Wall clock time and date at job start Tue Mar 31 2020 13:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86792 * 120.00016 * 2 1 4 4 H 1.48499 * 109.47408 * 240.00264 * 3 2 1 5 5 H 1.48503 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47401 * 120.00206 * 3 2 1 7 7 C 1.40227 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99257 * 175.54012 * 7 2 1 9 9 C 1.41101 * 120.00377 * 355.53963 * 7 2 1 10 10 C 1.40892 * 120.10785 * 214.79452 * 9 7 2 11 11 C 1.36314 * 119.89567 * 179.97438 * 10 9 7 12 12 C 1.40013 * 120.10443 * 359.97438 * 11 10 9 13 13 C 1.47639 * 119.89304 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00381 * 7.39640 * 13 12 11 15 15 N 1.34775 * 119.99832 * 187.39318 * 13 12 11 16 16 C 1.47023 * 125.65178 * 354.23361 * 15 13 12 17 17 C 1.54329 * 107.40399 * 181.10070 * 16 15 13 18 18 C 1.55156 * 102.93947 * 22.11701 * 17 16 15 19 19 H 1.09000 * 111.00188 * 82.57324 * 18 17 16 20 20 C 1.50697 * 111.00242 * 206.42096 * 18 17 16 21 21 C 1.38649 * 120.79304 * 59.72260 * 20 18 17 22 22 C 1.38201 * 119.16387 * 179.75729 * 21 20 18 23 23 N 1.31865 * 120.76774 * 0.52452 * 22 21 20 24 24 C 1.31868 * 121.72231 * 359.74828 * 23 22 21 25 25 C 1.38207 * 120.76470 * 359.97375 * 24 23 22 26 26 C 1.47751 * 125.82417 * 174.14510 * 15 13 12 27 27 C 1.40015 * 120.20881 * 0.26278 * 12 11 10 28 28 C 1.36316 * 120.10742 * 359.47579 * 27 12 11 29 29 H 0.96999 * 120.00150 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.04855 * 359.95773 * 10 9 7 31 31 H 1.08000 * 119.94853 * 180.02562 * 11 10 9 32 32 H 1.09005 * 109.87943 * 61.60751 * 16 15 13 33 33 H 1.08992 * 109.88344 * 300.59767 * 16 15 13 34 34 H 1.08998 * 110.71640 * 140.47769 * 17 16 15 35 35 H 1.08996 * 110.72222 * 263.57820 * 17 16 15 36 36 H 1.08009 * 120.41489 * 0.02562 * 21 20 18 37 37 H 1.08005 * 119.61537 * 180.29741 * 22 21 20 38 38 H 1.08005 * 119.61876 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.41414 * 180.02562 * 25 24 23 40 40 H 1.08997 * 110.28798 * 37.01807 * 26 15 13 41 41 H 1.09006 * 110.42940 * 274.71133 * 26 15 13 42 42 H 1.08010 * 119.94282 * 179.73976 * 27 12 11 43 43 H 1.08005 * 120.05259 * 180.28229 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2754 2.7464 0.0006 6 1 3.0942 1.6964 1.2124 7 6 2.0075 -1.2144 -0.0005 8 1 3.0851 -1.2157 -0.0733 9 6 1.3052 -2.4346 0.0939 10 6 1.8658 -3.5202 0.7955 11 6 1.1834 -4.6969 0.8845 12 6 -0.0730 -4.8274 0.2806 13 6 -0.8079 -6.1041 0.3794 14 8 -0.3878 -6.9937 1.0939 15 7 -1.9445 -6.2835 -0.3223 16 6 -2.6263 -5.2583 -1.1258 17 6 -3.8938 -5.9064 -1.7217 18 6 -4.1565 -7.0994 -0.7652 19 1 -4.6924 -6.7745 0.1266 20 6 -4.9037 -8.2022 -1.4699 21 6 -4.3678 -8.8197 -2.5897 22 6 -5.0797 -9.8309 -3.2066 23 7 -6.2591 -10.2022 -2.7483 24 6 -6.8018 -9.6337 -1.6894 25 6 -6.1460 -8.6197 -1.0173 26 6 -2.7137 -7.5415 -0.4158 27 6 -0.6321 -3.7530 -0.4219 28 6 0.0405 -2.5707 -0.5118 29 1 -0.4850 0.8400 -0.0004 30 1 2.8349 -3.4204 1.2618 31 1 1.6121 -5.5295 1.4225 32 1 -1.9708 -4.9196 -1.9282 33 1 -2.9035 -4.4152 -0.4931 34 1 -4.7294 -5.2067 -1.7040 35 1 -3.7071 -6.2564 -2.7370 36 1 -3.4041 -8.5173 -2.9723 37 1 -4.6670 -10.3202 -4.0765 38 1 -7.7700 -9.9643 -1.3434 39 1 -6.5955 -8.1583 -0.1504 40 1 -2.6984 -8.0657 0.5397 41 1 -2.3100 -8.1766 -1.2044 42 1 -1.5997 -3.8598 -0.8897 43 1 -0.3935 -1.7410 -1.0501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552135209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:54 Heat of formation + Delta-G solvation = 39.280016 kcal Electronic energy + Delta-G solvation = -25644.537059 eV Core-core repulsion = 22040.747605 eV Total energy + Delta-G solvation = -3603.789454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71460 -39.61071 -37.60660 -36.78858 -33.99881 -33.62350 -31.47894 -30.81119 -30.21616 -29.52902 -28.49801 -26.06441 -24.33231 -23.70987 -23.16546 -21.46034 -20.89242 -20.43928 -19.15455 -17.47880 -17.33081 -16.82328 -16.21347 -15.78303 -15.62843 -15.33289 -14.96938 -14.40455 -14.13215 -14.01453 -13.79377 -13.48204 -13.41755 -13.02561 -12.90392 -12.58489 -12.42711 -12.31014 -11.89693 -11.86848 -11.73332 -11.48800 -11.23475 -11.07893 -10.90446 -10.77643 -10.58193 -10.01597 -9.75228 -9.70329 -9.46765 -9.40122 -9.31265 -9.00066 -8.32582 -7.72464 -7.42302 -6.87869 -4.63891 0.88810 0.97478 2.17837 2.94267 2.96150 2.98752 3.00688 3.36367 3.54015 3.75889 3.83736 4.21213 4.26564 4.39337 4.50637 4.58141 4.70000 4.85565 4.90399 4.95663 5.20385 5.23301 5.39291 5.50022 5.52039 5.56719 5.61941 5.74626 5.78968 5.86443 5.89490 5.98929 6.12291 6.17928 6.28989 6.44660 6.61432 6.76699 6.87648 7.02670 7.14655 7.47250 7.60267 7.72528 7.79553 7.87747 8.06227 8.10653 8.43528 8.66440 8.75809 8.92806 10.00668 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025579 B = 0.002467 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.385394 B =11347.751115 C =12041.447273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.070 3.930 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.081 0.919 9 C 0.125 3.875 10 C -0.228 4.228 11 C -0.032 4.032 12 C -0.267 4.267 13 C 0.587 3.413 14 O -0.570 6.570 15 N -0.626 5.626 16 C 0.099 3.901 17 C -0.126 4.126 18 C -0.069 4.069 19 H 0.097 0.903 20 C -0.022 4.022 21 C -0.167 4.167 22 C 0.100 3.900 23 N -0.492 5.492 24 C 0.098 3.902 25 C -0.168 4.168 26 C 0.119 3.881 27 C -0.107 4.107 28 C -0.168 4.168 29 H 0.283 0.717 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.127 0.873 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 -8.770 -5.581 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.148 4.148 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.099 0.901 9 C 0.122 3.878 10 C -0.247 4.247 11 C -0.051 4.051 12 C -0.272 4.272 13 C 0.385 3.615 14 O -0.452 6.452 15 N -0.361 5.361 16 C -0.024 4.024 17 C -0.164 4.164 18 C -0.088 4.088 19 H 0.116 0.884 20 C -0.030 4.030 21 C -0.187 4.187 22 C -0.057 4.057 23 N -0.201 5.201 24 C -0.059 4.059 25 C -0.188 4.188 26 C -0.004 4.004 27 C -0.125 4.125 28 C -0.187 4.187 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.153 0.847 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.144 0.856 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.234 -9.716 -5.580 16.590 hybrid contribution 0.767 1.542 0.553 1.809 sum -11.468 -8.174 -5.027 14.953 Atomic orbital electron populations 1.69663 1.07575 1.29521 1.35089 1.26034 0.95015 1.01606 0.92139 0.86163 0.79879 0.79456 0.80091 1.18748 1.20157 1.18810 1.19727 0.95100 0.90208 1.42874 0.90101 1.17894 0.92014 0.91628 0.86306 1.20857 1.01707 0.95111 1.07036 1.20382 0.92892 0.96378 0.95429 1.18906 0.99003 0.93699 1.15547 1.18411 0.77892 0.87990 0.77238 1.90651 1.68024 1.45709 1.40804 1.48335 1.25618 1.11366 1.50780 1.22512 0.92779 0.91703 0.95398 1.22882 0.98060 0.96611 0.98859 1.21403 0.95420 0.93302 0.98674 0.88443 1.20068 0.93935 0.94902 0.94107 1.22079 1.01807 0.98045 0.96753 1.22758 0.90336 0.93961 0.98632 1.67672 1.11827 1.27840 1.12738 1.22750 0.99447 0.92518 0.91142 1.22086 0.95666 0.99208 1.01848 1.22169 0.88363 0.87832 1.02038 1.21916 0.99656 0.93429 0.97515 1.21318 0.97521 0.96479 1.03393 0.90547 0.88291 0.88146 0.89980 0.90082 0.89679 0.90265 0.84562 0.82748 0.82815 0.84712 0.90434 0.91678 0.85558 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.01 10.58 55.56 0.59 -18.42 16 2 C 0.07 1.65 5.42 -17.31 -0.09 1.55 16 3 Si 0.92 17.58 29.56 -169.99 -5.03 12.55 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.45 -11.21 9.03 -37.75 -0.34 -11.55 16 8 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 9 C 0.12 3.16 5.56 -106.80 -0.59 2.56 16 10 C -0.23 -5.49 9.73 -39.27 -0.38 -5.87 16 11 C -0.03 -0.74 9.52 -39.61 -0.38 -1.12 16 12 C -0.27 -6.05 5.89 -104.73 -0.62 -6.67 16 13 C 0.59 12.50 7.80 -12.42 -0.10 12.40 16 14 O -0.57 -13.66 16.59 5.29 0.09 -13.57 16 15 N -0.63 -10.33 3.34 -177.50 -0.59 -10.93 16 16 C 0.10 1.31 4.86 -3.06 -0.01 1.30 16 17 C -0.13 -1.22 6.37 -24.89 -0.16 -1.38 16 18 C -0.07 -0.69 3.29 -89.63 -0.29 -0.99 16 19 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 20 C -0.02 -0.20 5.01 -104.32 -0.52 -0.73 16 21 C -0.17 -1.52 8.43 -39.44 -0.33 -1.85 16 22 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 23 N -0.49 -5.21 10.36 -13.25 -0.14 -5.34 16 24 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 25 C -0.17 -1.43 9.79 -39.44 -0.39 -1.82 16 26 C 0.12 1.59 6.37 -2.35 -0.01 1.57 16 27 C -0.11 -2.31 8.53 -39.61 -0.34 -2.65 16 28 C -0.17 -4.04 8.61 -39.27 -0.34 -4.38 16 29 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 30 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.10 2.28 7.65 -52.49 -0.40 1.88 16 32 H 0.08 1.12 6.73 -51.93 -0.35 0.77 16 33 H 0.08 1.12 6.72 -51.93 -0.35 0.77 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.70 7.27 -51.93 -0.38 0.32 16 36 H 0.14 1.10 7.16 -52.48 -0.38 0.73 16 37 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.13 0.88 8.04 -52.49 -0.42 0.46 16 40 H 0.08 1.13 7.99 -51.93 -0.42 0.71 16 41 H 0.07 0.82 6.74 -51.93 -0.35 0.47 16 42 H 0.13 2.27 2.69 -60.29 -0.16 2.11 16 43 H 0.13 3.20 6.12 -52.48 -0.32 2.88 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -30.05 351.95 -10.25 -40.30 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.18 Total: 8.30 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -5.29 Total: -18.20 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.14 Total: -34.70 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.05 -10.25 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552135209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.581 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds