Wall clock time and date at job start Tue Mar 31 2020 13:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86796 * 120.00017 * 2 1 4 4 H 1.48506 * 109.47246 * 90.00026 * 3 2 1 5 5 H 1.48508 * 109.47235 * 209.99700 * 3 2 1 6 6 H 1.48493 * 109.47426 * 329.99577 * 3 2 1 7 7 C 1.40231 * 119.99728 * 180.27490 * 2 1 3 8 8 H 1.08006 * 119.99875 * 165.05046 * 7 2 1 9 9 C 1.41104 * 120.00040 * 345.04465 * 7 2 1 10 10 C 1.40891 * 120.10512 * 334.84100 * 9 7 2 11 11 C 1.36312 * 119.89013 * 179.73607 * 10 9 7 12 12 C 1.40013 * 120.10970 * 0.54333 * 11 10 9 13 13 C 1.47643 * 119.89849 * 179.73833 * 12 11 10 14 14 O 1.21583 * 119.99968 * 188.31626 * 13 12 11 15 15 N 1.34779 * 119.99701 * 8.31092 * 13 12 11 16 16 C 1.47024 * 125.64930 * 354.51640 * 15 13 12 17 17 C 1.54335 * 107.26175 * 178.84699 * 16 15 13 18 18 C 1.55154 * 103.02298 * 338.13848 * 17 16 15 19 19 H 1.08993 * 111.03724 * 277.21539 * 18 17 16 20 20 C 1.50703 * 111.00121 * 153.37988 * 18 17 16 21 21 C 1.38649 * 120.79114 * 306.06825 * 20 18 17 22 22 C 1.38205 * 119.16040 * 179.75650 * 21 20 18 23 23 N 1.31879 * 120.76398 * 0.53370 * 22 21 20 24 24 C 1.31873 * 121.72325 * 359.73991 * 23 22 21 25 25 C 1.38196 * 120.76457 * 359.97438 * 24 23 22 26 26 C 1.47427 * 125.64701 * 174.82195 * 15 13 12 27 27 C 1.40009 * 120.20855 * 359.71104 * 12 11 10 28 28 C 1.36324 * 120.10750 * 0.02562 * 27 12 11 29 29 H 0.97005 * 120.00083 * 359.72488 * 1 2 3 30 30 H 1.08003 * 120.05322 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.94642 * 180.27812 * 11 10 9 32 32 H 1.09006 * 109.87875 * 298.39145 * 16 15 13 33 33 H 1.08997 * 109.88346 * 59.55600 * 16 15 13 34 34 H 1.09000 * 110.84732 * 219.66353 * 17 16 15 35 35 H 1.09010 * 110.66676 * 96.52538 * 17 16 15 36 36 H 1.07997 * 120.42365 * 0.02562 * 21 20 18 37 37 H 1.08001 * 119.62006 * 180.29554 * 22 21 20 38 38 H 1.07997 * 119.61620 * 180.02562 * 24 23 22 39 39 H 1.08000 * 120.41586 * 180.02562 * 25 24 23 40 40 H 1.09009 * 110.36272 * 322.92802 * 26 15 13 41 41 H 1.08991 * 110.36740 * 85.14393 * 26 15 13 42 42 H 1.07999 * 119.95019 * 179.97438 * 27 12 11 43 43 H 1.07995 * 120.05454 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 1.4001 5 1 3.5380 1.4401 -0.7000 6 1 1.4380 2.6526 -0.7001 7 6 2.0075 -1.2145 -0.0058 8 1 3.0601 -1.2292 -0.2472 9 6 1.3378 -2.4172 0.3038 10 6 0.1789 -2.3949 1.1048 11 6 -0.4676 -3.5588 1.3967 12 6 0.0244 -4.7765 0.9113 13 6 -0.6763 -6.0350 1.2352 14 8 -0.1727 -7.1031 0.9457 15 7 -1.8743 -5.9998 1.8518 16 6 -2.5421 -4.7919 2.3583 17 6 -3.8952 -5.2330 2.9555 18 6 -4.1619 -6.5900 2.2522 19 1 -4.6041 -6.4401 1.2674 20 6 -5.0338 -7.4771 3.1032 21 6 -4.6866 -7.7669 4.4138 22 6 -5.5135 -8.5802 5.1654 23 7 -6.6150 -9.0865 4.6462 24 6 -6.9734 -8.8367 3.4019 25 6 -6.1993 -8.0275 2.5921 26 6 -2.7290 -7.1669 2.1358 27 6 1.1787 -4.8043 0.1194 28 6 1.8292 -3.6449 -0.1823 29 1 -0.4850 0.8401 0.0040 30 1 -0.1991 -1.4565 1.4830 31 1 -1.3586 -3.5422 2.0069 32 1 -1.9290 -4.3250 3.1292 33 1 -2.7107 -4.0910 1.5407 34 1 -4.6781 -4.5136 2.7154 35 1 -3.8143 -5.3669 4.0343 36 1 -3.7838 -7.3587 4.8434 37 1 -5.2527 -8.8068 6.1887 38 1 -7.8828 -9.2690 3.0115 39 1 -6.4984 -7.8264 1.5740 40 1 -2.6746 -7.8851 1.3176 41 1 -2.4302 -7.6369 3.0727 42 1 1.5548 -5.7460 -0.2524 43 1 2.7196 -3.6675 -0.7929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552135208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:50 Heat of formation + Delta-G solvation = 21.652299 kcal Electronic energy + Delta-G solvation = -25663.369276 eV Core-core repulsion = 22058.815427 eV Total energy + Delta-G solvation = -3604.553849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64370 -40.82122 -39.12275 -38.33669 -35.71532 -34.78632 -32.33238 -32.08600 -31.45729 -31.29294 -29.70802 -27.74787 -25.49863 -24.58366 -24.06275 -23.11048 -22.46565 -21.40021 -20.68012 -19.31823 -18.19578 -18.11407 -17.32003 -17.06227 -16.67357 -16.55374 -16.33234 -15.89959 -15.23641 -15.04859 -14.87049 -14.73340 -14.57286 -14.35810 -14.31673 -14.05025 -13.81340 -13.63234 -13.35007 -13.16378 -12.86264 -12.75848 -12.57682 -12.54590 -12.40904 -12.17051 -11.74589 -11.66655 -11.19278 -11.02636 -10.75790 -10.41030 -10.38052 -10.04864 -9.73427 -9.55987 -9.35615 -8.76522 -6.48887 0.24322 0.27117 0.43503 1.15311 1.39332 1.43185 1.53076 2.05427 2.09710 2.17494 2.76492 2.85398 3.40112 3.56233 3.59812 3.64451 3.69664 3.94054 4.11877 4.16282 4.20893 4.23774 4.27677 4.34545 4.42841 4.50140 4.60169 4.72935 4.76623 4.82114 4.93671 4.94933 4.99118 5.03359 5.07112 5.12455 5.16835 5.30737 5.40834 5.46112 5.60623 5.81129 5.83327 5.96737 6.01566 6.23011 6.54367 6.56613 6.77969 6.90217 7.06645 7.32046 8.17585 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.002512 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.815948 B =11143.290545 C =11925.647908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.473 4.473 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.197 4.197 11 C -0.091 4.091 12 C -0.290 4.290 13 C 0.582 3.418 14 O -0.608 6.608 15 N -0.621 5.621 16 C 0.089 3.911 17 C -0.113 4.113 18 C -0.053 4.053 19 H 0.105 0.895 20 C -0.030 4.030 21 C -0.169 4.169 22 C 0.090 3.910 23 N -0.517 5.517 24 C 0.090 3.910 25 C -0.167 4.167 26 C 0.116 3.884 27 C -0.037 4.037 28 C -0.253 4.253 29 H 0.297 0.703 30 H 0.119 0.881 31 H 0.163 0.837 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.155 0.845 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.108 -5.297 7.926 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.217 4.217 11 C -0.108 4.108 12 C -0.294 4.294 13 C 0.379 3.621 14 O -0.493 6.493 15 N -0.353 5.353 16 C -0.033 4.033 17 C -0.151 4.151 18 C -0.072 4.072 19 H 0.123 0.877 20 C -0.039 4.039 21 C -0.189 4.189 22 C -0.066 4.066 23 N -0.226 5.226 24 C -0.067 4.067 25 C -0.187 4.187 26 C -0.006 4.006 27 C -0.056 4.056 28 C -0.273 4.273 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.179 0.821 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.164 0.836 37 H 0.190 0.810 38 H 0.193 0.807 39 H 0.172 0.828 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.535 -6.236 8.239 17.834 hybrid contribution 1.336 0.992 -0.937 1.910 sum -13.199 -5.244 7.302 15.969 Atomic orbital electron populations 1.69740 1.09038 1.31491 1.31942 1.26897 0.95659 1.04677 0.90911 0.85098 0.78979 0.75279 0.79832 1.18255 1.18408 1.18829 1.20105 0.97700 0.91863 1.40366 0.89982 1.18211 0.91887 0.92733 0.87634 1.21146 0.99697 0.97637 1.03189 1.22205 0.99688 0.91129 0.97824 1.19123 1.02800 0.92346 1.15177 1.18211 0.79498 0.88731 0.75688 1.90615 1.67470 1.33241 1.57987 1.48217 1.18508 1.09769 1.58837 1.22668 0.94013 0.87645 0.98951 1.22872 0.95407 0.95794 1.01029 1.21269 0.92076 0.94255 0.99596 0.87653 1.20044 0.94527 0.95221 0.94097 1.22204 1.01830 1.00216 0.94663 1.23098 0.89652 0.92951 1.00945 1.67703 1.17451 1.22914 1.14581 1.23160 0.99720 0.94677 0.89116 1.22319 0.95214 0.98654 1.02483 1.22276 0.88755 0.88549 1.01060 1.20497 0.93524 0.96823 0.94768 1.20854 1.04404 0.93020 1.09014 0.89189 0.86351 0.82054 0.89909 0.90418 0.87299 0.88730 0.83634 0.81008 0.80684 0.82759 0.92070 0.91123 0.88320 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.39 10.81 21.87 0.24 -37.15 16 2 C 0.04 1.71 5.20 85.35 0.44 2.15 16 3 Si 0.99 34.48 29.59 68.60 2.03 36.51 16 4 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 6 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 7 C -0.47 -23.89 9.06 23.46 0.21 -23.68 16 8 H 0.08 4.01 7.89 -2.91 -0.02 3.98 16 9 C 0.10 5.14 5.58 -21.28 -0.12 5.02 16 10 C -0.20 -9.65 8.63 22.47 0.19 -9.46 16 11 C -0.09 -3.94 8.51 22.25 0.19 -3.75 16 12 C -0.29 -13.46 5.89 -19.93 -0.12 -13.58 16 13 C 0.58 25.23 7.80 86.73 0.68 25.90 16 14 O -0.61 -30.02 16.65 -3.98 -0.07 -30.08 16 15 N -0.62 -20.15 3.33 -831.20 -2.76 -22.92 16 16 C 0.09 2.20 4.87 86.73 0.42 2.63 16 17 C -0.11 -1.83 6.36 31.79 0.20 -1.63 16 18 C -0.05 -0.94 3.29 -10.15 -0.03 -0.97 16 19 H 0.11 1.75 8.02 -2.39 -0.02 1.73 16 20 C -0.03 -0.50 5.01 -19.67 -0.10 -0.59 16 21 C -0.17 -2.69 8.40 22.36 0.19 -2.50 16 22 C 0.09 1.49 11.18 84.68 0.95 2.44 16 23 N -0.52 -10.08 10.36 -195.84 -2.03 -12.11 16 24 C 0.09 1.41 11.18 84.68 0.95 2.36 16 25 C -0.17 -2.45 9.78 22.36 0.22 -2.23 16 26 C 0.12 2.99 6.31 86.85 0.55 3.54 16 27 C -0.04 -1.81 9.52 22.25 0.21 -1.60 16 28 C -0.25 -12.78 9.73 22.47 0.22 -12.56 16 29 H 0.30 12.28 8.29 -92.70 -0.77 11.51 16 30 H 0.12 5.81 6.08 -2.91 -0.02 5.79 16 31 H 0.16 5.64 2.73 -8.98 -0.02 5.62 16 32 H 0.08 2.04 6.79 -2.38 -0.02 2.03 16 33 H 0.08 2.07 6.66 -2.39 -0.02 2.05 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.29 6.86 -2.38 -0.02 1.27 16 36 H 0.15 1.96 7.17 -2.91 -0.02 1.94 16 37 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.15 1.59 8.04 -2.91 -0.02 1.56 16 40 H 0.06 1.77 8.09 -2.38 -0.02 1.75 16 41 H 0.07 1.74 7.13 -2.39 -0.02 1.72 16 42 H 0.10 4.75 7.65 -2.91 -0.02 4.72 16 43 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -66.58 352.10 3.68 -62.90 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 1.03 Total: 31.38 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 5.25 Total: -28.52 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -4.56 Total: -72.18 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.07 Total: -30.08 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -66.58 3.68 -62.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552135208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.547 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds