Wall clock time and date at job start Tue Mar 31 2020 13:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00090 * 2 1 4 4 H 1.48496 * 109.46878 * 270.00083 * 3 2 1 5 5 H 1.48499 * 109.46773 * 30.00074 * 3 2 1 6 6 H 1.48494 * 109.46844 * 149.99959 * 3 2 1 7 7 C 1.37875 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00053 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46967 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47239 * 55.00447 * 11 10 9 13 13 N 1.46893 * 109.47298 * 294.99793 * 11 10 9 14 14 C 1.50703 * 109.46906 * 175.00176 * 11 10 9 15 15 O 1.21283 * 120.00093 * 100.00133 * 14 11 10 16 16 N 1.34779 * 119.99767 * 280.00363 * 14 11 10 17 17 C 1.46504 * 119.99928 * 180.02562 * 16 14 11 18 18 C 1.50701 * 109.47358 * 179.97438 * 17 16 14 19 19 C 1.32914 * 125.20532 * 89.99846 * 18 17 16 20 20 C 1.39203 * 115.70236 * 179.73305 * 19 18 17 21 21 C 1.34637 * 113.66838 * 0.02562 * 20 19 18 22 22 S 1.75727 * 125.20879 * 269.69796 * 18 17 16 23 23 C 1.51400 * 124.78937 * 179.97438 * 21 20 19 24 24 C 1.53167 * 108.70065 * 343.68163 * 23 21 20 25 25 C 1.53151 * 108.96782 * 49.66329 * 24 23 21 26 26 C 1.52276 * 123.50355 * 179.97438 * 20 19 18 27 27 H 0.96998 * 119.99849 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47237 * 60.00482 * 9 7 2 29 29 H 1.08994 * 109.47457 * 300.00256 * 9 7 2 30 30 H 1.08999 * 109.46769 * 60.00111 * 10 9 7 31 31 H 1.09002 * 109.47055 * 300.00690 * 10 9 7 32 32 H 1.00895 * 111.00530 * 300.00112 * 13 11 10 33 33 H 1.00909 * 110.99887 * 63.96163 * 13 11 10 34 34 H 0.96996 * 120.00397 * 359.97438 * 16 14 11 35 35 H 1.09001 * 109.47011 * 59.99740 * 17 16 14 36 36 H 1.08995 * 109.46935 * 299.99901 * 17 16 14 37 37 H 1.07997 * 122.14581 * 359.71305 * 19 18 17 38 38 H 1.09002 * 109.59870 * 223.91898 * 23 21 20 39 39 H 1.09003 * 109.60235 * 103.44683 * 23 21 20 40 40 H 1.09003 * 109.55849 * 289.81750 * 24 23 21 41 41 H 1.09007 * 109.55654 * 169.50862 * 24 23 21 42 42 H 1.08999 * 109.50435 * 169.49156 * 25 24 23 43 43 H 1.09004 * 109.49599 * 49.38722 * 25 24 23 44 44 H 1.09002 * 109.58637 * 282.34967 * 26 20 19 45 45 H 1.08997 * 109.57982 * 42.76310 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8433 13 7 0.7280 -5.1189 1.2537 14 6 2.4548 -6.1298 -0.1250 15 8 2.7862 -6.7537 0.8609 16 7 2.9581 -6.4585 -1.3313 17 6 3.9052 -7.5697 -1.4517 18 6 4.3120 -7.7291 -2.8940 19 6 5.3450 -7.1229 -3.4703 20 6 5.5441 -7.4180 -4.8161 21 6 4.6424 -8.2820 -5.3192 22 16 3.4976 -8.7504 -4.0695 23 6 4.6228 -8.7740 -6.7509 24 6 5.4984 -7.8479 -7.6004 25 6 6.8537 -7.6719 -6.9092 26 6 6.6718 -6.8235 -5.6490 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8905 32 1 1.3475 -5.1034 2.0499 33 1 0.0231 -4.4008 1.3299 34 1 2.6928 -5.9598 -2.1198 35 1 3.4332 -8.4887 -1.1040 36 1 4.7873 -7.3626 -0.8459 37 1 5.9883 -6.4448 -2.9293 38 1 3.6005 -8.7587 -7.1287 39 1 5.0158 -9.7898 -6.7939 40 1 5.0120 -6.8777 -7.7020 41 1 5.6462 -8.2886 -8.5864 42 1 7.5458 -7.1725 -7.5871 43 1 7.2524 -8.6489 -6.6361 44 1 6.4189 -5.8011 -5.9297 45 1 7.5951 -6.8277 -5.0697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567660301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:31 Heat of formation + Delta-G solvation = -59.841807 kcal Electronic energy + Delta-G solvation = -23969.856942 eV Core-core repulsion = 20497.213195 eV Total energy + Delta-G solvation = -3472.643747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00580 -40.09587 -37.37261 -36.81462 -35.17110 -34.84232 -31.71814 -31.69703 -31.08687 -28.42154 -27.01604 -25.29516 -24.57465 -23.24373 -22.39794 -21.53936 -21.12401 -19.12166 -18.80255 -18.33814 -18.00029 -17.19917 -16.58090 -16.26839 -16.04003 -15.87834 -15.62371 -15.48736 -14.85205 -14.71324 -14.65731 -14.54249 -14.33439 -13.94195 -13.85434 -13.61238 -13.48215 -13.25610 -12.93575 -12.93058 -12.69382 -12.53300 -12.37233 -11.96493 -11.81406 -11.73583 -11.71925 -11.49338 -11.31109 -11.22002 -10.83549 -10.56564 -10.21119 -9.68300 -9.47198 -9.24044 -8.21937 -6.32391 -0.10089 0.58870 1.01525 1.39260 1.40051 1.50615 1.56525 1.58863 2.26008 2.39901 3.11753 3.47788 3.73914 3.75458 3.77712 3.99614 4.03275 4.09780 4.15631 4.23209 4.27904 4.33528 4.51850 4.54826 4.63873 4.65318 4.76821 4.82995 4.89133 4.91401 5.03958 5.07635 5.11426 5.19784 5.26295 5.29692 5.43823 5.45935 5.47212 5.63645 5.64772 5.80035 6.05193 6.20638 6.45060 6.47213 6.83067 7.15265 7.36782 8.88923 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.002699 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.335493 B =10371.085164 C =11960.277413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.082 3.918 12 H 0.108 0.892 13 N -0.830 5.830 14 C 0.530 3.470 15 O -0.569 6.569 16 N -0.717 5.717 17 C 0.200 3.800 18 C -0.215 4.215 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.174 4.174 22 S 0.103 5.897 23 C -0.051 4.051 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.059 4.059 27 H 0.264 0.736 28 H 0.001 0.999 29 H 0.003 0.997 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.344 0.656 33 H 0.353 0.647 34 H 0.411 0.589 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -18.602 -16.635 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.034 4.034 12 H 0.126 0.874 13 N -0.361 5.361 14 C 0.316 3.684 15 O -0.448 6.448 16 N -0.370 5.370 17 C 0.075 3.925 18 C -0.332 4.332 19 C -0.138 4.138 20 C -0.132 4.132 21 C -0.292 4.292 22 S 0.371 5.629 23 C -0.090 4.090 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.098 4.098 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.162 0.838 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.993 -20.660 -16.112 28.413 hybrid contribution 1.460 3.105 0.275 3.443 sum 12.454 -17.555 -15.837 26.722 Atomic orbital electron populations 1.70064 1.07509 1.27779 1.51348 1.25874 0.95736 1.03006 0.94732 0.85532 0.78637 0.78898 0.78513 1.19671 1.20805 1.19184 1.21618 0.93357 0.92445 1.50873 0.92693 1.18968 0.94028 0.92007 0.95721 1.22124 0.98781 0.93639 1.01424 1.21397 0.94720 0.91261 0.95992 0.87412 1.58751 1.18398 1.55682 1.03301 1.20726 0.80814 0.84113 0.82728 1.90627 1.61347 1.54527 1.38250 1.46022 1.46313 1.34974 1.09661 1.19527 0.93086 0.89923 0.89928 1.23989 1.02957 1.07013 0.99234 1.20230 0.98061 1.00671 0.94808 1.19842 0.99566 0.99969 0.93779 1.25231 0.99414 1.03949 1.00607 1.84257 1.31685 1.46198 1.00774 1.20454 1.01693 1.00004 0.86837 1.21598 0.95266 0.99627 0.98797 1.21560 0.97543 1.00337 0.96128 1.20623 0.94868 0.99006 0.95288 0.92720 0.98029 0.97878 0.93566 0.91661 0.84248 0.83179 0.75265 0.90989 0.89979 0.83793 0.89899 0.89208 0.91941 0.89350 0.89933 0.91651 0.90383 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -30.01 9.11 25.60 0.23 -29.77 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.03 1.47 4.74 29.85 0.14 1.62 16 10 C -0.12 -4.70 4.78 30.59 0.15 -4.56 16 11 C 0.08 2.78 3.21 44.17 0.14 2.92 16 12 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 13 N -0.83 -29.05 8.93 -171.81 -1.54 -30.59 16 14 C 0.53 17.49 7.08 87.66 0.62 18.11 16 15 O -0.57 -22.27 16.25 -3.04 -0.05 -22.32 16 16 N -0.72 -18.76 5.55 -466.77 -2.59 -21.35 16 17 C 0.20 4.72 6.16 85.63 0.53 5.24 16 18 C -0.21 -4.44 5.86 24.51 0.14 -4.30 16 19 C -0.11 -2.06 9.86 21.33 0.21 -1.85 16 20 C -0.12 -2.11 5.78 -19.95 -0.12 -2.23 16 21 C -0.17 -2.97 6.35 25.08 0.16 -2.81 16 22 S 0.10 1.95 23.30 -56.49 -1.32 0.63 16 23 C -0.05 -0.60 6.26 30.13 0.19 -0.41 16 24 C -0.11 -1.10 5.94 30.70 0.18 -0.92 16 25 C -0.12 -1.17 5.88 30.65 0.18 -0.99 16 26 C -0.06 -0.77 6.15 30.36 0.19 -0.58 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.00 0.15 6.87 -2.39 -0.02 0.14 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.34 12.25 8.58 -89.70 -0.77 11.48 16 33 H 0.35 12.48 7.55 -89.69 -0.68 11.80 16 34 H 0.41 9.55 8.46 -92.71 -0.78 8.77 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.70 8.11 -2.39 -0.02 0.68 16 41 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 0.66 8.10 -2.38 -0.02 0.64 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -66.05 380.28 -0.99 -67.03 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -1.22 Total: 35.20 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 3.41 Total: -19.78 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -3.84 Total: -106.17 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.32 Total: 0.63 kcal Total: -66.05 -0.99 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567660301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.192 kcal (2) G-P(sol) polarization free energy of solvation -66.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds