Wall clock time and date at job start Tue Mar 31 2020 13:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86796 * 120.00017 * 2 1 4 4 H 1.48506 * 109.47246 * 90.00026 * 3 2 1 5 5 H 1.48508 * 109.47235 * 209.99700 * 3 2 1 6 6 H 1.48493 * 109.47426 * 329.99577 * 3 2 1 7 7 C 1.40231 * 119.99728 * 180.27490 * 2 1 3 8 8 H 1.08006 * 119.99875 * 165.05046 * 7 2 1 9 9 C 1.41104 * 120.00040 * 345.04465 * 7 2 1 10 10 C 1.40891 * 120.10512 * 334.84100 * 9 7 2 11 11 C 1.36312 * 119.89013 * 179.73607 * 10 9 7 12 12 C 1.40013 * 120.10970 * 0.54333 * 11 10 9 13 13 C 1.47643 * 119.89849 * 179.73833 * 12 11 10 14 14 O 1.21583 * 119.99968 * 188.31626 * 13 12 11 15 15 N 1.34779 * 119.99701 * 8.31092 * 13 12 11 16 16 C 1.47024 * 125.64930 * 354.51640 * 15 13 12 17 17 C 1.54335 * 107.26175 * 178.84699 * 16 15 13 18 18 C 1.55154 * 103.02298 * 338.13848 * 17 16 15 19 19 H 1.08993 * 111.03724 * 277.21539 * 18 17 16 20 20 C 1.50703 * 111.00121 * 153.37988 * 18 17 16 21 21 C 1.38649 * 120.79114 * 306.06825 * 20 18 17 22 22 C 1.38205 * 119.16040 * 179.75650 * 21 20 18 23 23 N 1.31879 * 120.76398 * 0.53370 * 22 21 20 24 24 C 1.31873 * 121.72325 * 359.73991 * 23 22 21 25 25 C 1.38196 * 120.76457 * 359.97438 * 24 23 22 26 26 C 1.47427 * 125.64701 * 174.82195 * 15 13 12 27 27 C 1.40009 * 120.20855 * 359.71104 * 12 11 10 28 28 C 1.36324 * 120.10750 * 0.02562 * 27 12 11 29 29 H 0.97005 * 120.00083 * 359.72488 * 1 2 3 30 30 H 1.08003 * 120.05322 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.94642 * 180.27812 * 11 10 9 32 32 H 1.09006 * 109.87875 * 298.39145 * 16 15 13 33 33 H 1.08997 * 109.88346 * 59.55600 * 16 15 13 34 34 H 1.09000 * 110.84732 * 219.66353 * 17 16 15 35 35 H 1.09010 * 110.66676 * 96.52538 * 17 16 15 36 36 H 1.07997 * 120.42365 * 0.02562 * 21 20 18 37 37 H 1.08001 * 119.62006 * 180.29554 * 22 21 20 38 38 H 1.07997 * 119.61620 * 180.02562 * 24 23 22 39 39 H 1.08000 * 120.41586 * 180.02562 * 25 24 23 40 40 H 1.09009 * 110.36272 * 322.92802 * 26 15 13 41 41 H 1.08991 * 110.36740 * 85.14393 * 26 15 13 42 42 H 1.07999 * 119.95019 * 179.97438 * 27 12 11 43 43 H 1.07995 * 120.05454 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 1.4001 5 1 3.5380 1.4401 -0.7000 6 1 1.4380 2.6526 -0.7001 7 6 2.0075 -1.2145 -0.0058 8 1 3.0601 -1.2292 -0.2472 9 6 1.3378 -2.4172 0.3038 10 6 0.1789 -2.3949 1.1048 11 6 -0.4676 -3.5588 1.3967 12 6 0.0244 -4.7765 0.9113 13 6 -0.6763 -6.0350 1.2352 14 8 -0.1727 -7.1031 0.9457 15 7 -1.8743 -5.9998 1.8518 16 6 -2.5421 -4.7919 2.3583 17 6 -3.8952 -5.2330 2.9555 18 6 -4.1619 -6.5900 2.2522 19 1 -4.6041 -6.4401 1.2674 20 6 -5.0338 -7.4771 3.1032 21 6 -4.6866 -7.7669 4.4138 22 6 -5.5135 -8.5802 5.1654 23 7 -6.6150 -9.0865 4.6462 24 6 -6.9734 -8.8367 3.4019 25 6 -6.1993 -8.0275 2.5921 26 6 -2.7290 -7.1669 2.1358 27 6 1.1787 -4.8043 0.1194 28 6 1.8292 -3.6449 -0.1823 29 1 -0.4850 0.8401 0.0040 30 1 -0.1991 -1.4565 1.4830 31 1 -1.3586 -3.5422 2.0069 32 1 -1.9290 -4.3250 3.1292 33 1 -2.7107 -4.0910 1.5407 34 1 -4.6781 -4.5136 2.7154 35 1 -3.8143 -5.3669 4.0343 36 1 -3.7838 -7.3587 4.8434 37 1 -5.2527 -8.8068 6.1887 38 1 -7.8828 -9.2690 3.0115 39 1 -6.4984 -7.8264 1.5740 40 1 -2.6746 -7.8851 1.3176 41 1 -2.4302 -7.6369 3.0727 42 1 1.5548 -5.7460 -0.2524 43 1 2.7196 -3.6675 -0.7929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552135208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:51 Heat of formation + Delta-G solvation = 37.205366 kcal Electronic energy + Delta-G solvation = -25662.694845 eV Core-core repulsion = 22058.815427 eV Total energy + Delta-G solvation = -3603.879417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70428 -39.58991 -37.59203 -36.76910 -34.03179 -33.66154 -31.47402 -30.80030 -30.20460 -29.53007 -28.50112 -26.08141 -24.28554 -23.75611 -23.12704 -21.48156 -20.86610 -20.42835 -19.13900 -17.51666 -17.32062 -16.80568 -16.18590 -15.77133 -15.62216 -15.35859 -15.04406 -14.38782 -14.05675 -14.02830 -13.73834 -13.47105 -13.43805 -13.02913 -12.94197 -12.64623 -12.36894 -12.29631 -11.91181 -11.87800 -11.69264 -11.41014 -11.29825 -11.07247 -10.89406 -10.77076 -10.65380 -10.01445 -9.72994 -9.71007 -9.48821 -9.39391 -9.25854 -8.98516 -8.30249 -7.72352 -7.53725 -7.02724 -4.62677 0.89623 0.98251 2.20728 2.90145 2.93676 2.96506 3.02594 3.40222 3.54826 3.72324 3.80324 4.22076 4.28352 4.39582 4.51212 4.56413 4.71034 4.86515 4.91082 4.97124 5.22273 5.25935 5.40105 5.52152 5.54845 5.59406 5.64263 5.75477 5.80747 5.87461 5.92278 6.01398 6.13873 6.19678 6.30299 6.45448 6.64981 6.77646 6.81568 7.04381 7.13109 7.43575 7.62931 7.73169 7.79601 7.85928 8.04740 8.12248 8.39611 8.62367 8.74925 8.97271 9.88125 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.002512 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.815948 B =11143.290545 C =11925.647908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.275 1.275 7 C -0.442 4.442 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.101 4.101 12 C -0.279 4.279 13 C 0.587 3.413 14 O -0.572 6.572 15 N -0.626 5.626 16 C 0.100 3.900 17 C -0.127 4.127 18 C -0.069 4.069 19 H 0.098 0.902 20 C -0.022 4.022 21 C -0.167 4.167 22 C 0.099 3.901 23 N -0.492 5.492 24 C 0.098 3.902 25 C -0.168 4.168 26 C 0.121 3.879 27 C -0.024 4.024 28 C -0.238 4.238 29 H 0.286 0.714 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.153 -6.268 6.880 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.102 0.898 9 C 0.123 3.877 10 C -0.198 4.198 11 C -0.119 4.119 12 C -0.283 4.283 13 C 0.385 3.615 14 O -0.454 6.454 15 N -0.361 5.361 16 C -0.023 4.023 17 C -0.165 4.165 18 C -0.088 4.088 19 H 0.116 0.884 20 C -0.030 4.030 21 C -0.186 4.186 22 C -0.057 4.057 23 N -0.201 5.201 24 C -0.059 4.059 25 C -0.188 4.188 26 C -0.002 4.002 27 C -0.043 4.043 28 C -0.257 4.257 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.529 -7.201 7.172 16.133 hybrid contribution 0.822 1.396 -0.629 1.738 sum -11.706 -5.804 6.543 14.613 Atomic orbital electron populations 1.69727 1.07831 1.29882 1.32461 1.26091 0.94872 1.01847 0.91945 0.86187 0.80530 0.79806 0.79609 1.18966 1.18318 1.20008 1.19863 0.97455 0.90826 1.38826 0.89825 1.17847 0.90885 0.92112 0.86825 1.21087 0.99265 0.97000 1.02412 1.21800 0.99094 0.92423 0.98560 1.18815 1.02897 0.91028 1.15581 1.18410 0.78110 0.89877 0.75109 1.90646 1.66047 1.32478 1.56223 1.48273 1.19762 1.07274 1.60794 1.22505 0.92032 0.88769 0.98991 1.22897 0.97436 0.95774 1.00415 1.21409 0.94336 0.94239 0.98801 0.88415 1.20076 0.94168 0.94760 0.94003 1.22069 1.01558 1.00319 0.94703 1.22758 0.89906 0.93074 0.99991 1.67677 1.16675 1.22122 1.13607 1.22747 0.98904 0.94731 0.89477 1.22093 0.95697 0.99370 1.01629 1.22071 0.87095 0.89653 1.01367 1.20353 0.92784 0.97008 0.94176 1.20725 1.03832 0.92833 1.08327 0.90318 0.85950 0.85741 0.90269 0.89858 0.89659 0.90348 0.84597 0.82764 0.82811 0.84692 0.90600 0.91852 0.88249 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.24 10.81 55.56 0.60 -17.64 16 2 C 0.07 1.68 5.20 -17.31 -0.09 1.59 16 3 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 6 H -0.28 -5.04 7.11 56.52 0.40 -4.63 16 7 C -0.44 -10.91 9.06 -37.75 -0.34 -11.25 16 8 H 0.08 1.98 7.89 -52.48 -0.41 1.57 16 9 C 0.13 3.20 5.58 -106.80 -0.60 2.61 16 10 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 11 C -0.10 -2.19 8.51 -39.61 -0.34 -2.52 16 12 C -0.28 -6.37 5.89 -104.73 -0.62 -6.99 16 13 C 0.59 12.64 7.80 -12.42 -0.10 12.54 16 14 O -0.57 -13.83 16.65 5.29 0.09 -13.74 16 15 N -0.63 -10.49 3.33 -176.69 -0.59 -11.08 16 16 C 0.10 1.35 4.87 -3.06 -0.01 1.33 16 17 C -0.13 -1.26 6.36 -24.89 -0.16 -1.41 16 18 C -0.07 -0.71 3.29 -89.62 -0.29 -1.00 16 19 H 0.10 0.96 8.02 -51.93 -0.42 0.55 16 20 C -0.02 -0.21 5.01 -104.32 -0.52 -0.73 16 21 C -0.17 -1.53 8.40 -39.44 -0.33 -1.86 16 22 C 0.10 0.93 11.18 -17.54 -0.20 0.73 16 23 N -0.49 -5.26 10.36 -13.25 -0.14 -5.40 16 24 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 25 C -0.17 -1.46 9.78 -39.44 -0.39 -1.85 16 26 C 0.12 1.65 6.31 -2.53 -0.02 1.64 16 27 C -0.02 -0.57 9.52 -39.61 -0.38 -0.95 16 28 C -0.24 -5.76 9.73 -39.27 -0.38 -6.14 16 29 H 0.29 6.03 8.29 -40.82 -0.34 5.70 16 30 H 0.12 2.97 6.08 -52.48 -0.32 2.66 16 31 H 0.13 2.26 2.73 -58.95 -0.16 2.09 16 32 H 0.08 1.08 6.79 -51.93 -0.35 0.72 16 33 H 0.08 1.20 6.66 -51.93 -0.35 0.85 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.69 6.86 -51.92 -0.36 0.34 16 36 H 0.14 1.11 7.17 -52.49 -0.38 0.73 16 37 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.14 0.91 8.04 -52.49 -0.42 0.49 16 40 H 0.08 1.12 8.09 -51.92 -0.42 0.70 16 41 H 0.06 0.83 7.13 -51.93 -0.37 0.46 16 42 H 0.10 2.28 7.65 -52.49 -0.40 1.88 16 43 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -29.97 352.10 -10.23 -40.21 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.18 Total: 8.46 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -5.29 Total: -18.21 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.12 Total: -34.12 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.97 -10.23 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552135208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.412 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds