Wall clock time and date at job start Tue Mar 31 2020 14:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48505 * 109.47000 * 90.00299 * 3 2 1 5 5 H 1.48501 * 109.47156 * 210.00082 * 3 2 1 6 6 H 1.48500 * 109.47300 * 329.99988 * 3 2 1 7 7 C 1.39936 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 173.64419 * 7 2 1 9 9 C 1.41436 * 120.00098 * 353.64616 * 7 2 1 10 10 C 1.40791 * 120.17501 * 153.81275 * 9 7 2 11 11 C 1.37716 * 120.03765 * 180.02562 * 10 9 7 12 12 C 1.38365 * 120.41088 * 359.97298 * 11 10 9 13 13 C 1.39877 * 120.36186 * 0.02562 * 12 11 10 14 14 C 1.47886 * 120.02635 * 180.02562 * 13 12 11 15 15 O 1.21551 * 120.00125 * 187.72251 * 14 13 12 16 16 N 1.34776 * 120.00051 * 7.71975 * 14 13 12 17 17 C 1.47026 * 125.64764 * 353.79909 * 16 14 13 18 18 C 1.54317 * 107.27353 * 180.96699 * 17 16 14 19 19 C 1.55156 * 102.86332 * 22.52867 * 18 17 16 20 20 H 1.09004 * 111.03686 * 82.39207 * 19 18 17 21 21 C 1.50701 * 111.00324 * 206.22400 * 19 18 17 22 22 C 1.38652 * 120.78890 * 53.36939 * 21 19 18 23 23 C 1.38198 * 119.16475 * 179.79508 * 22 21 19 24 24 N 1.31871 * 120.76179 * 0.48990 * 23 22 21 25 25 C 1.31867 * 121.72544 * 359.74239 * 24 23 22 26 26 C 1.38200 * 120.76788 * 0.02562 * 25 24 23 27 27 C 1.47425 * 125.65071 * 174.11138 * 16 14 13 28 28 C 1.39034 * 119.95041 * 359.74340 * 13 12 11 29 29 H 0.96999 * 119.99520 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.98366 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.78921 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.81761 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.88252 * 300.51297 * 17 16 14 34 34 H 1.09002 * 109.87986 * 61.68166 * 17 16 14 35 35 H 1.08994 * 110.92486 * 264.11074 * 18 17 16 36 36 H 1.09001 * 110.74009 * 140.85712 * 18 17 16 37 37 H 1.08007 * 120.41574 * 0.02562 * 22 21 19 38 38 H 1.08006 * 119.61853 * 180.25272 * 23 22 21 39 39 H 1.08001 * 119.61692 * 179.97438 * 25 24 23 40 40 H 1.07994 * 120.42297 * 180.02562 * 26 25 24 41 41 H 1.09001 * 110.36208 * 274.67558 * 27 16 14 42 42 H 1.09002 * 110.36917 * 36.98681 * 27 16 14 43 43 H 1.07993 * 120.20871 * 180.28175 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 1.4001 5 1 3.5399 1.4401 -0.7001 6 1 1.4399 2.6526 -0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0829 -1.2149 -0.1041 9 6 1.3071 -2.4331 0.1345 10 6 1.8479 -3.6214 -0.3925 11 6 1.1629 -4.8087 -0.2599 12 6 -0.0579 -4.8441 0.3904 13 6 -0.6108 -3.6737 0.9204 14 6 -1.9159 -3.7202 1.6145 15 8 -2.4626 -2.6880 1.9507 16 7 -2.4990 -4.9072 1.8744 17 6 -2.0169 -6.2177 1.4142 18 6 -3.0114 -7.2789 1.9304 19 6 -4.3053 -6.4551 2.1637 20 1 -4.8589 -6.3243 1.2339 21 6 -5.1705 -7.0954 3.2185 22 6 -4.6538 -7.4078 4.4666 23 6 -5.4784 -7.9905 5.4102 24 7 -6.7392 -8.2579 5.1312 25 6 -7.2630 -7.9790 3.9536 26 6 -6.5005 -7.3915 2.9619 27 6 -3.7296 -5.1060 2.6616 28 6 0.0701 -2.4676 0.7993 29 1 -0.4849 0.8401 0.0004 30 1 2.8001 -3.6016 -0.9017 31 1 1.5813 -5.7178 -0.6661 32 1 -0.5867 -5.7806 0.4893 33 1 -1.9821 -6.2384 0.3250 34 1 -1.0252 -6.4121 1.8227 35 1 -2.6610 -7.7193 2.8638 36 1 -3.1761 -8.0512 1.1792 37 1 -3.6209 -7.1950 4.6998 38 1 -5.0846 -8.2332 6.3863 39 1 -8.2997 -8.2131 3.7615 40 1 -6.9352 -7.1651 1.9996 41 1 -3.4948 -5.1628 3.7245 42 1 -4.4364 -4.2983 2.4711 43 1 -0.3509 -1.5623 1.2110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556953649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:28 Heat of formation + Delta-G solvation = 24.081738 kcal Electronic energy + Delta-G solvation = -25795.380701 eV Core-core repulsion = 22190.932200 eV Total energy + Delta-G solvation = -3604.448500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68373 -40.85904 -39.05861 -38.37380 -35.68930 -34.73185 -32.32709 -32.08254 -31.48466 -31.11411 -29.78285 -27.18460 -25.98514 -24.58619 -23.99707 -23.15666 -22.52643 -21.41095 -20.69215 -19.39291 -18.16315 -17.70846 -17.26110 -17.07066 -16.61256 -16.50718 -16.41113 -16.17113 -15.35716 -15.02390 -14.87679 -14.76125 -14.56366 -14.38345 -14.32228 -14.14201 -13.81594 -13.46612 -13.43832 -13.06649 -12.83269 -12.68336 -12.59661 -12.55068 -12.35181 -11.86586 -11.82836 -11.64604 -11.26358 -11.13289 -10.79015 -10.42254 -10.37719 -10.05022 -9.78447 -9.44489 -9.29777 -8.55382 -6.41878 0.24246 0.27004 0.37807 1.02706 1.35205 1.46722 1.50407 1.95966 2.05955 2.19158 2.80548 2.84977 3.40099 3.52409 3.59976 3.64500 3.70411 3.94202 3.99988 4.15723 4.21184 4.24289 4.26675 4.35934 4.49738 4.59169 4.69253 4.73898 4.77171 4.80964 4.89570 4.95080 5.01166 5.07370 5.09428 5.13933 5.21003 5.34738 5.40569 5.46017 5.54869 5.81168 5.85721 5.95557 6.11711 6.30407 6.41950 6.64623 6.89083 6.96936 7.06785 7.20762 8.34780 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025547 B = 0.002590 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.762168 B =10809.602249 C =11502.081882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.020 3.980 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.251 1.251 6 H -0.271 1.271 7 C -0.494 4.494 8 H 0.082 0.918 9 C 0.057 3.943 10 C -0.210 4.210 11 C -0.103 4.103 12 C -0.224 4.224 13 C -0.142 4.142 14 C 0.571 3.429 15 O -0.592 6.592 16 N -0.615 5.615 17 C 0.085 3.915 18 C -0.112 4.112 19 C -0.053 4.053 20 H 0.107 0.893 21 C -0.031 4.031 22 C -0.169 4.169 23 C 0.089 3.911 24 N -0.517 5.517 25 C 0.089 3.911 26 C -0.167 4.167 27 C 0.111 3.889 28 C -0.133 4.133 29 H 0.283 0.717 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.175 0.825 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.211 -18.258 4.327 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.190 1.190 5 H -0.174 1.174 6 H -0.196 1.196 7 C -0.524 4.524 8 H 0.101 0.899 9 C 0.055 3.945 10 C -0.230 4.230 11 C -0.121 4.121 12 C -0.242 4.242 13 C -0.145 4.145 14 C 0.363 3.637 15 O -0.474 6.474 16 N -0.347 5.347 17 C -0.036 4.036 18 C -0.150 4.150 19 C -0.072 4.072 20 H 0.125 0.875 21 C -0.039 4.039 22 C -0.189 4.189 23 C -0.067 4.067 24 N -0.227 5.227 25 C -0.067 4.067 26 C -0.187 4.187 27 C -0.011 4.011 28 C -0.154 4.154 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.192 0.808 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.164 0.836 38 H 0.189 0.811 39 H 0.193 0.807 40 H 0.173 0.827 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.182 -17.888 5.121 21.210 hybrid contribution 0.797 1.918 -0.616 2.166 sum -9.385 -15.971 4.504 19.064 Atomic orbital electron populations 1.69894 1.09026 1.29993 1.37448 1.26912 0.95619 1.05058 0.91649 0.85094 0.78984 0.75603 0.79356 1.18980 1.17424 1.19602 1.19881 0.95416 0.91099 1.45983 0.89940 1.18001 0.92392 0.93990 0.90089 1.21508 1.02014 0.93714 1.05744 1.21021 0.94982 0.97287 0.98796 1.22388 0.98377 0.98210 1.05216 1.19750 0.94498 0.95976 1.04259 1.18563 0.85153 0.81966 0.77980 1.90680 1.66191 1.34727 1.55821 1.48269 1.27060 1.06138 1.53283 1.22798 0.99362 0.80966 1.00459 1.22893 0.91409 0.96587 1.04078 1.21278 0.95845 0.92598 0.97460 0.87526 1.20050 0.94234 0.95240 0.94406 1.22212 1.02369 1.00439 0.93881 1.23097 0.89011 0.94396 1.00213 1.67694 1.14472 1.18459 1.22066 1.23160 1.01176 0.94232 0.88168 1.22321 0.93896 1.00327 1.02115 1.22344 0.85722 0.97535 0.95532 1.21757 0.97114 0.96329 1.00162 0.90666 0.87398 0.84085 0.80823 0.89309 0.89147 0.88711 0.86686 0.83551 0.81065 0.80739 0.82731 0.90981 0.92390 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.09 10.47 21.83 0.23 -47.86 16 2 C 0.02 1.07 5.34 85.25 0.46 1.53 16 3 Si 0.99 40.52 29.56 68.60 2.03 42.55 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.49 -27.32 9.08 23.47 0.21 -27.11 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.26 16 9 C 0.06 3.17 5.60 -21.32 -0.12 3.05 16 10 C -0.21 -9.79 9.78 22.77 0.22 -9.57 16 11 C -0.10 -3.99 10.01 22.18 0.22 -3.77 16 12 C -0.22 -8.60 8.62 22.70 0.20 -8.41 16 13 C -0.14 -6.81 5.87 -20.13 -0.12 -6.93 16 14 C 0.57 25.97 7.80 86.80 0.68 26.65 16 15 O -0.59 -32.28 16.59 -3.88 -0.06 -32.35 16 16 N -0.61 -19.64 3.33 -830.01 -2.76 -22.40 16 17 C 0.09 1.81 4.86 86.73 0.42 2.24 16 18 C -0.11 -1.48 6.36 31.78 0.20 -1.28 16 19 C -0.05 -0.87 3.28 -10.15 -0.03 -0.90 16 20 H 0.11 1.61 8.03 -2.39 -0.02 1.59 16 21 C -0.03 -0.48 5.01 -19.67 -0.10 -0.58 16 22 C -0.17 -2.58 8.41 22.36 0.19 -2.40 16 23 C 0.09 1.45 11.18 84.68 0.95 2.40 16 24 N -0.52 -9.95 10.36 -195.85 -2.03 -11.98 16 25 C 0.09 1.37 11.18 84.68 0.95 2.32 16 26 C -0.17 -2.35 9.78 22.36 0.22 -2.13 16 27 C 0.11 2.87 6.36 86.85 0.55 3.42 16 28 C -0.13 -7.56 8.24 23.01 0.19 -7.37 16 29 H 0.28 15.06 8.30 -92.71 -0.77 14.29 16 30 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 31 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.18 4.92 2.72 -8.61 -0.02 4.90 16 33 H 0.09 1.83 6.74 -2.39 -0.02 1.81 16 34 H 0.09 1.88 6.74 -2.39 -0.02 1.86 16 35 H 0.09 1.05 6.83 -2.39 -0.02 1.03 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.15 1.86 7.16 -2.91 -0.02 1.84 16 38 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.16 1.49 8.04 -2.91 -0.02 1.47 16 41 H 0.07 1.79 7.17 -2.39 -0.02 1.77 16 42 H 0.06 1.76 7.98 -2.39 -0.02 1.74 16 43 H 0.11 6.94 5.46 -2.91 -0.02 6.93 16 Total: -1.00 -76.58 351.80 3.71 -72.87 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 1.03 Total: 28.01 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 5.28 Total: -28.84 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -4.56 Total: -82.24 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.06 Total: -32.35 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -76.58 3.71 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556953649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.949 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds