Wall clock time and date at job start Tue Mar 31 2020 14:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48505 * 109.47000 * 90.00299 * 3 2 1 5 5 H 1.48501 * 109.47156 * 210.00082 * 3 2 1 6 6 H 1.48500 * 109.47300 * 329.99988 * 3 2 1 7 7 C 1.39936 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 173.64419 * 7 2 1 9 9 C 1.41436 * 120.00098 * 353.64616 * 7 2 1 10 10 C 1.40791 * 120.17501 * 153.81275 * 9 7 2 11 11 C 1.37716 * 120.03765 * 180.02562 * 10 9 7 12 12 C 1.38365 * 120.41088 * 359.97298 * 11 10 9 13 13 C 1.39877 * 120.36186 * 0.02562 * 12 11 10 14 14 C 1.47886 * 120.02635 * 180.02562 * 13 12 11 15 15 O 1.21551 * 120.00125 * 187.72251 * 14 13 12 16 16 N 1.34776 * 120.00051 * 7.71975 * 14 13 12 17 17 C 1.47026 * 125.64764 * 353.79909 * 16 14 13 18 18 C 1.54317 * 107.27353 * 180.96699 * 17 16 14 19 19 C 1.55156 * 102.86332 * 22.52867 * 18 17 16 20 20 H 1.09004 * 111.03686 * 82.39207 * 19 18 17 21 21 C 1.50701 * 111.00324 * 206.22400 * 19 18 17 22 22 C 1.38652 * 120.78890 * 53.36939 * 21 19 18 23 23 C 1.38198 * 119.16475 * 179.79508 * 22 21 19 24 24 N 1.31871 * 120.76179 * 0.48990 * 23 22 21 25 25 C 1.31867 * 121.72544 * 359.74239 * 24 23 22 26 26 C 1.38200 * 120.76788 * 0.02562 * 25 24 23 27 27 C 1.47425 * 125.65071 * 174.11138 * 16 14 13 28 28 C 1.39034 * 119.95041 * 359.74340 * 13 12 11 29 29 H 0.96999 * 119.99520 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.98366 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.78921 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.81761 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.88252 * 300.51297 * 17 16 14 34 34 H 1.09002 * 109.87986 * 61.68166 * 17 16 14 35 35 H 1.08994 * 110.92486 * 264.11074 * 18 17 16 36 36 H 1.09001 * 110.74009 * 140.85712 * 18 17 16 37 37 H 1.08007 * 120.41574 * 0.02562 * 22 21 19 38 38 H 1.08006 * 119.61853 * 180.25272 * 23 22 21 39 39 H 1.08001 * 119.61692 * 179.97438 * 25 24 23 40 40 H 1.07994 * 120.42297 * 180.02562 * 26 25 24 41 41 H 1.09001 * 110.36208 * 274.67558 * 27 16 14 42 42 H 1.09002 * 110.36917 * 36.98681 * 27 16 14 43 43 H 1.07993 * 120.20871 * 180.28175 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 1.4001 5 1 3.5399 1.4401 -0.7001 6 1 1.4399 2.6526 -0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0829 -1.2149 -0.1041 9 6 1.3071 -2.4331 0.1345 10 6 1.8479 -3.6214 -0.3925 11 6 1.1629 -4.8087 -0.2599 12 6 -0.0579 -4.8441 0.3904 13 6 -0.6108 -3.6737 0.9204 14 6 -1.9159 -3.7202 1.6145 15 8 -2.4626 -2.6880 1.9507 16 7 -2.4990 -4.9072 1.8744 17 6 -2.0169 -6.2177 1.4142 18 6 -3.0114 -7.2789 1.9304 19 6 -4.3053 -6.4551 2.1637 20 1 -4.8589 -6.3243 1.2339 21 6 -5.1705 -7.0954 3.2185 22 6 -4.6538 -7.4078 4.4666 23 6 -5.4784 -7.9905 5.4102 24 7 -6.7392 -8.2579 5.1312 25 6 -7.2630 -7.9790 3.9536 26 6 -6.5005 -7.3915 2.9619 27 6 -3.7296 -5.1060 2.6616 28 6 0.0701 -2.4676 0.7993 29 1 -0.4849 0.8401 0.0004 30 1 2.8001 -3.6016 -0.9017 31 1 1.5813 -5.7178 -0.6661 32 1 -0.5867 -5.7806 0.4893 33 1 -1.9821 -6.2384 0.3250 34 1 -1.0252 -6.4121 1.8227 35 1 -2.6610 -7.7193 2.8638 36 1 -3.1761 -8.0512 1.1792 37 1 -3.6209 -7.1950 4.6998 38 1 -5.0846 -8.2332 6.3863 39 1 -8.2997 -8.2131 3.7615 40 1 -6.9352 -7.1651 1.9996 41 1 -3.4948 -5.1628 3.7245 42 1 -4.4364 -4.2983 2.4711 43 1 -0.3509 -1.5623 1.2110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556953649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:29 Heat of formation + Delta-G solvation = 42.476123 kcal Electronic energy + Delta-G solvation = -25794.583060 eV Core-core repulsion = 22190.932200 eV Total energy + Delta-G solvation = -3603.650860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73824 -39.65164 -37.57964 -36.74151 -34.06545 -33.48562 -31.49052 -30.79932 -30.19813 -29.37901 -28.60663 -25.38284 -24.72731 -23.83269 -23.09802 -21.61039 -20.88144 -20.48864 -19.12556 -17.67661 -17.34435 -16.53570 -15.89649 -15.76334 -15.60579 -15.29529 -14.88883 -14.64429 -14.12804 -14.09974 -13.78210 -13.52385 -13.41287 -13.02566 -12.97106 -12.69169 -12.35815 -12.27663 -11.99905 -11.81428 -11.68044 -11.51130 -11.14440 -11.00995 -10.85332 -10.57067 -10.24265 -9.98027 -9.76673 -9.73531 -9.53155 -9.40985 -9.28633 -9.00761 -8.34953 -7.63997 -7.45701 -6.68583 -4.44365 0.87944 0.96288 2.19065 2.82220 3.07533 3.10523 3.14917 3.31196 3.53039 3.80141 3.92680 4.20013 4.24696 4.37228 4.48505 4.64725 4.68721 4.84242 4.89109 4.93170 5.18918 5.20343 5.38053 5.46737 5.50245 5.58683 5.59781 5.71597 5.75161 5.82422 5.85493 5.95658 6.10317 6.16213 6.31146 6.43635 6.54648 6.73753 6.99395 7.04411 7.25939 7.39086 7.66627 7.71726 7.77558 7.92568 8.04246 8.19730 8.52895 8.80878 8.85210 8.88666 10.20221 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025547 B = 0.002590 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.762168 B =10809.602249 C =11502.081882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.067 3.933 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.092 3.908 10 C -0.206 4.206 11 C -0.105 4.105 12 C -0.247 4.247 13 C -0.129 4.129 14 C 0.580 3.420 15 O -0.540 6.540 16 N -0.624 5.624 17 C 0.101 3.899 18 C -0.128 4.128 19 C -0.069 4.069 20 H 0.097 0.903 21 C -0.022 4.022 22 C -0.167 4.167 23 C 0.099 3.901 24 N -0.491 5.491 25 C 0.098 3.902 26 C -0.168 4.168 27 C 0.118 3.882 28 C -0.091 4.091 29 H 0.283 0.717 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.135 0.865 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 -14.782 4.818 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.187 1.187 6 H -0.202 1.202 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.090 3.910 10 C -0.226 4.226 11 C -0.123 4.123 12 C -0.266 4.266 13 C -0.132 4.132 14 C 0.373 3.627 15 O -0.418 6.418 16 N -0.360 5.360 17 C -0.022 4.022 18 C -0.166 4.166 19 C -0.088 4.088 20 H 0.116 0.884 21 C -0.031 4.031 22 C -0.187 4.187 23 C -0.057 4.057 24 N -0.200 5.200 25 C -0.058 4.058 26 C -0.188 4.188 27 C -0.005 4.005 28 C -0.111 4.111 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.153 0.847 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.177 -14.327 5.611 18.448 hybrid contribution 0.895 1.102 -0.816 1.638 sum -9.282 -13.225 4.794 16.853 Atomic orbital electron populations 1.69737 1.07301 1.29328 1.35562 1.25979 0.94953 1.01515 0.92560 0.86182 0.80136 0.80351 0.79279 1.19300 1.18666 1.20190 1.19595 0.95119 0.90019 1.43926 0.90288 1.17643 0.91881 0.92487 0.89032 1.21188 1.01391 0.93594 1.06407 1.20484 0.95386 0.96538 0.99941 1.21714 0.98763 0.97600 1.08490 1.19433 0.93814 0.95828 1.04145 1.18677 0.85282 0.80873 0.77845 1.90718 1.65064 1.32396 1.53579 1.48331 1.26736 1.06316 1.54581 1.22505 0.97707 0.82194 0.99811 1.22906 0.93582 0.97550 1.02519 1.21411 0.95264 0.95006 0.97106 0.88423 1.20065 0.93892 0.94682 0.94429 1.22073 1.01846 1.00742 0.94000 1.22761 0.89209 0.94447 0.99278 1.67673 1.13705 1.17598 1.21073 1.22751 1.00066 0.94495 0.88527 1.22090 0.94260 1.01102 1.01331 1.22129 0.87210 0.95740 0.95401 1.21962 0.95591 0.95978 0.97583 0.90589 0.88727 0.88979 0.85634 0.90103 0.89858 0.90211 0.89736 0.84567 0.82741 0.82804 0.84699 0.91605 0.90259 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.26 10.47 55.55 0.58 -20.68 16 2 C 0.07 1.71 5.34 -17.34 -0.09 1.62 16 3 Si 0.92 18.96 29.56 -169.99 -5.03 13.94 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.05 9.08 -37.73 -0.34 -12.39 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.09 2.44 5.60 -106.87 -0.60 1.84 16 10 C -0.21 -4.86 9.78 -38.81 -0.38 -5.24 16 11 C -0.11 -2.20 10.01 -39.73 -0.40 -2.60 16 12 C -0.25 -5.05 8.62 -38.92 -0.34 -5.39 16 13 C -0.13 -3.05 5.87 -105.04 -0.62 -3.66 16 14 C 0.58 12.85 7.80 -12.31 -0.10 12.75 16 15 O -0.54 -13.82 16.59 5.32 0.09 -13.73 16 16 N -0.62 -10.33 3.33 -176.31 -0.59 -10.92 16 17 C 0.10 1.27 4.86 -3.07 -0.01 1.25 16 18 C -0.13 -1.15 6.36 -24.90 -0.16 -1.31 16 19 C -0.07 -0.67 3.28 -89.63 -0.29 -0.97 16 20 H 0.10 0.91 8.03 -51.93 -0.42 0.50 16 21 C -0.02 -0.20 5.01 -104.32 -0.52 -0.73 16 22 C -0.17 -1.49 8.41 -39.44 -0.33 -1.82 16 23 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16 24 N -0.49 -5.17 10.36 -13.25 -0.14 -5.31 16 25 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 26 C -0.17 -1.42 9.78 -39.44 -0.39 -1.81 16 27 C 0.12 1.59 6.36 -2.53 -0.02 1.58 16 28 C -0.09 -2.44 8.24 -38.44 -0.32 -2.76 16 29 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 30 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 31 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.13 2.07 2.72 -58.56 -0.16 1.91 16 33 H 0.08 1.03 6.74 -51.93 -0.35 0.68 16 34 H 0.08 1.06 6.74 -51.93 -0.35 0.71 16 35 H 0.08 0.65 6.83 -51.93 -0.35 0.29 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.14 1.06 7.16 -52.48 -0.38 0.69 16 38 H 0.16 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 0.88 8.04 -52.49 -0.42 0.46 16 41 H 0.07 0.85 7.17 -51.93 -0.37 0.48 16 42 H 0.08 1.18 7.98 -51.93 -0.41 0.77 16 43 H 0.15 4.24 5.46 -52.49 -0.29 3.95 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -31.78 351.80 -10.23 -42.01 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.16 Total: 7.63 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -5.29 Total: -18.24 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.14 Total: -36.91 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.78 -10.23 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556953649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.485 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds