Wall clock time and date at job start Tue Mar 31 2020 13:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48505 * 109.46865 * 269.99901 * 3 2 1 5 5 H 1.48499 * 109.46941 * 29.99550 * 3 2 1 6 6 H 1.48493 * 109.47370 * 149.99893 * 3 2 1 7 7 C 1.37877 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99519 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00243 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47042 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47447 * 55.00136 * 10 9 7 12 12 N 1.46504 * 109.47217 * 294.99938 * 10 9 7 13 13 C 1.31330 * 119.99758 * 113.31998 * 12 10 9 14 14 C 1.41696 * 119.72395 * 353.82635 * 13 12 10 15 15 C 1.35222 * 119.40715 * 179.97438 * 14 13 12 16 16 C 1.47103 * 119.12058 * 0.02562 * 15 14 13 17 17 C 1.37900 * 119.09074 * 359.97438 * 16 15 14 18 18 N 1.35068 * 120.33253 * 359.73536 * 17 16 15 19 19 H 0.96998 * 119.25496 * 180.25503 * 18 17 16 20 20 C 1.51137 * 109.68217 * 180.02562 * 17 16 15 21 21 C 1.53529 * 106.10903 * 359.97438 * 20 17 16 22 22 C 1.46484 * 129.81255 * 180.02562 * 16 15 14 23 23 O 1.21361 * 125.95202 * 359.97438 * 22 16 15 24 24 C 1.50705 * 109.47040 * 175.00457 * 10 9 7 25 25 C 1.38226 * 120.00351 * 79.72380 * 24 10 9 26 26 C 1.38240 * 120.00110 * 179.79164 * 25 24 10 27 27 C 1.38234 * 119.99892 * 0.43971 * 26 25 24 28 28 C 1.38242 * 120.00018 * 359.81307 * 27 26 25 29 29 C 1.38238 * 119.99381 * 259.99794 * 24 10 9 30 30 H 0.97001 * 120.00166 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46945 * 60.00000 * 9 7 2 32 32 H 1.08999 * 109.47612 * 300.00106 * 9 7 2 33 33 H 1.07996 * 120.29848 * 359.97438 * 14 13 12 34 34 H 1.08002 * 120.44048 * 179.97438 * 15 14 13 35 35 H 1.09005 * 110.12557 * 119.15462 * 20 17 16 36 36 H 1.08999 * 110.12624 * 240.83644 * 20 17 16 37 37 H 1.08999 * 110.33562 * 118.88263 * 21 20 17 38 38 H 1.09007 * 110.32975 * 241.01246 * 21 20 17 39 39 H 1.08006 * 120.00092 * 359.97438 * 25 24 10 40 40 H 1.08001 * 120.00075 * 180.27867 * 26 25 24 41 41 H 1.07998 * 120.00496 * 179.84033 * 27 26 25 42 42 H 1.07995 * 120.00144 * 180.02562 * 28 27 26 43 43 H 1.07994 * 120.00634 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0215 -2.6364 0.0010 11 1 3.5873 -3.1753 -0.8410 12 7 3.6335 -3.2917 1.2525 13 6 2.7687 -4.2799 1.2356 14 6 2.1160 -4.6217 0.0252 15 6 1.2270 -5.6406 0.0150 16 6 0.9594 -6.3697 1.2643 17 6 1.6224 -5.9956 2.4141 18 7 2.5090 -4.9769 2.3895 19 1 2.9693 -4.7293 3.2067 20 6 1.1906 -6.8799 3.5612 21 6 0.1645 -7.8623 2.9790 22 6 0.0564 -7.4948 1.5186 23 8 -0.6551 -8.0368 0.6984 24 6 5.5235 -2.6382 -0.1221 25 6 6.3084 -2.3916 0.9886 26 6 7.6862 -2.3974 0.8765 27 6 8.2790 -2.6409 -0.3483 28 6 7.4940 -2.8824 -1.4603 29 6 6.1162 -2.8808 -1.3473 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6799 0.8912 32 1 3.8752 -0.6803 -0.8888 33 1 2.3265 -4.0733 -0.8810 34 1 0.7197 -5.9150 -0.8981 35 1 2.0476 -7.4239 3.9586 36 1 0.7307 -6.2788 4.3456 37 1 0.5189 -8.8875 3.0854 38 1 -0.7988 -7.7418 3.4747 39 1 5.8453 -2.1972 1.9448 40 1 8.2995 -2.2092 1.7453 41 1 9.3554 -2.6429 -0.4366 42 1 7.9570 -3.0730 -2.4172 43 1 5.5030 -3.0695 -2.2159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564050742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:51 Heat of formation + Delta-G solvation = 48.509931 kcal Electronic energy + Delta-G solvation = -26115.807547 eV Core-core repulsion = 22512.418332 eV Total energy + Delta-G solvation = -3603.389214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78584 -39.11665 -38.51626 -36.29850 -34.62106 -32.98241 -32.48660 -31.20557 -30.54686 -29.19228 -27.67159 -26.39155 -24.87619 -22.85507 -22.17734 -21.72046 -21.62003 -20.61734 -19.20489 -17.59854 -17.10594 -16.48310 -16.19925 -16.09524 -15.85205 -15.10034 -14.73588 -14.43997 -14.32847 -14.09268 -14.02563 -13.56739 -13.51029 -13.07928 -12.98995 -12.91728 -12.65974 -12.47641 -12.34962 -11.81713 -11.54934 -11.41703 -11.38284 -10.94611 -10.73098 -10.61869 -10.37245 -9.98594 -9.77717 -9.60146 -9.54925 -9.15404 -8.63639 -8.57892 -8.49524 -8.27033 -6.94802 -6.03152 -4.00810 0.95843 1.57936 1.71509 1.75278 2.68038 2.77322 3.30864 3.38508 3.43904 3.88661 3.97971 4.15762 4.20667 4.46192 4.54982 4.72845 4.96262 4.99556 5.19530 5.21081 5.26077 5.29740 5.31368 5.33197 5.46413 5.49667 5.59116 5.62989 5.70895 5.89276 5.92388 6.03541 6.30311 6.35106 6.41494 6.54234 6.58016 6.67797 6.77646 6.82140 6.99645 7.07819 7.11139 7.33984 7.35026 7.45051 7.68741 7.77577 8.50733 8.53428 9.00799 9.58908 11.09644 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009125 B = 0.004557 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.603146 B = 6143.130763 C = 8241.409278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.001 3.999 10 C 0.139 3.861 11 H 0.059 0.941 12 N -0.563 5.563 13 C 0.396 3.604 14 C -0.194 4.194 15 C -0.011 4.011 16 C -0.314 4.314 17 C 0.220 3.780 18 N -0.571 5.571 19 H 0.415 0.585 20 C -0.081 4.081 21 C -0.167 4.167 22 C 0.418 3.582 23 O -0.466 6.466 24 C -0.058 4.058 25 C -0.092 4.092 26 C -0.129 4.129 27 C -0.135 4.135 28 C -0.126 4.126 29 C -0.120 4.120 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.018 0.982 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.129 -13.990 6.778 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.037 4.037 10 C 0.029 3.971 11 H 0.077 0.923 12 N -0.285 5.285 13 C 0.125 3.875 14 C -0.216 4.216 15 C -0.034 4.034 16 C -0.324 4.324 17 C 0.103 3.897 18 N -0.182 5.182 19 H 0.252 0.748 20 C -0.119 4.119 21 C -0.205 4.205 22 C 0.298 3.702 23 O -0.343 6.343 24 C -0.058 4.058 25 C -0.110 4.110 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.144 4.144 29 C -0.139 4.139 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.171 0.829 34 H 0.147 0.853 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.242 -13.466 6.792 17.689 hybrid contribution 0.156 1.209 -0.348 1.268 sum 9.397 -12.257 6.444 16.736 Atomic orbital electron populations 1.69909 1.06193 1.26727 1.51246 1.24948 0.94647 0.98901 0.94656 0.86866 0.80506 0.83968 0.78518 1.20314 1.21469 1.18998 1.21093 0.88984 0.94658 1.50605 0.90557 1.19662 0.97345 0.89767 0.96880 1.20485 0.88760 0.98124 0.89730 0.92297 1.71989 1.19132 1.08283 1.29066 1.18420 0.94466 0.90503 0.84093 1.21650 1.01344 1.00179 0.98453 1.21801 0.93782 0.92013 0.95837 1.21237 1.10100 1.06899 0.94201 1.21084 0.85883 0.85649 0.97042 1.40470 1.37537 1.27966 1.12227 0.74813 1.21063 1.00053 0.95746 0.95047 1.22302 1.01119 1.00890 0.96144 1.21653 0.78410 0.80758 0.89344 1.90557 1.36788 1.54073 1.52839 1.20105 0.95777 0.96798 0.93136 1.21072 0.92753 0.97991 0.99188 1.21132 0.95046 1.01249 0.97324 1.21016 0.99176 1.01848 0.93265 1.21008 0.93742 1.01338 0.98288 1.21059 0.94726 1.00798 0.97278 0.92840 0.95648 0.96384 0.82932 0.85320 0.87910 0.87748 0.87277 0.87133 0.85468 0.86727 0.86869 0.86618 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.52 -14.44 9.39 -34.44 -0.32 -14.76 16 8 H 0.08 2.26 6.25 -52.49 -0.33 1.93 16 9 C 0.00 0.03 3.70 -27.89 -0.10 -0.08 16 10 C 0.14 2.85 2.27 -69.08 -0.16 2.69 16 11 H 0.06 1.19 5.06 -51.93 -0.26 0.93 16 12 N -0.56 -11.01 9.21 -55.02 -0.51 -11.52 16 13 C 0.40 7.02 7.40 -156.59 -1.16 5.87 16 14 C -0.19 -3.48 7.86 -39.34 -0.31 -3.79 16 15 C -0.01 -0.17 10.34 -37.06 -0.38 -0.56 16 16 C -0.31 -4.45 6.30 -103.11 -0.65 -5.10 16 17 C 0.22 2.55 7.42 -81.08 -0.60 1.95 16 18 N -0.57 -7.67 5.29 -7.95 -0.04 -7.72 16 19 H 0.42 4.54 8.89 -40.82 -0.36 4.18 16 20 C -0.08 -0.53 6.82 -27.39 -0.19 -0.71 16 21 C -0.17 -1.23 6.89 -27.47 -0.19 -1.42 16 22 C 0.42 5.42 7.74 -30.85 -0.24 5.18 16 23 O -0.47 -7.69 18.03 5.49 0.10 -7.59 16 24 C -0.06 -1.04 4.95 -104.62 -0.52 -1.56 16 25 C -0.09 -1.56 9.32 -39.58 -0.37 -1.93 16 26 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 27 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 28 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 29 C -0.12 -1.94 9.67 -39.58 -0.38 -2.32 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 32 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 33 H 0.15 2.87 5.62 -52.49 -0.29 2.58 16 34 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.13 2.21 7.73 -52.48 -0.41 1.80 16 40 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.77 8.04 -52.49 -0.42 1.34 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -35.60 359.86 -11.18 -46.77 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.39 Total: 5.50 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -6.86 Total: -21.25 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.22 Total: -46.27 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.10 Total: -7.59 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.60 -11.18 -46.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564050742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.285 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds