Wall clock time and date at job start Tue Mar 31 2020 13:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86792 * 120.00016 * 2 1 4 4 H 1.48499 * 109.47408 * 240.00264 * 3 2 1 5 5 H 1.48503 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47401 * 120.00206 * 3 2 1 7 7 C 1.40227 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99257 * 175.54012 * 7 2 1 9 9 C 1.41101 * 120.00377 * 355.53963 * 7 2 1 10 10 C 1.40892 * 120.10785 * 214.79452 * 9 7 2 11 11 C 1.36314 * 119.89567 * 179.97438 * 10 9 7 12 12 C 1.40013 * 120.10443 * 359.97438 * 11 10 9 13 13 C 1.47639 * 119.89304 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00381 * 7.39640 * 13 12 11 15 15 N 1.34775 * 119.99832 * 187.39318 * 13 12 11 16 16 C 1.47023 * 125.65178 * 354.23361 * 15 13 12 17 17 C 1.54329 * 107.40399 * 181.10070 * 16 15 13 18 18 C 1.55156 * 102.93947 * 22.11701 * 17 16 15 19 19 H 1.09000 * 111.00188 * 82.57324 * 18 17 16 20 20 C 1.50697 * 111.00242 * 206.42096 * 18 17 16 21 21 C 1.38649 * 120.79304 * 59.72260 * 20 18 17 22 22 C 1.38201 * 119.16387 * 179.75729 * 21 20 18 23 23 N 1.31865 * 120.76774 * 0.52452 * 22 21 20 24 24 C 1.31868 * 121.72231 * 359.74828 * 23 22 21 25 25 C 1.38207 * 120.76470 * 359.97375 * 24 23 22 26 26 C 1.47751 * 125.82417 * 174.14510 * 15 13 12 27 27 C 1.40015 * 120.20881 * 0.26278 * 12 11 10 28 28 C 1.36316 * 120.10742 * 359.47579 * 27 12 11 29 29 H 0.96999 * 120.00150 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.04855 * 359.95773 * 10 9 7 31 31 H 1.08000 * 119.94853 * 180.02562 * 11 10 9 32 32 H 1.09005 * 109.87943 * 61.60751 * 16 15 13 33 33 H 1.08992 * 109.88344 * 300.59767 * 16 15 13 34 34 H 1.08998 * 110.71640 * 140.47769 * 17 16 15 35 35 H 1.08996 * 110.72222 * 263.57820 * 17 16 15 36 36 H 1.08009 * 120.41489 * 0.02562 * 21 20 18 37 37 H 1.08005 * 119.61537 * 180.29741 * 22 21 20 38 38 H 1.08005 * 119.61876 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.41414 * 180.02562 * 25 24 23 40 40 H 1.08997 * 110.28798 * 37.01807 * 26 15 13 41 41 H 1.09006 * 110.42940 * 274.71133 * 26 15 13 42 42 H 1.08010 * 119.94282 * 179.73976 * 27 12 11 43 43 H 1.08005 * 120.05259 * 180.28229 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2754 2.7464 0.0006 6 1 3.0942 1.6964 1.2124 7 6 2.0075 -1.2144 -0.0005 8 1 3.0851 -1.2157 -0.0733 9 6 1.3052 -2.4346 0.0939 10 6 1.8658 -3.5202 0.7955 11 6 1.1834 -4.6969 0.8845 12 6 -0.0730 -4.8274 0.2806 13 6 -0.8079 -6.1041 0.3794 14 8 -0.3878 -6.9937 1.0939 15 7 -1.9445 -6.2835 -0.3223 16 6 -2.6263 -5.2583 -1.1258 17 6 -3.8938 -5.9064 -1.7217 18 6 -4.1565 -7.0994 -0.7652 19 1 -4.6924 -6.7745 0.1266 20 6 -4.9037 -8.2022 -1.4699 21 6 -4.3678 -8.8197 -2.5897 22 6 -5.0797 -9.8309 -3.2066 23 7 -6.2591 -10.2022 -2.7483 24 6 -6.8018 -9.6337 -1.6894 25 6 -6.1460 -8.6197 -1.0173 26 6 -2.7137 -7.5415 -0.4158 27 6 -0.6321 -3.7530 -0.4219 28 6 0.0405 -2.5707 -0.5118 29 1 -0.4850 0.8400 -0.0004 30 1 2.8349 -3.4204 1.2618 31 1 1.6121 -5.5295 1.4225 32 1 -1.9708 -4.9196 -1.9282 33 1 -2.9035 -4.4152 -0.4931 34 1 -4.7294 -5.2067 -1.7040 35 1 -3.7071 -6.2564 -2.7370 36 1 -3.4041 -8.5173 -2.9723 37 1 -4.6670 -10.3202 -4.0765 38 1 -7.7700 -9.9643 -1.3434 39 1 -6.5955 -8.1583 -0.1504 40 1 -2.6984 -8.0657 0.5397 41 1 -2.3100 -8.1766 -1.2044 42 1 -1.5997 -3.8598 -0.8897 43 1 -0.3935 -1.7410 -1.0501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552135209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:53 Heat of formation + Delta-G solvation = 23.666329 kcal Electronic energy + Delta-G solvation = -25645.214119 eV Core-core repulsion = 22040.747605 eV Total energy + Delta-G solvation = -3604.466514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64558 -40.83092 -39.12398 -38.34736 -35.64702 -34.78447 -32.32459 -32.07233 -31.47819 -31.29353 -29.68883 -27.73090 -25.52538 -24.53934 -24.09385 -23.07865 -22.48431 -21.40208 -20.68639 -19.28796 -18.19627 -18.13239 -17.30125 -17.07821 -16.67986 -16.50015 -16.28087 -15.91374 -15.32376 -15.02834 -14.87762 -14.71066 -14.57843 -14.34008 -14.29487 -13.96774 -13.82693 -13.65089 -13.44965 -13.17331 -12.82423 -12.72796 -12.58169 -12.55467 -12.36011 -12.18381 -11.75043 -11.67015 -11.20258 -11.07215 -10.75494 -10.42348 -10.36214 -10.04666 -9.72846 -9.55675 -9.25153 -8.64001 -6.51415 0.24489 0.27610 0.40442 1.12952 1.40477 1.44549 1.51810 2.03635 2.09910 2.19907 2.79700 2.85404 3.39802 3.55035 3.59114 3.64303 3.66465 3.94280 4.11168 4.14105 4.20431 4.23355 4.27696 4.34419 4.42847 4.49713 4.60276 4.73873 4.77049 4.82531 4.94227 4.95371 4.98677 5.06366 5.07425 5.11885 5.16254 5.31222 5.39885 5.46058 5.63585 5.81218 5.81410 5.97006 6.02655 6.25566 6.53316 6.58583 6.81722 6.90595 7.07000 7.29154 8.26942 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025579 B = 0.002467 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.385394 B =11347.751115 C =12041.447273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.482 4.482 8 H 0.080 0.920 9 C 0.096 3.904 10 C -0.241 4.241 11 C -0.044 4.044 12 C -0.276 4.276 13 C 0.583 3.417 14 O -0.606 6.606 15 N -0.620 5.620 16 C 0.088 3.912 17 C -0.112 4.112 18 C -0.053 4.053 19 H 0.106 0.894 20 C -0.030 4.030 21 C -0.171 4.171 22 C 0.089 3.911 23 N -0.517 5.517 24 C 0.090 3.910 25 C -0.166 4.166 26 C 0.113 3.887 27 C -0.097 4.097 28 C -0.186 4.186 29 H 0.292 0.708 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.145 0.855 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.156 0.844 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.165 0.835 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.872 -8.285 -6.530 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.511 4.511 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.261 4.261 11 C -0.064 4.064 12 C -0.281 4.281 13 C 0.379 3.621 14 O -0.491 6.491 15 N -0.353 5.353 16 C -0.034 4.034 17 C -0.150 4.150 18 C -0.072 4.072 19 H 0.125 0.875 20 C -0.039 4.039 21 C -0.190 4.190 22 C -0.067 4.067 23 N -0.227 5.227 24 C -0.067 4.067 25 C -0.186 4.186 26 C -0.009 4.009 27 C -0.114 4.114 28 C -0.206 4.206 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.162 0.838 37 H 0.189 0.811 38 H 0.193 0.807 39 H 0.174 0.826 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.182 0.818 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.260 -9.247 -6.562 18.218 hybrid contribution 1.289 1.260 0.834 1.986 sum -12.971 -7.986 -5.728 16.274 Atomic orbital electron populations 1.69700 1.08752 1.30913 1.34839 1.26867 0.95854 1.04478 0.91144 0.85102 0.78610 0.75135 0.80017 1.18131 1.18898 1.18872 1.19974 0.95365 0.91137 1.44625 0.90142 1.18254 0.93066 0.92288 0.87084 1.20984 1.02220 0.95325 1.07536 1.20531 0.93690 0.96261 0.95869 1.19224 0.98908 0.94903 1.15017 1.18197 0.79182 0.87041 0.77725 1.90622 1.69442 1.46437 1.42559 1.48282 1.24236 1.13490 1.49287 1.22678 0.94333 0.91406 0.94998 1.22855 0.96592 0.96538 0.98996 1.21267 0.93113 0.93576 0.99241 0.87547 1.20040 0.94413 0.95023 0.94375 1.22201 1.02110 0.97980 0.96736 1.23081 0.90170 0.94150 0.99251 1.67696 1.12568 1.28715 1.13700 1.23172 1.00338 0.92446 0.90724 1.22316 0.95267 0.98807 1.02185 1.22383 0.90280 0.86509 1.01700 1.22324 1.00756 0.92004 0.96342 1.21355 0.97743 0.97271 1.04205 0.89664 0.87759 0.88090 0.90006 0.90202 0.87175 0.88894 0.83767 0.81097 0.80660 0.82634 0.91938 0.90814 0.81839 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.17 10.58 21.87 0.23 -38.94 16 2 C 0.03 1.52 5.42 85.35 0.46 1.99 16 3 Si 0.99 35.59 29.56 68.60 2.03 37.62 16 4 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 5 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.48 -24.59 9.03 23.46 0.21 -24.38 16 8 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 9 C 0.10 5.01 5.56 -21.28 -0.12 4.89 16 10 C -0.24 -12.06 9.73 22.47 0.22 -11.85 16 11 C -0.04 -2.15 9.52 22.25 0.21 -1.94 16 12 C -0.28 -12.66 5.89 -19.93 -0.12 -12.77 16 13 C 0.58 24.86 7.80 86.73 0.68 25.53 16 14 O -0.61 -29.50 16.59 -3.98 -0.07 -29.57 16 15 N -0.62 -19.75 3.34 -833.74 -2.78 -22.53 16 16 C 0.09 2.12 4.86 86.73 0.42 2.54 16 17 C -0.11 -1.76 6.37 31.78 0.20 -1.56 16 18 C -0.05 -0.91 3.29 -10.15 -0.03 -0.94 16 19 H 0.11 1.68 8.03 -2.39 -0.02 1.66 16 20 C -0.03 -0.48 5.01 -19.67 -0.10 -0.57 16 21 C -0.17 -2.70 8.43 22.36 0.19 -2.51 16 22 C 0.09 1.49 11.18 84.68 0.95 2.44 16 23 N -0.52 -9.99 10.36 -195.84 -2.03 -12.02 16 24 C 0.09 1.38 11.18 84.68 0.95 2.33 16 25 C -0.17 -2.34 9.79 22.36 0.22 -2.12 16 26 C 0.11 2.85 6.37 86.79 0.55 3.40 16 27 C -0.10 -4.16 8.53 22.25 0.19 -3.97 16 28 C -0.19 -9.13 8.61 22.47 0.19 -8.93 16 29 H 0.29 12.58 8.29 -92.71 -0.77 11.81 16 30 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 31 H 0.10 4.78 7.65 -2.91 -0.02 4.76 16 32 H 0.08 2.04 6.73 -2.38 -0.02 2.03 16 33 H 0.08 2.01 6.72 -2.39 -0.02 2.00 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.27 7.27 -2.39 -0.02 1.25 16 36 H 0.14 1.98 7.16 -2.91 -0.02 1.96 16 37 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.16 1.47 8.04 -2.91 -0.02 1.45 16 40 H 0.06 1.78 7.99 -2.39 -0.02 1.76 16 41 H 0.07 1.74 6.74 -2.38 -0.02 1.73 16 42 H 0.17 5.66 2.69 -10.24 -0.03 5.63 16 43 H 0.12 6.19 6.12 -2.91 -0.02 6.17 16 Total: -1.00 -66.71 351.95 3.68 -63.03 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 1.02 Total: 30.84 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 5.28 Total: -28.43 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -4.58 Total: -73.49 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.07 Total: -29.57 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -66.71 3.68 -63.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552135209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.695 kcal (2) G-P(sol) polarization free energy of solvation -66.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds