Wall clock time and date at job start Tue Mar 31 2020 13:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99997 * 2 1 4 4 H 1.48498 * 109.47016 * 270.00290 * 3 2 1 5 5 H 1.48498 * 109.46996 * 30.00046 * 3 2 1 6 6 H 1.48496 * 109.46992 * 150.00075 * 3 2 1 7 7 C 1.37874 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99706 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00155 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47002 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47227 * 305.00128 * 10 9 7 12 12 N 1.46499 * 109.47608 * 65.00020 * 10 9 7 13 13 C 1.31332 * 120.00192 * 246.67806 * 12 10 9 14 14 C 1.41700 * 119.72291 * 6.18016 * 13 12 10 15 15 C 1.35218 * 119.40991 * 180.27710 * 14 13 12 16 16 C 1.47100 * 119.11895 * 359.51478 * 15 14 13 17 17 C 1.37903 * 119.09214 * 0.47972 * 16 15 14 18 18 N 1.35064 * 120.33056 * 359.76847 * 17 16 15 19 19 H 0.96992 * 119.25397 * 180.02562 * 18 17 16 20 20 C 1.51141 * 109.68370 * 179.76586 * 17 16 15 21 21 C 1.53528 * 106.10928 * 0.02562 * 20 17 16 22 22 C 1.46492 * 129.81212 * 180.19369 * 16 15 14 23 23 O 1.21356 * 125.95164 * 0.30943 * 22 16 15 24 24 C 1.50705 * 109.47162 * 185.00194 * 10 9 7 25 25 C 1.38240 * 119.99610 * 279.72717 * 24 10 9 26 26 C 1.38234 * 119.99818 * 179.81115 * 25 24 10 27 27 C 1.38237 * 119.99947 * 0.38768 * 26 25 24 28 28 C 1.38237 * 119.99858 * 359.86689 * 27 26 25 29 29 C 1.38228 * 120.00200 * 99.99785 * 24 10 9 30 30 H 0.97000 * 119.99785 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.46880 * 60.00151 * 9 7 2 32 32 H 1.08998 * 109.47024 * 300.00176 * 9 7 2 33 33 H 1.08005 * 120.29872 * 359.97438 * 14 13 12 34 34 H 1.08001 * 120.43987 * 179.72245 * 15 14 13 35 35 H 1.09004 * 110.12349 * 119.16098 * 20 17 16 36 36 H 1.08996 * 110.12344 * 240.84225 * 20 17 16 37 37 H 1.09000 * 110.33137 * 118.87878 * 21 20 17 38 38 H 1.08999 * 110.33426 * 241.01489 * 21 20 17 39 39 H 1.08002 * 119.99802 * 359.97438 * 25 24 10 40 40 H 1.08003 * 120.00116 * 180.23080 * 26 25 24 41 41 H 1.07995 * 119.99825 * 179.83339 * 27 26 25 42 42 H 1.08004 * 119.99547 * 179.97438 * 28 27 26 43 43 H 1.07996 * 119.99910 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 1 3.5872 -3.1761 0.8393 12 7 3.6335 -3.2907 -1.2543 13 6 2.7687 -4.2789 -1.2383 14 6 2.1159 -4.6217 -0.0283 15 6 1.2308 -5.6439 -0.0178 16 6 0.9598 -6.3689 -1.2687 17 6 1.6228 -5.9939 -2.4182 18 7 2.5050 -4.9715 -2.3940 19 1 2.9623 -4.7206 -3.2118 20 6 1.1911 -6.8773 -3.5661 21 6 0.1649 -7.8602 -2.9847 22 6 0.0565 -7.4936 -1.5240 23 8 -0.6559 -8.0356 -0.7046 24 6 5.5235 -2.6384 0.1210 25 6 6.3086 -2.4020 -0.9920 26 6 7.6863 -2.3998 -0.8781 27 6 8.2790 -2.6420 0.3470 28 6 7.4939 -2.8836 1.4589 29 6 6.1162 -2.8820 1.3458 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6804 0.8888 32 1 3.8745 -0.6799 -0.8911 33 1 2.3269 -4.0745 0.8787 34 1 0.7271 -5.9222 0.8961 35 1 0.7311 -6.2754 -4.3500 36 1 2.0480 -7.4208 -3.9639 37 1 -0.7988 -7.7380 -3.4790 38 1 0.5186 -8.8854 -3.0937 39 1 5.8456 -2.2163 -1.9499 40 1 8.2996 -2.2115 -1.7469 41 1 9.3553 -2.6431 0.4354 42 1 7.9570 -3.0733 2.4160 43 1 5.5029 -3.0706 2.2145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564050744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:53 Heat of formation + Delta-G solvation = 26.017006 kcal Electronic energy + Delta-G solvation = -26116.909459 eV Core-core repulsion = 22512.544878 eV Total energy + Delta-G solvation = -3604.364581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90327 -40.33450 -39.65056 -37.54938 -35.87959 -34.55012 -34.22708 -32.47370 -31.70811 -30.91138 -28.80056 -27.43170 -26.35543 -24.13594 -23.50832 -23.29879 -22.78871 -21.62846 -20.60085 -19.07400 -18.64988 -17.84223 -17.37948 -17.23390 -16.86380 -16.42963 -16.26381 -15.94343 -15.59047 -15.37086 -15.26821 -14.76642 -14.58914 -14.41822 -14.31325 -14.17657 -14.08525 -13.91521 -13.46301 -13.21475 -13.08420 -12.56880 -12.51085 -12.42645 -12.27989 -11.98327 -11.86936 -11.74604 -11.36987 -11.18468 -10.82367 -10.80030 -10.61586 -10.07583 -9.75291 -9.53315 -8.31534 -8.25270 -6.31381 -0.07213 0.25139 0.52249 0.57859 1.28597 1.30096 1.42109 1.55033 1.64186 2.32135 2.62131 2.96722 3.04707 3.09145 3.44166 3.62305 3.81823 3.89157 3.98978 4.12063 4.16936 4.21244 4.28545 4.29633 4.37019 4.47340 4.50043 4.69608 4.79185 4.86915 4.87522 5.00391 5.02327 5.05321 5.15215 5.22541 5.23991 5.25879 5.31070 5.39813 5.57229 5.65007 5.68560 5.82833 5.93176 6.14828 6.19927 6.28013 6.70587 6.74511 7.11765 7.31409 8.86148 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009122 B = 0.004558 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.602799 B = 6141.625727 C = 8240.459143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.513 4.513 8 H 0.046 0.954 9 C 0.010 3.990 10 C 0.147 3.853 11 H 0.045 0.955 12 N -0.588 5.588 13 C 0.396 3.604 14 C -0.237 4.237 15 C -0.002 4.002 16 C -0.363 4.363 17 C 0.249 3.751 18 N -0.561 5.561 19 H 0.431 0.569 20 C -0.071 4.071 21 C -0.151 4.151 22 C 0.413 3.587 23 O -0.515 6.515 24 C -0.083 4.083 25 C -0.108 4.108 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.123 4.123 29 C -0.137 4.137 30 H 0.264 0.736 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 -15.114 -9.479 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.551 4.551 8 H 0.064 0.936 9 C -0.028 4.028 10 C 0.036 3.964 11 H 0.063 0.937 12 N -0.312 5.312 13 C 0.126 3.874 14 C -0.259 4.259 15 C -0.026 4.026 16 C -0.373 4.373 17 C 0.131 3.869 18 N -0.172 5.172 19 H 0.270 0.730 20 C -0.108 4.108 21 C -0.189 4.189 22 C 0.297 3.703 23 O -0.396 6.396 24 C -0.084 4.084 25 C -0.126 4.126 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.141 4.141 29 C -0.156 4.156 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.134 0.866 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.905 -14.601 -9.518 21.107 hybrid contribution -0.699 1.378 1.167 1.936 sum 11.206 -13.223 -8.352 19.240 Atomic orbital electron populations 1.70056 1.07923 1.27721 1.53207 1.25823 0.95462 1.02786 0.94625 0.85813 0.79452 0.79398 0.78918 1.19602 1.20778 1.17853 1.21373 0.91092 0.93547 1.49129 0.93569 1.19506 0.94654 0.92802 0.95815 1.20199 0.90721 0.95432 0.90051 0.93744 1.72005 1.20932 1.10000 1.28236 1.18577 0.93298 0.90271 0.85263 1.21444 1.04140 1.01925 0.98440 1.22042 0.92051 0.91143 0.97382 1.21598 1.12691 1.08910 0.94064 1.21963 0.82735 0.83777 0.98424 1.40456 1.37890 1.27554 1.11316 0.72970 1.21421 1.01399 0.94870 0.93092 1.22384 1.02738 1.02713 0.91017 1.22390 0.76692 0.79388 0.91865 1.90535 1.38642 1.55411 1.55003 1.20006 0.94316 0.99421 0.94637 1.21078 0.94107 0.99197 0.98241 1.21456 0.93992 1.00056 0.98998 1.21474 1.01048 0.99668 0.92333 1.21372 0.92632 0.99983 1.00082 1.21213 0.96217 1.01494 0.96639 0.92738 0.96553 0.96986 0.85477 0.85832 0.84544 0.83485 0.84878 0.84058 0.86630 0.83871 0.83119 0.83637 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.94 46.74 27.47 68.60 1.88 48.63 16 4 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.25 -12.10 6.54 99.48 0.65 -11.45 16 7 C -0.51 -30.44 9.39 25.60 0.24 -30.19 16 8 H 0.05 2.96 6.25 -2.91 -0.02 2.94 16 9 C 0.01 0.51 3.70 29.85 0.11 0.62 16 10 C 0.15 6.41 2.28 44.25 0.10 6.51 16 11 H 0.04 2.02 5.06 -2.39 -0.01 2.01 16 12 N -0.59 -24.28 9.19 -328.00 -3.01 -27.29 16 13 C 0.40 14.84 7.40 134.59 1.00 15.84 16 14 C -0.24 -9.41 7.86 22.43 0.18 -9.23 16 15 C 0.00 -0.09 10.34 23.90 0.25 0.16 16 16 C -0.36 -10.38 6.31 -18.88 -0.12 -10.50 16 17 C 0.25 5.27 7.42 42.12 0.31 5.58 16 18 N -0.56 -14.72 5.29 -179.06 -0.95 -15.67 16 19 H 0.43 8.69 8.89 -92.71 -0.82 7.87 16 20 C -0.07 -0.54 6.82 30.17 0.21 -0.33 16 21 C -0.15 -1.56 6.89 30.12 0.21 -1.35 16 22 C 0.41 10.36 7.74 27.93 0.22 10.57 16 23 O -0.52 -17.40 18.03 -3.26 -0.06 -17.46 16 24 C -0.08 -3.12 4.96 -19.86 -0.10 -3.21 16 25 C -0.11 -3.64 9.33 22.27 0.21 -3.44 16 26 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 27 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 28 C -0.12 -3.18 10.05 22.27 0.22 -2.96 16 29 C -0.14 -4.48 9.67 22.27 0.22 -4.27 16 30 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 32 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 33 H 0.13 5.56 5.62 -2.91 -0.02 5.54 16 34 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.15 0.08 8.14 -2.39 -0.02 0.07 16 37 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.12 4.07 7.71 -2.91 -0.02 4.05 16 40 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 42 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.12 3.71 8.04 -2.91 -0.02 3.68 16 Total: -1.00 -85.58 359.83 2.49 -83.10 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.17 Total: 20.39 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 4.15 Total: -31.06 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -3.66 Total: -103.60 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.06 Total: -17.46 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.63 kcal Total: -85.58 2.49 -83.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564050744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.112 kcal (2) G-P(sol) polarization free energy of solvation -85.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds