Wall clock time and date at job start Tue Mar 31 2020 13:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48505 * 109.46865 * 269.99901 * 3 2 1 5 5 H 1.48499 * 109.46941 * 29.99550 * 3 2 1 6 6 H 1.48493 * 109.47370 * 149.99893 * 3 2 1 7 7 C 1.37877 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99519 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00243 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47042 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47447 * 55.00136 * 10 9 7 12 12 N 1.46504 * 109.47217 * 294.99938 * 10 9 7 13 13 C 1.31330 * 119.99758 * 113.31998 * 12 10 9 14 14 C 1.41696 * 119.72395 * 353.82635 * 13 12 10 15 15 C 1.35222 * 119.40715 * 179.97438 * 14 13 12 16 16 C 1.47103 * 119.12058 * 0.02562 * 15 14 13 17 17 C 1.37900 * 119.09074 * 359.97438 * 16 15 14 18 18 N 1.35068 * 120.33253 * 359.73536 * 17 16 15 19 19 H 0.96998 * 119.25496 * 180.25503 * 18 17 16 20 20 C 1.51137 * 109.68217 * 180.02562 * 17 16 15 21 21 C 1.53529 * 106.10903 * 359.97438 * 20 17 16 22 22 C 1.46484 * 129.81255 * 180.02562 * 16 15 14 23 23 O 1.21361 * 125.95202 * 359.97438 * 22 16 15 24 24 C 1.50705 * 109.47040 * 175.00457 * 10 9 7 25 25 C 1.38226 * 120.00351 * 79.72380 * 24 10 9 26 26 C 1.38240 * 120.00110 * 179.79164 * 25 24 10 27 27 C 1.38234 * 119.99892 * 0.43971 * 26 25 24 28 28 C 1.38242 * 120.00018 * 359.81307 * 27 26 25 29 29 C 1.38238 * 119.99381 * 259.99794 * 24 10 9 30 30 H 0.97001 * 120.00166 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46945 * 60.00000 * 9 7 2 32 32 H 1.08999 * 109.47612 * 300.00106 * 9 7 2 33 33 H 1.07996 * 120.29848 * 359.97438 * 14 13 12 34 34 H 1.08002 * 120.44048 * 179.97438 * 15 14 13 35 35 H 1.09005 * 110.12557 * 119.15462 * 20 17 16 36 36 H 1.08999 * 110.12624 * 240.83644 * 20 17 16 37 37 H 1.08999 * 110.33562 * 118.88263 * 21 20 17 38 38 H 1.09007 * 110.32975 * 241.01246 * 21 20 17 39 39 H 1.08006 * 120.00092 * 359.97438 * 25 24 10 40 40 H 1.08001 * 120.00075 * 180.27867 * 26 25 24 41 41 H 1.07998 * 120.00496 * 179.84033 * 27 26 25 42 42 H 1.07995 * 120.00144 * 180.02562 * 28 27 26 43 43 H 1.07994 * 120.00634 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0215 -2.6364 0.0010 11 1 3.5873 -3.1753 -0.8410 12 7 3.6335 -3.2917 1.2525 13 6 2.7687 -4.2799 1.2356 14 6 2.1160 -4.6217 0.0252 15 6 1.2270 -5.6406 0.0150 16 6 0.9594 -6.3697 1.2643 17 6 1.6224 -5.9956 2.4141 18 7 2.5090 -4.9769 2.3895 19 1 2.9693 -4.7293 3.2067 20 6 1.1906 -6.8799 3.5612 21 6 0.1645 -7.8623 2.9790 22 6 0.0564 -7.4948 1.5186 23 8 -0.6551 -8.0368 0.6984 24 6 5.5235 -2.6382 -0.1221 25 6 6.3084 -2.3916 0.9886 26 6 7.6862 -2.3974 0.8765 27 6 8.2790 -2.6409 -0.3483 28 6 7.4940 -2.8824 -1.4603 29 6 6.1162 -2.8808 -1.3473 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6799 0.8912 32 1 3.8752 -0.6803 -0.8888 33 1 2.3265 -4.0733 -0.8810 34 1 0.7197 -5.9150 -0.8981 35 1 2.0476 -7.4239 3.9586 36 1 0.7307 -6.2788 4.3456 37 1 0.5189 -8.8875 3.0854 38 1 -0.7988 -7.7418 3.4747 39 1 5.8453 -2.1972 1.9448 40 1 8.2995 -2.2092 1.7453 41 1 9.3554 -2.6429 -0.4366 42 1 7.9570 -3.0730 -2.4172 43 1 5.5030 -3.0695 -2.2159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564050742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:50 Heat of formation + Delta-G solvation = 25.981903 kcal Electronic energy + Delta-G solvation = -26116.784435 eV Core-core repulsion = 22512.418332 eV Total energy + Delta-G solvation = -3604.366103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90338 -40.33445 -39.65022 -37.54904 -35.87963 -34.54973 -34.22658 -32.47504 -31.70831 -30.90949 -28.80080 -27.43172 -26.35527 -24.13531 -23.51096 -23.29681 -22.78889 -21.62849 -20.60178 -19.07602 -18.64860 -17.84115 -17.37731 -17.23481 -16.86376 -16.42704 -16.26336 -15.94355 -15.59200 -15.37282 -15.26729 -14.77176 -14.58742 -14.38501 -14.33747 -14.18085 -14.12772 -13.86935 -13.41659 -13.22372 -13.09858 -12.62959 -12.51913 -12.42010 -12.27281 -11.95542 -11.86080 -11.75384 -11.36807 -11.18325 -10.82178 -10.80319 -10.61614 -10.07428 -9.75256 -9.53298 -8.31404 -8.25494 -6.31385 -0.07232 0.25152 0.52207 0.57841 1.28459 1.30015 1.42392 1.55177 1.64248 2.32248 2.62135 2.96685 3.04704 3.09156 3.44183 3.62357 3.81917 3.89138 3.98913 4.12062 4.16946 4.21245 4.28506 4.29639 4.36945 4.47458 4.50100 4.69569 4.79242 4.86826 4.87531 4.99944 5.01931 5.05308 5.15158 5.22451 5.23931 5.26983 5.30472 5.40030 5.57302 5.64999 5.68646 5.82838 5.93227 6.14786 6.19871 6.28011 6.70585 6.74523 7.11890 7.31404 8.86131 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009125 B = 0.004557 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.603146 B = 6143.130763 C = 8241.409278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.513 4.513 8 H 0.046 0.954 9 C 0.010 3.990 10 C 0.147 3.853 11 H 0.045 0.955 12 N -0.588 5.588 13 C 0.396 3.604 14 C -0.237 4.237 15 C -0.002 4.002 16 C -0.363 4.363 17 C 0.249 3.751 18 N -0.561 5.561 19 H 0.431 0.569 20 C -0.071 4.071 21 C -0.151 4.151 22 C 0.413 3.587 23 O -0.515 6.515 24 C -0.083 4.083 25 C -0.108 4.108 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.123 4.123 29 C -0.137 4.137 30 H 0.264 0.736 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.760 -15.112 9.454 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.551 4.551 8 H 0.064 0.936 9 C -0.028 4.028 10 C 0.036 3.964 11 H 0.063 0.937 12 N -0.312 5.312 13 C 0.126 3.874 14 C -0.259 4.259 15 C -0.026 4.026 16 C -0.373 4.373 17 C 0.131 3.869 18 N -0.172 5.172 19 H 0.270 0.730 20 C -0.108 4.108 21 C -0.189 4.189 22 C 0.297 3.703 23 O -0.396 6.396 24 C -0.084 4.084 25 C -0.126 4.126 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.140 4.140 29 C -0.155 4.155 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.896 -14.601 9.498 21.093 hybrid contribution -0.702 1.384 -1.191 1.956 sum 11.194 -13.217 8.307 19.209 Atomic orbital electron populations 1.70055 1.07922 1.27725 1.53205 1.25822 0.95461 1.02789 0.94622 0.85820 0.79366 0.79380 0.79067 1.19250 1.20836 1.18088 1.21370 0.91093 0.93547 1.49136 0.93572 1.19507 0.94657 0.92812 0.95824 1.20199 0.90721 0.95428 0.90060 0.93727 1.72007 1.20935 1.09994 1.28252 1.18575 0.93322 0.90228 0.85281 1.21443 1.04069 1.02008 0.98430 1.22044 0.92042 0.91149 0.97378 1.21596 1.12764 1.08819 0.94078 1.21963 0.82726 0.83808 0.98401 1.40464 1.37608 1.27676 1.11469 0.72970 1.21421 1.01399 0.94857 0.93107 1.22383 1.02752 1.02700 0.91019 1.22387 0.76666 0.79413 0.91866 1.90536 1.38662 1.55448 1.54948 1.20002 0.94310 0.99417 0.94644 1.21070 0.94124 0.99173 0.98255 1.21452 0.93971 1.00085 0.99006 1.21474 1.01052 0.99665 0.92313 1.21375 0.92631 0.99962 1.00080 1.21218 0.96215 1.01494 0.96601 0.92738 0.96816 0.96717 0.85472 0.85835 0.83488 0.84538 0.84080 0.84851 0.86741 0.83906 0.83114 0.83611 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.94 46.72 27.47 68.60 1.88 48.60 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 7 C -0.51 -30.44 9.39 25.60 0.24 -30.20 16 8 H 0.05 2.96 6.25 -2.91 -0.02 2.94 16 9 C 0.01 0.50 3.70 29.85 0.11 0.61 16 10 C 0.15 6.41 2.27 44.25 0.10 6.52 16 11 H 0.04 2.02 5.06 -2.39 -0.01 2.01 16 12 N -0.59 -24.33 9.21 -327.99 -3.02 -27.35 16 13 C 0.40 14.86 7.40 134.59 1.00 15.85 16 14 C -0.24 -9.41 7.86 22.43 0.18 -9.24 16 15 C 0.00 -0.08 10.34 23.90 0.25 0.16 16 16 C -0.36 -10.38 6.30 -18.88 -0.12 -10.50 16 17 C 0.25 5.27 7.42 42.12 0.31 5.58 16 18 N -0.56 -14.73 5.29 -179.07 -0.95 -15.68 16 19 H 0.43 8.70 8.89 -92.71 -0.82 7.88 16 20 C -0.07 -0.54 6.82 30.16 0.21 -0.33 16 21 C -0.15 -1.56 6.89 30.11 0.21 -1.35 16 22 C 0.41 10.36 7.74 27.92 0.22 10.57 16 23 O -0.52 -17.40 18.03 -3.28 -0.06 -17.46 16 24 C -0.08 -3.11 4.95 -19.87 -0.10 -3.21 16 25 C -0.11 -3.66 9.32 22.27 0.21 -3.45 16 26 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 27 C -0.13 -2.99 10.05 22.27 0.22 -2.76 16 28 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 29 C -0.14 -4.46 9.67 22.27 0.22 -4.24 16 30 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.01 0.72 7.20 -2.38 -0.02 0.70 16 32 H 0.01 0.74 7.57 -2.39 -0.02 0.72 16 33 H 0.13 5.56 5.62 -2.91 -0.02 5.54 16 34 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.15 0.09 8.14 -2.38 -0.02 0.07 16 36 H 0.14 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.11 4.07 7.73 -2.91 -0.02 4.05 16 40 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 41 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.12 3.70 8.04 -2.91 -0.02 3.68 16 Total: -1.00 -85.62 359.86 2.48 -83.14 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.17 Total: 20.42 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.15 Total: -31.04 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -3.67 Total: -103.66 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.06 Total: -17.46 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.88 Total: 48.60 kcal Total: -85.62 2.48 -83.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564050742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.126 kcal (2) G-P(sol) polarization free energy of solvation -85.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds