Wall clock time and date at job start Tue Mar 31 2020 14:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48501 * 109.47169 * 239.99994 * 3 2 1 5 5 H 1.48498 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47196 * 119.99892 * 3 2 1 7 7 C 1.39933 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00539 * 175.51077 * 7 2 1 9 9 C 1.41436 * 119.99764 * 355.50515 * 7 2 1 10 10 C 1.40787 * 120.17697 * 214.76211 * 9 7 2 11 11 C 1.37716 * 120.04217 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.40732 * 359.75768 * 11 10 9 13 13 C 1.39884 * 120.35856 * 0.51840 * 12 11 10 14 14 C 1.47886 * 120.02310 * 179.73576 * 13 12 11 15 15 O 1.21544 * 119.99680 * 188.02547 * 14 13 12 16 16 N 1.34779 * 120.00216 * 8.02244 * 14 13 12 17 17 C 1.47023 * 125.64485 * 354.63970 * 16 14 13 18 18 C 1.54339 * 107.26207 * 178.84702 * 17 16 14 19 19 C 1.55156 * 103.02109 * 338.14284 * 18 17 16 20 20 H 1.09003 * 111.00478 * 277.22798 * 19 18 17 21 21 C 1.50700 * 111.03527 * 153.39539 * 19 18 17 22 22 C 1.38649 * 120.78850 * 306.04797 * 21 19 18 23 23 C 1.38212 * 119.15963 * 179.75598 * 22 21 19 24 24 N 1.31870 * 120.76295 * 0.53482 * 23 22 21 25 25 C 1.31877 * 121.72758 * 359.73996 * 24 23 22 26 26 C 1.38202 * 120.76218 * 359.97438 * 25 24 23 27 27 C 1.47422 * 125.64950 * 174.94333 * 16 14 13 28 28 C 1.39030 * 119.94804 * 359.46423 * 13 12 11 29 29 H 0.96999 * 120.00311 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.98167 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.79937 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.81994 * 180.26260 * 12 11 10 33 33 H 1.08996 * 109.88544 * 298.39408 * 17 16 14 34 34 H 1.09005 * 109.88225 * 59.56543 * 17 16 14 35 35 H 1.08999 * 110.84716 * 219.67225 * 18 17 16 36 36 H 1.08999 * 110.66883 * 96.52630 * 18 17 16 37 37 H 1.07988 * 120.42075 * 0.02562 * 22 21 19 38 38 H 1.07994 * 119.61795 * 180.29642 * 23 22 21 39 39 H 1.07993 * 119.61719 * 180.02562 * 25 24 23 40 40 H 1.08003 * 120.41898 * 180.02562 * 26 25 24 41 41 H 1.08999 * 110.36619 * 322.93668 * 27 16 14 42 42 H 1.08998 * 110.36026 * 85.14653 * 27 16 14 43 43 H 1.07999 * 120.20073 * 180.29140 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0855 -1.2133 -0.0727 9 6 1.3042 -2.4348 0.0971 10 6 1.8636 -3.5199 0.7982 11 6 1.1761 -4.7096 0.8900 12 6 -0.0682 -4.8467 0.3004 13 6 -0.6375 -3.7814 -0.4052 14 6 -1.9652 -3.9380 -1.0374 15 8 -2.3956 -3.0691 -1.7702 16 7 -2.6980 -5.0442 -0.8009 17 6 -2.2564 -6.2160 -0.0305 18 6 -3.4327 -7.2147 -0.0013 19 6 -4.6636 -6.3135 -0.2838 20 1 -5.0076 -5.8249 0.6278 21 6 -5.7767 -7.1030 -0.9231 22 6 -5.5516 -7.8437 -2.0733 23 6 -6.5955 -8.5594 -2.6286 24 7 -7.7958 -8.5344 -2.0830 25 6 -8.0476 -7.8368 -0.9926 26 6 -7.0518 -7.1012 -0.3784 27 6 -4.0726 -5.2823 -1.2773 28 6 0.0434 -2.5735 -0.5068 29 1 -0.4850 0.8400 -0.0004 30 1 2.8327 -3.4193 1.2644 31 1 1.6088 -5.5393 1.4292 32 1 -0.6009 -5.7826 0.3820 33 1 -1.3919 -6.6723 -0.5125 34 1 -2.0015 -5.9166 0.9862 35 1 -3.5167 -7.6866 0.9777 36 1 -3.3181 -7.9669 -0.7818 37 1 -4.5719 -7.8647 -2.5272 38 1 -6.4272 -9.1427 -3.5217 39 1 -9.0432 -7.8409 -0.5743 40 1 -7.2640 -6.5321 0.5147 41 1 -4.6486 -4.3573 -1.2513 42 1 -4.0584 -5.6913 -2.2875 43 1 -0.3944 -1.7469 -1.0466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556953647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:25 Heat of formation + Delta-G solvation = 23.684031 kcal Electronic energy + Delta-G solvation = -25789.292910 eV Core-core repulsion = 22184.827164 eV Total energy + Delta-G solvation = -3604.465746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68834 -40.86474 -39.06296 -38.38409 -35.63772 -34.73006 -32.32443 -32.08097 -31.49345 -31.14365 -29.78435 -27.16610 -25.99844 -24.58256 -24.00418 -23.15706 -22.53522 -21.41008 -20.70705 -19.37412 -18.15655 -17.70547 -17.27136 -17.06027 -16.61650 -16.51548 -16.41387 -16.22645 -15.27158 -15.03446 -14.86860 -14.78054 -14.57171 -14.37026 -14.31925 -14.14438 -13.86272 -13.55565 -13.41043 -13.06786 -12.82280 -12.67757 -12.61595 -12.55311 -12.31175 -11.90191 -11.84852 -11.65078 -11.26730 -11.12741 -10.79790 -10.41646 -10.38598 -10.05098 -9.79680 -9.42498 -9.24401 -8.51731 -6.43900 0.24126 0.26794 0.36215 1.03242 1.35743 1.46665 1.49389 1.93961 2.06397 2.21491 2.81593 2.85220 3.39617 3.51721 3.58854 3.64196 3.66081 3.93842 3.98294 4.15956 4.21245 4.23844 4.26638 4.36013 4.48885 4.58080 4.66497 4.72783 4.76548 4.81341 4.87698 4.94875 5.01097 5.07090 5.10932 5.13823 5.19181 5.33960 5.39964 5.45851 5.54770 5.81054 5.84491 5.93765 6.10406 6.30972 6.41433 6.63728 6.91329 6.96570 7.06686 7.19437 8.40141 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.002582 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.984751 B =10842.336970 C =11517.808580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.020 3.980 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.502 4.502 8 H 0.081 0.919 9 C 0.056 3.944 10 C -0.199 4.199 11 C -0.107 4.107 12 C -0.213 4.213 13 C -0.145 4.145 14 C 0.571 3.429 15 O -0.593 6.593 16 N -0.614 5.614 17 C 0.084 3.916 18 C -0.112 4.112 19 C -0.053 4.053 20 H 0.105 0.895 21 C -0.031 4.031 22 C -0.169 4.169 23 C 0.089 3.911 24 N -0.517 5.517 25 C 0.089 3.911 26 C -0.168 4.168 27 C 0.112 3.888 28 C -0.122 4.122 29 H 0.281 0.719 30 H 0.110 0.890 31 H 0.144 0.856 32 H 0.177 0.823 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.154 0.846 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 -17.881 2.302 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.191 4.191 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.533 4.533 8 H 0.099 0.901 9 C 0.055 3.945 10 C -0.219 4.219 11 C -0.125 4.125 12 C -0.232 4.232 13 C -0.148 4.148 14 C 0.364 3.636 15 O -0.475 6.475 16 N -0.347 5.347 17 C -0.037 4.037 18 C -0.149 4.149 19 C -0.072 4.072 20 H 0.123 0.877 21 C -0.039 4.039 22 C -0.188 4.188 23 C -0.067 4.067 24 N -0.227 5.227 25 C -0.067 4.067 26 C -0.187 4.187 27 C -0.010 4.010 28 C -0.143 4.143 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.161 0.839 32 H 0.193 0.807 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.165 0.835 38 H 0.190 0.810 39 H 0.192 0.808 40 H 0.172 0.828 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.765 -17.693 1.517 21.301 hybrid contribution 0.971 1.998 0.101 2.224 sum -10.794 -15.694 1.618 19.117 Atomic orbital electron populations 1.69883 1.08942 1.29857 1.38862 1.26860 0.95663 1.04860 0.91693 0.85136 0.78357 0.75332 0.80133 1.18360 1.19939 1.17910 1.19771 0.94998 0.91035 1.47511 0.90108 1.17995 0.92441 0.93736 0.90372 1.21614 1.01625 0.95282 1.03370 1.21056 0.94829 0.96972 0.99642 1.22439 0.97865 0.99870 1.02985 1.19763 0.94253 0.96800 1.03975 1.18546 0.85137 0.80108 0.79827 1.90674 1.73424 1.43356 1.40084 1.48274 1.15488 1.17003 1.53945 1.22822 0.98810 0.85100 0.96935 1.22889 0.90148 0.96334 1.05570 1.21270 0.93405 0.94561 0.97972 0.87672 1.20042 0.94349 0.94971 0.94554 1.22212 1.01741 0.98279 0.96609 1.23106 0.87746 0.96510 0.99325 1.67698 1.23543 1.19988 1.11454 1.23154 1.00520 0.91968 0.91085 1.22322 0.92899 1.01055 1.02439 1.22334 0.81687 0.98855 0.98140 1.21695 0.96919 0.95568 1.00076 0.90868 0.87188 0.83869 0.80694 0.88899 0.89425 0.86757 0.88599 0.83469 0.81005 0.80768 0.82815 0.92577 0.90896 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.85 10.60 21.82 0.23 -48.61 16 2 C 0.02 1.10 5.42 85.25 0.46 1.56 16 3 Si 0.99 40.82 29.56 68.60 2.03 42.85 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.50 -27.92 9.04 23.47 0.21 -27.71 16 8 H 0.08 4.23 7.85 -2.91 -0.02 4.20 16 9 C 0.06 3.11 5.55 -21.32 -0.12 2.99 16 10 C -0.20 -9.20 9.78 22.77 0.22 -8.98 16 11 C -0.11 -4.08 10.01 22.18 0.22 -3.86 16 12 C -0.21 -8.08 8.60 22.70 0.20 -7.89 16 13 C -0.14 -6.91 5.86 -20.13 -0.12 -7.03 16 14 C 0.57 25.87 7.80 86.80 0.68 26.55 16 15 O -0.59 -32.20 16.66 -3.85 -0.06 -32.27 16 16 N -0.61 -19.55 3.33 -829.06 -2.76 -22.30 16 17 C 0.08 1.78 4.87 86.73 0.42 2.20 16 18 C -0.11 -1.47 6.36 31.79 0.20 -1.26 16 19 C -0.05 -0.88 3.29 -10.15 -0.03 -0.91 16 20 H 0.11 1.65 8.03 -2.39 -0.02 1.63 16 21 C -0.03 -0.48 5.01 -19.67 -0.10 -0.57 16 22 C -0.17 -2.54 8.40 22.36 0.19 -2.35 16 23 C 0.09 1.44 11.18 84.68 0.95 2.39 16 24 N -0.52 -9.92 10.36 -195.84 -2.03 -11.95 16 25 C 0.09 1.38 11.18 84.68 0.95 2.33 16 26 C -0.17 -2.39 9.78 22.36 0.22 -2.17 16 27 C 0.11 2.90 6.31 86.85 0.55 3.45 16 28 C -0.12 -6.92 8.21 23.01 0.19 -6.73 16 29 H 0.28 15.04 8.30 -92.71 -0.77 14.28 16 30 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.18 4.85 2.74 -8.26 -0.02 4.82 16 33 H 0.09 1.81 6.80 -2.39 -0.02 1.79 16 34 H 0.09 1.85 6.66 -2.38 -0.02 1.83 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.01 6.87 -2.39 -0.02 1.00 16 37 H 0.15 1.81 7.17 -2.92 -0.02 1.79 16 38 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.15 1.54 8.04 -2.91 -0.02 1.52 16 41 H 0.06 1.70 8.09 -2.39 -0.02 1.69 16 42 H 0.07 1.79 7.13 -2.39 -0.02 1.78 16 43 H 0.10 6.63 5.74 -2.91 -0.02 6.61 16 Total: -1.00 -76.85 352.31 3.72 -73.13 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 1.03 Total: 27.17 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 5.29 Total: -28.00 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -4.55 Total: -82.87 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.06 Total: -32.27 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -76.85 3.72 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556953647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.811 kcal (2) G-P(sol) polarization free energy of solvation -76.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds