748 0.90628 1.00295 0.99773 1.20842 0.99132 0.93555 0.98956 1.20864 0.97068 0.95476 1.00814 1.21233 0.92562 0.99746 0.98011 1.18795 0.94450 0.94492 1.02251 0.92592 0.99267 0.94334 0.92605 0.89223 0.84032 0.83884 0.78536 0.87097 0.94118 0.83842 0.82457 0.85075 0.85637 0.85751 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 21.10 27.38 -169.99 -4.65 16.45 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.19 6.67 56.52 0.38 -5.81 16 7 C -0.51 -13.88 9.06 -34.44 -0.31 -14.19 16 8 H 0.08 2.38 7.48 -52.49 -0.39 1.99 16 9 C 0.16 3.61 3.64 -4.97 -0.02 3.59 16 10 N -0.51 -10.20 4.50 -238.96 -1.08 -11.27 16 11 C 0.12 2.02 3.96 -4.98 -0.02 2.00 16 12 C 0.02 0.33 5.91 -35.63 -0.21 0.12 16 13 C -0.21 -3.68 9.40 -39.70 -0.37 -4.06 16 14 C -0.21 -3.29 10.91 -39.70 -0.43 -3.73 16 15 C -0.05 -0.73 12.09 29.42 0.36 -0.38 16 16 O -0.17 -3.04 10.65 5.71 0.06 -2.98 16 17 C 0.09 1.65 4.77 -4.98 -0.02 1.63 16 18 C -0.01 -0.12 4.97 -104.27 -0.52 -0.64 16 19 C -0.16 -2.33 9.70 -39.78 -0.39 -2.72 16 20 C 0.14 1.87 11.14 -17.47 -0.19 1.68 16 21 N -0.49 -7.37 10.34 -10.98 -0.11 -7.49 16 22 C 0.13 1.87 6.60 -84.85 -0.56 1.31 16 23 C -0.10 -1.18 9.98 -39.47 -0.39 -1.58 16 24 C -0.10 -1.10 9.94 -39.94 -0.40 -1.50 16 25 C -0.12 -1.36 9.95 -39.92 -0.40 -1.76 16 26 C -0.10 -1.27 7.16 -39.51 -0.28 -1.55 16 27 C -0.10 -1.46 4.79 -106.80 -0.51 -1.97 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 29 H -0.01 -0.24 7.45 -51.93 -0.39 -0.62 16 30 H 0.04 0.93 4.86 -51.93 -0.25 0.67 16 31 H 0.06 0.86 6.94 -51.93 -0.36 0.50 16 32 H 0.09 1.50 4.89 -51.93 -0.25 1.24 16 33 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 34 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.20 2.10 8.06 -52.48 -0.42 1.68 16 36 H 0.11 2.13 6.77 -51.93 -0.35 1.78 16 37 H 0.04 0.66 6.70 -51.93 -0.35 0.31 16 38 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 39 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.13 1.64 4.63 -52.48 -0.24 1.39 16 LS Contribution 349.69 15.07 5.27 5.27 Total: -1.00 -32.47 349.69 -9.65 -42.12 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.13 Total: 5.72 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -4.78 Total: -21.80 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.42 Total: -44.78 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: 0.06 Total: -2.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.65 Total: 16.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.47 -9.65 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535062993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.547 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds