Wall clock time and date at job start Tue Mar 31 2020 13:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99705 * 2 1 4 4 H 1.48497 * 109.47226 * 269.99867 * 3 2 1 5 5 H 1.48506 * 109.47110 * 29.99588 * 3 2 1 6 6 H 1.48498 * 109.47206 * 149.99563 * 3 2 1 7 7 C 1.37873 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99778 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00085 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47061 * 184.50854 * 9 7 2 11 11 C 1.46900 * 110.99528 * 166.59248 * 10 9 7 12 12 C 1.50696 * 109.47441 * 299.14438 * 11 10 9 13 13 C 1.34516 * 125.78772 * 95.80167 * 12 11 10 14 14 C 1.41381 * 106.83980 * 179.89116 * 13 12 11 15 15 C 1.34517 * 106.83974 * 0.37277 * 14 13 12 16 16 O 1.34299 * 108.42338 * 359.77102 * 15 14 13 17 17 C 1.46894 * 110.99783 * 290.54718 * 10 9 7 18 18 C 1.50705 * 109.46978 * 170.97337 * 17 10 9 19 19 C 1.36611 * 120.92317 * 266.40560 * 18 17 10 20 20 C 1.39280 * 119.94125 * 180.02562 * 19 18 17 21 21 N 1.31113 * 121.74691 * 0.02562 * 20 19 18 22 22 C 1.33654 * 121.32126 * 359.97438 * 21 20 19 23 23 C 1.40598 * 121.07704 * 180.02562 * 22 21 20 24 24 C 1.36066 * 119.74733 * 179.97438 * 23 22 21 25 25 C 1.39362 * 121.07311 * 0.03144 * 24 23 22 26 26 C 1.36139 * 120.87466 * 359.94670 * 25 24 23 27 27 C 1.40436 * 119.61221 * 0.02823 * 26 25 24 28 28 H 0.96995 * 120.00708 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46945 * 64.50617 * 9 7 2 30 30 H 1.08998 * 109.46883 * 304.50739 * 9 7 2 31 31 H 1.08999 * 109.47123 * 59.15108 * 11 10 9 32 32 H 1.09003 * 109.46522 * 179.14568 * 11 10 9 33 33 H 1.07995 * 126.57746 * 0.02871 * 13 12 11 34 34 H 1.07997 * 126.58036 * 180.17119 * 14 13 12 35 35 H 1.08006 * 125.78698 * 179.75070 * 15 14 13 36 36 H 1.08996 * 109.47719 * 50.96830 * 17 10 9 37 37 H 1.09007 * 109.47278 * 290.96913 * 17 10 9 38 38 H 1.08007 * 120.02704 * 0.02562 * 19 18 17 39 39 H 1.08005 * 119.12840 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.12829 * 0.23090 * 23 22 21 41 41 H 1.08001 * 119.46775 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.56975 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.19574 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0014 -2.5746 -0.1073 11 6 5.4347 -2.6010 -0.4278 12 6 5.6662 -1.9192 -1.7516 13 6 6.0270 -0.6346 -1.9224 14 6 6.1338 -0.4211 -3.3159 15 6 5.8238 -1.5856 -3.9136 16 8 5.5415 -2.4895 -2.9612 17 6 3.7226 -3.3300 1.1214 18 6 4.0338 -4.7873 0.8966 19 6 3.0602 -5.6603 0.5015 20 6 3.3704 -7.0031 0.3002 21 7 4.5841 -7.4652 0.4803 22 6 5.5823 -6.6645 0.8663 23 6 6.8820 -7.1654 1.0574 24 6 7.8781 -6.3259 1.4502 25 6 7.6330 -4.9715 1.6686 26 6 6.3878 -4.4498 1.4936 27 6 5.3355 -5.2867 1.0881 28 1 -0.4851 0.8399 -0.0004 29 1 3.8745 -0.7514 0.9288 30 1 3.8752 -0.6119 -0.8457 31 1 5.9910 -2.0799 0.3515 32 1 5.7747 -3.6349 -0.4872 33 1 6.2035 0.0931 -1.1443 34 1 6.4081 0.5011 -3.8065 35 1 5.8049 -1.7635 -4.9787 36 1 2.6708 -3.2195 1.3851 37 1 4.3426 -2.9469 1.9320 38 1 2.0507 -5.3095 0.3454 39 1 2.5906 -7.6817 -0.0125 40 1 7.0899 -8.2118 0.8890 41 1 8.8748 -6.7156 1.5961 42 1 8.4416 -4.3270 1.9805 43 1 6.2102 -3.3984 1.6655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535062993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:51 Heat of formation + Delta-G solvation = 69.358252 kcal Electronic energy + Delta-G solvation = -26975.628199 eV Core-core repulsion = 23373.143035 eV Total energy + Delta-G solvation = -3602.485163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.46827 -41.98987 -38.86015 -37.99965 -35.12823 -34.43388 -33.78061 -31.98387 -31.48111 -30.96508 -29.76482 -27.66136 -25.70871 -24.73173 -24.41879 -23.02265 -22.52251 -21.80194 -20.90500 -19.17899 -18.97834 -18.51365 -18.00353 -17.55049 -17.08238 -16.72655 -16.08442 -15.84339 -15.60552 -15.48987 -15.20466 -14.94331 -14.90910 -14.73016 -14.36456 -14.04760 -13.89824 -13.72600 -13.49965 -13.24874 -12.96938 -12.90471 -12.68454 -12.53916 -12.40768 -12.15485 -12.12284 -11.91594 -11.60572 -11.18917 -10.84827 -10.72707 -10.49735 -9.69915 -9.43304 -9.19760 -9.09021 -8.28273 -6.30632 -0.57857 -0.10668 0.78416 1.02116 1.33079 1.34206 1.43552 1.70830 2.02015 2.16363 2.33116 3.00667 3.08609 3.30134 3.39819 3.57316 3.70867 3.77855 3.80558 3.99348 4.09020 4.14204 4.24805 4.27313 4.33103 4.35290 4.41591 4.50954 4.57930 4.66611 4.80761 4.88420 4.92679 4.96330 5.00535 5.06835 5.17045 5.21352 5.22227 5.46321 5.51105 5.55454 5.61307 5.63192 5.88305 5.95081 6.15890 6.26132 6.53554 6.74390 6.92129 7.32028 8.87960 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.004799 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.561171 B = 5833.274890 C = 7032.559023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.512 4.512 8 H 0.042 0.958 9 C 0.170 3.830 10 N -0.531 5.531 11 C 0.126 3.874 12 C -0.014 4.014 13 C -0.220 4.220 14 C -0.225 4.225 15 C -0.047 4.047 16 O -0.191 6.191 17 C 0.103 3.897 18 C -0.023 4.023 19 C -0.168 4.168 20 C 0.132 3.868 21 N -0.497 5.497 22 C 0.102 3.898 23 C -0.108 4.108 24 C -0.092 4.092 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.108 4.108 28 H 0.266 0.734 29 H -0.005 1.005 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.237 0.763 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.137 0.863 39 H 0.187 0.813 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.399 -8.447 0.458 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.044 3.956 10 N -0.256 5.256 11 C -0.001 4.001 12 C -0.064 4.064 13 C -0.240 4.240 14 C -0.243 4.243 15 C -0.114 4.114 16 O -0.087 6.087 17 C -0.024 4.024 18 C -0.032 4.032 19 C -0.189 4.189 20 C -0.039 4.039 21 N -0.206 5.206 22 C -0.019 4.019 23 C -0.127 4.127 24 C -0.111 4.111 25 C -0.128 4.128 26 C -0.135 4.135 27 C -0.111 4.111 28 H 0.075 0.925 29 H 0.012 0.988 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.168 0.832 34 H 0.188 0.812 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.204 0.796 40 H 0.163 0.837 41 H 0.182 0.818 42 H 0.175 0.825 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.205 -9.743 -0.063 20.649 hybrid contribution -0.518 2.412 0.556 2.529 sum 17.687 -7.331 0.493 19.153 Atomic orbital electron populations 1.70028 1.07990 1.27967 1.52613 1.25720 0.95472 1.02716 0.94485 0.85872 0.79761 0.79291 0.79072 1.19601 1.20783 1.16959 1.21201 0.90815 0.93323 1.49696 0.93993 1.20033 0.94513 0.85655 0.95395 1.61859 1.13647 1.15456 1.34595 1.20914 0.89820 1.00720 0.88614 1.22455 1.04461 0.93639 0.85887 1.21848 1.08226 0.95800 0.98172 1.22117 1.08258 1.00538 0.93420 1.24788 1.03551 0.87913 0.95139 1.84012 1.68555 1.40861 1.15263 1.20907 1.02408 0.88327 0.90732 1.20208 0.92802 0.95646 0.94497 1.21973 1.01269 0.94893 1.00756 1.23321 0.93956 0.93642 0.92999 1.68061 1.00754 1.38208 1.13599 1.19288 0.94865 0.89329 0.98452 1.21032 0.89950 1.01503 1.00211 1.21295 1.00301 0.93045 0.96501 1.21301 0.96897 0.96186 0.98454 1.21322 0.93118 0.99733 0.99291 1.18890 0.94316 0.95047 1.02811 0.92510 0.98752 0.94620 0.90573 0.88890 0.83175 0.81198 0.74702 0.90088 0.92706 0.84514 0.79648 0.83673 0.81799 0.82481 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.41 13.96 21.45 0.30 -58.12 16 2 C 0.01 0.78 5.47 84.65 0.46 1.25 16 3 Si 0.94 43.45 27.38 68.60 1.88 45.33 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.25 -10.44 6.67 99.48 0.66 -9.78 16 7 C -0.51 -28.93 9.06 25.60 0.23 -28.70 16 8 H 0.04 2.63 7.48 -2.91 -0.02 2.61 16 9 C 0.17 7.93 3.64 85.56 0.31 8.24 16 10 N -0.53 -21.52 4.50 -909.95 -4.10 -25.62 16 11 C 0.13 4.26 3.96 85.56 0.34 4.59 16 12 C -0.01 -0.50 5.91 24.83 0.15 -0.35 16 13 C -0.22 -7.19 9.40 22.19 0.21 -6.98 16 14 C -0.22 -6.36 10.91 22.19 0.24 -6.12 16 15 C -0.05 -1.31 12.09 66.97 0.81 -0.50 16 16 O -0.19 -6.81 10.65 -2.49 -0.03 -6.84 16 17 C 0.10 3.77 4.77 85.56 0.41 4.18 16 18 C -0.02 -0.76 4.97 -19.64 -0.10 -0.86 16 19 C -0.17 -5.35 9.70 22.14 0.21 -5.13 16 20 C 0.13 3.73 11.14 85.05 0.95 4.67 16 21 N -0.50 -15.04 10.34 -188.64 -1.95 -16.99 16 22 C 0.10 2.97 6.60 40.30 0.27 3.24 16 23 C -0.11 -2.44 9.98 22.34 0.22 -2.22 16 24 C -0.09 -1.58 9.94 22.03 0.22 -1.36 16 25 C -0.11 -2.03 9.95 22.05 0.22 -1.82 16 26 C -0.12 -2.84 7.16 22.32 0.16 -2.68 16 27 C -0.11 -3.23 4.79 -21.28 -0.10 -3.33 16 28 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 29 H -0.01 -0.23 7.45 -2.39 -0.02 -0.25 16 30 H 0.04 1.69 4.86 -2.39 -0.01 1.68 16 31 H 0.08 2.22 6.94 -2.39 -0.02 2.20 16 32 H 0.09 3.07 4.89 -2.39 -0.01 3.06 16 33 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.24 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.08 3.38 6.77 -2.39 -0.02 3.37 16 37 H 0.06 1.80 6.70 -2.38 -0.02 1.78 16 38 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 39 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 42 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.13 3.10 4.63 -2.91 -0.01 3.08 16 Total: -1.00 -73.03 349.69 2.31 -70.72 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.99 Total: 25.37 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 5.21 Total: -33.86 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -5.75 Total: -100.72 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.03 Total: -6.84 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Total: -73.03 2.31 -70.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535062993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.077 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds