Wall clock time and date at job start Tue Mar 31 2020 13:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99821 * 2 1 4 4 H 1.48503 * 109.47208 * 270.00092 * 3 2 1 5 5 H 1.48497 * 109.46955 * 29.99733 * 3 2 1 6 6 H 1.48493 * 109.47210 * 150.00196 * 3 2 1 7 7 C 1.37878 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99663 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00017 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47160 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46962 * 304.99729 * 11 10 9 13 13 N 1.46901 * 109.47072 * 64.99741 * 11 10 9 14 14 C 1.50703 * 109.47145 * 184.99861 * 11 10 9 15 15 O 1.21278 * 119.99985 * 260.00362 * 14 11 10 16 16 N 1.34779 * 119.99944 * 80.00073 * 14 11 10 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 11 18 18 C 1.50701 * 109.46992 * 179.97438 * 17 16 14 19 19 C 1.32915 * 125.20579 * 90.00074 * 18 17 16 20 20 C 1.39209 * 115.70086 * 179.97438 * 19 18 17 21 21 C 1.34629 * 113.66823 * 0.02562 * 20 19 18 22 22 S 1.75724 * 125.20914 * 269.69747 * 18 17 16 23 23 C 1.51403 * 124.78639 * 179.97438 * 21 20 19 24 24 C 1.53162 * 108.70325 * 343.68357 * 23 21 20 25 25 C 1.53154 * 108.96391 * 49.66581 * 24 23 21 26 26 C 1.52279 * 123.50203 * 179.97438 * 20 19 18 27 27 H 0.96997 * 120.00033 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47518 * 60.00149 * 9 7 2 29 29 H 1.09005 * 109.47148 * 299.99783 * 9 7 2 30 30 H 1.08994 * 109.47368 * 59.99778 * 10 9 7 31 31 H 1.09003 * 109.47245 * 300.00026 * 10 9 7 32 32 H 1.00900 * 111.00279 * 296.04267 * 13 11 10 33 33 H 1.00898 * 110.99889 * 60.00434 * 13 11 10 34 34 H 0.97000 * 119.99708 * 359.97438 * 16 14 11 35 35 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 36 36 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 37 37 H 1.07998 * 122.14884 * 359.97425 * 19 18 17 38 38 H 1.09008 * 109.59805 * 223.91740 * 23 21 20 39 39 H 1.09003 * 109.60013 * 103.44946 * 23 21 20 40 40 H 1.09002 * 109.55645 * 289.81837 * 24 23 21 41 41 H 1.09005 * 109.55919 * 169.50653 * 24 23 21 42 42 H 1.09000 * 109.50122 * 169.49518 * 25 24 23 43 43 H 1.08998 * 109.50062 * 49.38649 * 25 24 23 44 44 H 1.08997 * 109.58646 * 282.34467 * 26 20 19 45 45 H 1.08996 * 109.58211 * 42.76133 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6364 0.0001 12 1 5.9149 -2.0470 -0.8417 13 7 6.0412 -2.0509 1.2553 14 6 6.0540 -4.0518 -0.1235 15 8 6.4280 -4.6508 0.8624 16 7 6.0876 -4.6520 -1.3299 17 6 6.5755 -6.0281 -1.4500 18 6 6.5099 -6.4602 -2.8923 19 6 7.4851 -6.3087 -3.7827 20 6 7.2121 -6.7814 -5.0632 21 6 5.9856 -7.3220 -5.1898 22 16 5.1355 -7.2482 -3.6523 23 6 5.4287 -7.9105 -6.4688 24 6 6.2866 -7.4319 -7.6439 25 6 7.7625 -7.6730 -7.3133 26 6 8.2007 -6.6982 -6.2184 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6795 0.8894 29 1 3.8745 -0.6807 -0.8906 30 1 3.6580 -3.1505 -0.8896 31 1 3.6586 -3.1501 0.8903 32 1 5.7718 -1.0815 1.3315 33 1 5.7177 -2.5798 2.0514 34 1 5.7881 -4.1730 -2.1184 35 1 5.9541 -6.6881 -0.8447 36 1 7.6070 -6.0796 -1.1014 37 1 8.4285 -5.8484 -3.5290 38 1 4.4002 -7.5770 -6.6072 39 1 5.4584 -8.9987 -6.4138 40 1 6.1187 -6.3676 -7.8086 41 1 6.0184 -7.9884 -8.5420 42 1 8.3664 -7.5122 -8.2064 43 1 7.8945 -8.6969 -6.9636 44 1 8.2135 -5.6834 -6.6160 45 1 9.1967 -6.9676 -5.8670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567660300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:29 Heat of formation + Delta-G solvation = -57.809320 kcal Electronic energy + Delta-G solvation = -23992.505001 eV Core-core repulsion = 20519.949389 eV Total energy + Delta-G solvation = -3472.555612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01263 -40.09610 -37.41411 -36.83672 -35.17265 -34.81784 -32.09087 -31.71545 -31.10465 -28.60457 -27.07216 -25.11460 -24.57916 -23.21599 -22.22556 -21.52469 -21.17148 -19.24511 -18.89752 -18.47498 -18.12002 -17.22424 -16.34445 -16.27807 -16.08589 -15.90177 -15.59394 -15.56144 -14.97603 -14.71285 -14.67602 -14.60193 -14.42086 -14.16877 -13.85367 -13.61179 -13.52931 -13.27919 -13.06662 -12.93526 -12.70447 -12.37969 -12.12039 -11.94838 -11.86332 -11.71681 -11.70051 -11.48976 -11.42090 -11.21600 -10.88178 -10.78014 -10.21182 -9.69411 -9.48652 -9.25736 -8.30578 -6.36334 -0.09604 0.58647 1.03250 1.37709 1.40030 1.51220 1.56114 1.59619 2.26436 2.35826 3.04968 3.47761 3.71116 3.74788 3.76851 3.99420 4.03156 4.06748 4.14218 4.17837 4.27633 4.33596 4.51323 4.53241 4.58433 4.63803 4.71656 4.76933 4.89841 4.90970 4.93051 5.04158 5.10884 5.20405 5.26185 5.29295 5.35019 5.44378 5.45335 5.47495 5.61781 5.64165 6.04145 6.24292 6.45109 6.48521 6.72197 7.15626 7.28502 8.86327 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002632 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.828142 B =10636.470571 C =11627.003354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.535 4.535 8 H 0.025 0.975 9 C -0.006 4.006 10 C -0.119 4.119 11 C 0.082 3.918 12 H 0.120 0.880 13 N -0.829 5.829 14 C 0.527 3.473 15 O -0.570 6.570 16 N -0.717 5.717 17 C 0.200 3.800 18 C -0.213 4.213 19 C -0.101 4.101 20 C -0.118 4.118 21 C -0.174 4.174 22 S 0.083 5.917 23 C -0.053 4.053 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.056 4.056 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.355 0.645 33 H 0.345 0.655 34 H 0.412 0.588 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.153 0.847 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.275 -15.115 -16.950 29.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.573 4.573 8 H 0.043 0.957 9 C -0.043 4.043 10 C -0.159 4.159 11 C -0.033 4.033 12 H 0.138 0.862 13 N -0.361 5.361 14 C 0.314 3.686 15 O -0.448 6.448 16 N -0.370 5.370 17 C 0.075 3.925 18 C -0.330 4.330 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.292 4.292 22 S 0.351 5.649 23 C -0.092 4.092 24 C -0.152 4.152 25 C -0.156 4.156 26 C -0.095 4.095 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.170 0.830 33 H 0.158 0.842 34 H 0.248 0.752 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.170 0.830 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.674 -16.081 -15.958 29.359 hybrid contribution -0.504 1.337 -0.134 1.436 sum 18.170 -14.744 -16.092 28.399 Atomic orbital electron populations 1.70084 1.08576 1.28261 1.52478 1.26102 0.95640 1.03847 0.93935 0.85589 0.79704 0.77595 0.79338 1.18978 1.21538 1.16010 1.21438 0.92228 0.92892 1.50772 0.95667 1.19501 0.93793 0.93731 0.97293 1.22025 0.93539 0.98824 1.01494 1.21430 0.93230 0.92228 0.96454 0.86184 1.58752 1.66438 1.07671 1.03244 1.20780 0.76527 0.88647 0.82669 1.90635 1.49136 1.66806 1.38236 1.46027 1.66239 1.14994 1.09745 1.19517 1.00777 0.82390 0.89783 1.23986 0.98871 1.10752 0.99436 1.20233 1.00304 1.00722 0.91996 1.19892 0.95462 1.01653 0.95940 1.25212 0.97944 1.07236 0.98817 1.84542 1.18350 1.59061 1.02914 1.20452 0.99466 1.00424 0.88829 1.21594 0.94797 1.01878 0.96959 1.21566 0.96143 0.99280 0.98632 1.20625 0.96354 1.00784 0.91775 0.92507 0.95492 0.95140 0.91995 0.93938 0.82962 0.84160 0.75197 0.91739 0.89308 0.82985 0.90332 0.89421 0.91809 0.89517 0.89732 0.91802 0.90008 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.00 0.08 5.47 84.65 0.46 0.54 16 3 Si 0.96 42.66 27.47 68.60 1.88 44.55 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 7 C -0.54 -30.28 9.66 25.60 0.25 -30.03 16 8 H 0.02 1.60 7.99 -2.91 -0.02 1.57 16 9 C -0.01 -0.25 3.81 29.85 0.11 -0.13 16 10 C -0.12 -4.43 4.78 30.59 0.15 -4.28 16 11 C 0.08 2.50 3.21 44.17 0.14 2.64 16 12 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 13 N -0.83 -25.41 8.94 -171.80 -1.54 -26.95 16 14 C 0.53 16.42 7.08 87.66 0.62 17.04 16 15 O -0.57 -21.49 16.25 -3.02 -0.05 -21.53 16 16 N -0.72 -17.81 5.55 -466.78 -2.59 -20.40 16 17 C 0.20 4.58 6.16 85.63 0.53 5.11 16 18 C -0.21 -4.32 5.86 24.51 0.14 -4.17 16 19 C -0.10 -1.76 9.86 21.33 0.21 -1.55 16 20 C -0.12 -1.93 5.78 -19.95 -0.12 -2.05 16 21 C -0.17 -3.05 6.35 25.08 0.16 -2.89 16 22 S 0.08 1.72 23.30 -56.49 -1.32 0.41 16 23 C -0.05 -0.68 6.26 30.13 0.19 -0.49 16 24 C -0.11 -1.09 5.94 30.70 0.18 -0.91 16 25 C -0.12 -1.05 5.89 30.65 0.18 -0.87 16 26 C -0.06 -0.62 6.15 30.36 0.19 -0.43 16 27 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.03 1.12 5.92 -2.39 -0.01 1.11 16 29 H 0.03 1.24 7.57 -2.38 -0.02 1.22 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.36 10.25 7.55 -89.69 -0.68 9.58 16 33 H 0.35 11.11 8.58 -89.70 -0.77 10.34 16 34 H 0.41 8.89 8.46 -92.71 -0.78 8.11 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 41 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.06 0.60 8.10 -2.39 -0.02 0.58 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -70.87 376.68 -1.18 -72.05 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -1.27 Total: 33.71 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 3.40 Total: -22.49 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.83 Total: -106.69 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.55 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.41 kcal Total: -70.87 -1.18 -72.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567660300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.243 kcal (2) G-P(sol) polarization free energy of solvation -70.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds