Wall clock time and date at job start Tue Mar 31 2020 14:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48501 * 109.47169 * 239.99994 * 3 2 1 5 5 H 1.48498 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47196 * 119.99892 * 3 2 1 7 7 C 1.39933 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00539 * 175.51077 * 7 2 1 9 9 C 1.41436 * 119.99764 * 355.50515 * 7 2 1 10 10 C 1.40787 * 120.17697 * 214.76211 * 9 7 2 11 11 C 1.37716 * 120.04217 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.40732 * 359.75768 * 11 10 9 13 13 C 1.39884 * 120.35856 * 0.51840 * 12 11 10 14 14 C 1.47886 * 120.02310 * 179.73576 * 13 12 11 15 15 O 1.21544 * 119.99680 * 188.02547 * 14 13 12 16 16 N 1.34779 * 120.00216 * 8.02244 * 14 13 12 17 17 C 1.47023 * 125.64485 * 354.63970 * 16 14 13 18 18 C 1.54339 * 107.26207 * 178.84702 * 17 16 14 19 19 C 1.55156 * 103.02109 * 338.14284 * 18 17 16 20 20 H 1.09003 * 111.00478 * 277.22798 * 19 18 17 21 21 C 1.50700 * 111.03527 * 153.39539 * 19 18 17 22 22 C 1.38649 * 120.78850 * 306.04797 * 21 19 18 23 23 C 1.38212 * 119.15963 * 179.75598 * 22 21 19 24 24 N 1.31870 * 120.76295 * 0.53482 * 23 22 21 25 25 C 1.31877 * 121.72758 * 359.73996 * 24 23 22 26 26 C 1.38202 * 120.76218 * 359.97438 * 25 24 23 27 27 C 1.47422 * 125.64950 * 174.94333 * 16 14 13 28 28 C 1.39030 * 119.94804 * 359.46423 * 13 12 11 29 29 H 0.96999 * 120.00311 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.98167 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.79937 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.81994 * 180.26260 * 12 11 10 33 33 H 1.08996 * 109.88544 * 298.39408 * 17 16 14 34 34 H 1.09005 * 109.88225 * 59.56543 * 17 16 14 35 35 H 1.08999 * 110.84716 * 219.67225 * 18 17 16 36 36 H 1.08999 * 110.66883 * 96.52630 * 18 17 16 37 37 H 1.07988 * 120.42075 * 0.02562 * 22 21 19 38 38 H 1.07994 * 119.61795 * 180.29642 * 23 22 21 39 39 H 1.07993 * 119.61719 * 180.02562 * 25 24 23 40 40 H 1.08003 * 120.41898 * 180.02562 * 26 25 24 41 41 H 1.08999 * 110.36619 * 322.93668 * 27 16 14 42 42 H 1.08998 * 110.36026 * 85.14653 * 27 16 14 43 43 H 1.07999 * 120.20073 * 180.29140 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0855 -1.2133 -0.0727 9 6 1.3042 -2.4348 0.0971 10 6 1.8636 -3.5199 0.7982 11 6 1.1761 -4.7096 0.8900 12 6 -0.0682 -4.8467 0.3004 13 6 -0.6375 -3.7814 -0.4052 14 6 -1.9652 -3.9380 -1.0374 15 8 -2.3956 -3.0691 -1.7702 16 7 -2.6980 -5.0442 -0.8009 17 6 -2.2564 -6.2160 -0.0305 18 6 -3.4327 -7.2147 -0.0013 19 6 -4.6636 -6.3135 -0.2838 20 1 -5.0076 -5.8249 0.6278 21 6 -5.7767 -7.1030 -0.9231 22 6 -5.5516 -7.8437 -2.0733 23 6 -6.5955 -8.5594 -2.6286 24 7 -7.7958 -8.5344 -2.0830 25 6 -8.0476 -7.8368 -0.9926 26 6 -7.0518 -7.1012 -0.3784 27 6 -4.0726 -5.2823 -1.2773 28 6 0.0434 -2.5735 -0.5068 29 1 -0.4850 0.8400 -0.0004 30 1 2.8327 -3.4193 1.2644 31 1 1.6088 -5.5393 1.4292 32 1 -0.6009 -5.7826 0.3820 33 1 -1.3919 -6.6723 -0.5125 34 1 -2.0015 -5.9166 0.9862 35 1 -3.5167 -7.6866 0.9777 36 1 -3.3181 -7.9669 -0.7818 37 1 -4.5719 -7.8647 -2.5272 38 1 -6.4272 -9.1427 -3.5217 39 1 -9.0432 -7.8409 -0.5743 40 1 -7.2640 -6.5321 0.5147 41 1 -4.6486 -4.3573 -1.2513 42 1 -4.0584 -5.6913 -2.2875 43 1 -0.3944 -1.7469 -1.0466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556953647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:26 Heat of formation + Delta-G solvation = 42.117133 kcal Electronic energy + Delta-G solvation = -25788.493591 eV Core-core repulsion = 22184.827164 eV Total energy + Delta-G solvation = -3603.666427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74107 -39.66452 -37.59185 -36.75939 -34.04462 -33.45162 -31.49215 -30.80319 -30.20364 -29.42196 -28.61129 -25.36144 -24.74340 -23.83100 -23.10881 -21.62295 -20.88943 -20.49153 -19.14727 -17.66739 -17.33785 -16.53028 -15.90856 -15.78446 -15.58385 -15.30995 -14.90528 -14.66909 -14.11592 -14.07836 -13.79115 -13.50518 -13.43824 -13.04276 -12.96108 -12.67620 -12.43031 -12.25955 -12.01158 -11.79214 -11.70029 -11.56503 -11.13238 -11.01719 -10.86545 -10.53279 -10.26627 -10.01080 -9.76848 -9.74065 -9.54438 -9.41104 -9.28534 -9.00589 -8.37019 -7.64978 -7.39315 -6.64140 -4.45453 0.87719 0.96021 2.16439 2.82883 3.08757 3.10705 3.14763 3.29554 3.52665 3.78827 3.96272 4.19848 4.24621 4.36599 4.47962 4.65761 4.69532 4.83932 4.88858 4.93106 5.17261 5.20849 5.37729 5.44583 5.50031 5.53346 5.59027 5.69761 5.74709 5.81731 5.84099 5.94637 6.07750 6.15836 6.27032 6.43383 6.52547 6.71320 6.99434 7.01856 7.26263 7.38387 7.64208 7.71489 7.76155 7.89329 8.03906 8.20207 8.52356 8.81572 8.85064 8.88354 10.26802 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.002582 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.984751 B =10842.336970 C =11517.808580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.092 3.908 10 C -0.196 4.196 11 C -0.110 4.110 12 C -0.237 4.237 13 C -0.132 4.132 14 C 0.581 3.419 15 O -0.541 6.541 16 N -0.623 5.623 17 C 0.100 3.900 18 C -0.127 4.127 19 C -0.068 4.068 20 H 0.098 0.902 21 C -0.022 4.022 22 C -0.167 4.167 23 C 0.099 3.901 24 N -0.491 5.491 25 C 0.098 3.902 26 C -0.168 4.168 27 C 0.119 3.881 28 C -0.081 4.081 29 H 0.281 0.719 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.135 0.865 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -14.618 0.742 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.096 0.904 9 C 0.090 3.910 10 C -0.216 4.216 11 C -0.129 4.129 12 C -0.256 4.256 13 C -0.136 4.136 14 C 0.374 3.626 15 O -0.419 6.419 16 N -0.359 5.359 17 C -0.023 4.023 18 C -0.165 4.165 19 C -0.088 4.088 20 H 0.116 0.884 21 C -0.031 4.031 22 C -0.187 4.187 23 C -0.057 4.057 24 N -0.200 5.200 25 C -0.058 4.058 26 C -0.188 4.188 27 C -0.004 4.004 28 C -0.101 4.101 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.153 0.847 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.681 -14.351 -0.067 18.504 hybrid contribution 1.058 1.245 0.582 1.734 sum -10.624 -13.106 0.516 16.879 Atomic orbital electron populations 1.69714 1.07251 1.29253 1.36966 1.25913 0.94962 1.01312 0.92550 0.86220 0.79759 0.80069 0.79741 1.18979 1.20348 1.19089 1.19475 0.94718 0.89941 1.45461 0.90399 1.17647 0.91950 0.92361 0.89062 1.21306 1.00971 0.95096 1.04215 1.20513 0.95203 0.96724 1.00437 1.21766 0.98165 0.99320 1.06377 1.19465 0.93467 0.96931 1.03690 1.18648 0.84989 0.79016 0.79950 1.90713 1.72416 1.41021 1.37716 1.48331 1.14827 1.17711 1.55035 1.22520 0.96432 0.85893 0.97440 1.22900 0.93015 0.97419 1.03200 1.21404 0.92824 0.95497 0.99029 0.88363 1.20061 0.94281 0.94630 0.94094 1.22067 1.01241 0.98596 0.96753 1.22760 0.87991 0.96247 0.98710 1.67676 1.22724 1.19078 1.10566 1.22754 0.99364 0.92308 0.91403 1.22097 0.93352 1.01363 1.01939 1.22120 0.83392 0.98453 0.96409 1.21937 0.95503 0.94817 0.97888 0.90737 0.88572 0.88860 0.85553 0.90117 0.89833 0.89675 0.90297 0.84596 0.82752 0.82792 0.84673 0.90354 0.91617 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.64 10.60 55.55 0.59 -21.05 16 2 C 0.07 1.76 5.42 -17.35 -0.09 1.66 16 3 Si 0.92 19.13 29.56 -169.99 -5.03 14.11 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.47 -12.32 9.04 -37.73 -0.34 -12.66 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.09 2.43 5.55 -106.87 -0.59 1.84 16 10 C -0.20 -4.59 9.78 -38.81 -0.38 -4.97 16 11 C -0.11 -2.28 10.01 -39.72 -0.40 -2.68 16 12 C -0.24 -4.81 8.60 -38.92 -0.33 -5.14 16 13 C -0.13 -3.11 5.86 -105.04 -0.62 -3.72 16 14 C 0.58 12.80 7.80 -12.31 -0.10 12.70 16 15 O -0.54 -13.77 16.66 5.33 0.09 -13.68 16 16 N -0.62 -10.28 3.33 -176.01 -0.59 -10.87 16 17 C 0.10 1.25 4.87 -3.06 -0.01 1.23 16 18 C -0.13 -1.14 6.36 -24.89 -0.16 -1.30 16 19 C -0.07 -0.67 3.29 -89.63 -0.29 -0.97 16 20 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16 21 C -0.02 -0.20 5.01 -104.32 -0.52 -0.73 16 22 C -0.17 -1.48 8.40 -39.44 -0.33 -1.81 16 23 C 0.10 0.91 11.18 -17.54 -0.20 0.71 16 24 N -0.49 -5.16 10.36 -13.25 -0.14 -5.30 16 25 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 26 C -0.17 -1.42 9.78 -39.44 -0.39 -1.81 16 27 C 0.12 1.61 6.31 -2.53 -0.02 1.59 16 28 C -0.08 -2.17 8.21 -38.44 -0.32 -2.49 16 29 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 30 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 31 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 2.05 2.74 -58.18 -0.16 1.89 16 33 H 0.08 0.99 6.80 -51.93 -0.35 0.64 16 34 H 0.08 1.08 6.66 -51.93 -0.35 0.73 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.63 6.87 -51.93 -0.36 0.27 16 37 H 0.14 1.05 7.17 -52.49 -0.38 0.67 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.14 0.89 8.04 -52.48 -0.42 0.47 16 41 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 42 H 0.07 0.85 7.13 -51.93 -0.37 0.48 16 43 H 0.14 4.19 5.74 -52.49 -0.30 3.88 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -31.77 352.31 -10.23 -42.00 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.18 Total: 7.33 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -5.28 Total: -17.86 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.13 Total: -37.21 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.77 -10.23 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556953647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.119 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds