Wall clock time and date at job start Tue Mar 31 2020 12:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35038 * 124.88426 * 2 1 4 4 C 1.35370 * 107.22947 * 180.28321 * 3 2 1 5 5 N 1.48006 * 127.24770 * 179.70078 * 4 3 2 6 6 O 1.21801 * 119.99768 * 0.02562 * 5 4 3 7 7 O 1.21798 * 119.99956 * 180.02562 * 5 4 3 8 8 C 1.41503 * 105.50334 * 359.60206 * 4 3 2 9 9 C 1.47707 * 126.52008 * 180.15307 * 8 4 3 10 10 O 1.21572 * 119.99932 * 6.37822 * 9 8 4 11 11 N 1.34780 * 120.00066 * 186.38110 * 9 8 4 12 12 C 1.46921 * 120.63096 * 186.63350 * 11 9 8 13 13 C 1.52762 * 109.00649 * 233.58133 * 12 11 9 14 14 C 1.53038 * 109.38535 * 305.58819 * 13 12 11 15 15 C 1.52997 * 109.45256 * 181.25469 * 14 13 12 16 16 C 1.50702 * 109.47108 * 64.93095 * 15 14 13 17 17 H 1.08003 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99976 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99757 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47286 * 60.00177 * 20 18 16 22 22 H 1.48493 * 109.47197 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47091 * 300.00106 * 20 18 16 24 24 C 1.53043 * 109.53855 * 61.23787 * 14 13 12 25 25 C 1.46927 * 120.63117 * 6.90872 * 11 9 8 26 26 N 1.28470 * 124.88751 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47136 * 90.00776 * 1 2 3 28 28 H 1.09006 * 109.46960 * 210.00050 * 1 2 3 29 29 H 1.08996 * 109.47499 * 330.00399 * 1 2 3 30 30 H 1.07995 * 126.38648 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.58522 * 353.41246 * 12 11 9 32 32 H 1.08997 * 109.58940 * 113.83645 * 12 11 9 33 33 H 1.08995 * 109.56347 * 185.54540 * 13 12 11 34 34 H 1.09007 * 109.36203 * 65.49738 * 13 12 11 35 35 H 1.09007 * 109.45570 * 301.21815 * 14 13 12 36 36 H 1.08993 * 109.47381 * 184.93894 * 15 14 13 37 37 H 1.08999 * 109.47101 * 304.93972 * 15 14 13 38 38 H 0.96998 * 119.99093 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.49651 * 178.68641 * 24 14 13 40 40 H 1.08994 * 109.52120 * 58.60222 * 24 14 13 41 41 H 1.09005 * 109.58462 * 246.16041 * 25 11 9 42 42 H 1.09005 * 109.58378 * 6.43872 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2372 1.1077 0.0000 4 6 3.5272 0.6972 -0.0064 5 7 4.7381 1.5482 -0.0150 6 8 4.6298 2.7614 -0.0166 7 8 5.8428 1.0353 -0.0206 8 6 3.4741 -0.7168 -0.0007 9 6 4.6273 -1.6398 -0.0011 10 8 5.7561 -1.2022 0.1102 11 7 4.4282 -2.9670 -0.1250 12 6 5.5472 -3.9083 0.0176 13 6 5.6009 -4.8079 -1.2159 14 6 4.2388 -5.4760 -1.4170 15 6 4.2999 -6.4015 -2.6338 16 6 5.2621 -7.5286 -2.3598 17 1 5.7781 -7.5799 -1.4124 18 6 5.4829 -8.4948 -3.3183 19 7 4.8542 -8.4326 -4.4717 20 14 6.6750 -9.8922 -2.9784 21 1 6.2129 -10.6603 -1.7945 22 1 6.7345 -10.7904 -4.1594 23 1 8.0260 -9.3365 -2.7113 24 6 3.1713 -4.4034 -1.6454 25 6 3.0891 -3.4996 -0.4112 26 7 2.1997 -1.0538 -0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.8905 2.1305 0.0004 31 1 6.4819 -3.3543 0.1050 32 1 5.3985 -4.5207 0.9070 33 1 6.3645 -5.5731 -1.0766 34 1 5.8438 -4.2062 -2.0917 35 1 3.9853 -6.0577 -0.5306 36 1 3.3085 -6.8097 -2.8300 37 1 4.6391 -5.8375 -3.5026 38 1 5.0099 -9.1122 -5.1461 39 1 2.2057 -4.8808 -1.8117 40 1 3.4366 -3.8054 -2.5171 41 1 2.7359 -4.0781 0.4425 42 1 2.4018 -2.6759 -0.6040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567947003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:34 Heat of formation + Delta-G solvation = 53.382704 kcal Electronic energy + Delta-G solvation = -27582.414093 eV Core-core repulsion = 23568.386915 eV Total energy + Delta-G solvation = -4014.027178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.81101 -41.72145 -39.85306 -37.35323 -36.34826 -34.49691 -34.00614 -32.39771 -31.89688 -30.75520 -28.76497 -27.98358 -26.58110 -24.77476 -23.44498 -22.69477 -22.04345 -21.53409 -20.30893 -19.26328 -18.74602 -18.30405 -17.75422 -17.34064 -16.83360 -16.68933 -16.24334 -15.76853 -15.05962 -14.54121 -14.48373 -13.85617 -13.74964 -13.64454 -13.59667 -13.26634 -12.99055 -12.86791 -12.36873 -11.98730 -11.59829 -11.42068 -11.23687 -11.12719 -10.97599 -10.88602 -10.73954 -10.67880 -10.41552 -10.35872 -10.12841 -10.04982 -9.85561 -9.62681 -9.23046 -8.95724 -8.37136 -8.33635 -5.99631 -4.01445 0.03656 0.84100 1.01507 1.63440 1.82367 2.88256 3.11505 3.33614 3.38343 3.40593 3.54119 3.75887 4.08933 4.32907 4.35943 4.45046 4.46466 4.65662 4.89520 5.23774 5.35590 5.41316 5.46214 5.56730 5.62954 5.75690 5.95556 5.99652 6.16125 6.34302 6.36839 6.37996 6.53248 6.66178 6.89995 6.99595 7.03095 7.12573 7.46179 7.65991 7.73812 7.81125 7.99904 8.14349 8.42621 9.04763 9.62446 11.11665 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.002945 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.671224 B = 9504.063710 C =10383.280710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.274 5.274 3 C 0.082 3.918 4 C -0.121 4.121 5 N 0.053 4.947 6 O -0.195 6.195 7 O -0.081 6.081 8 C 0.067 3.933 9 C 0.577 3.423 10 O -0.489 6.489 11 N -0.587 5.587 12 C 0.111 3.889 13 C -0.119 4.119 14 C -0.082 4.082 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.128 4.128 25 C 0.087 3.913 26 N -0.236 5.236 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.210 0.790 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 19.165 10.579 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.058 5.058 3 C -0.068 4.068 4 C -0.217 4.217 5 N 0.576 4.424 6 O -0.397 6.397 7 O -0.312 6.312 8 C -0.097 4.097 9 C 0.360 3.640 10 O -0.360 6.360 11 N -0.321 5.321 12 C -0.011 4.011 13 C -0.157 4.157 14 C -0.100 4.100 15 C -0.009 4.009 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.167 4.167 25 C -0.036 4.036 26 N -0.070 5.070 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.227 0.773 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.047 18.071 10.484 25.175 hybrid contribution 1.082 -0.028 -0.032 1.083 sum -12.965 18.043 10.452 24.554 Atomic orbital electron populations 1.22525 0.70745 1.06742 1.05895 1.45778 1.08994 1.02508 1.48533 1.22587 0.88685 0.95545 0.99938 1.21075 0.87041 0.90987 1.22575 1.42323 1.01393 1.00371 0.98303 1.94517 1.93466 0.95566 1.56172 1.94793 1.09926 1.76816 1.49709 1.22328 0.92110 0.91121 1.04103 1.16875 0.86190 0.81681 0.79280 1.90998 1.21178 1.75475 1.48384 1.47994 1.11046 1.04522 1.68500 1.21801 0.89156 0.90792 0.99316 1.21831 0.99596 0.98128 0.96101 1.21214 0.92425 0.95065 1.01330 1.19112 0.96953 0.93154 0.91633 1.21211 1.24848 1.08642 1.00791 0.92588 1.25019 0.96164 0.98075 0.95187 1.69955 1.42622 1.35120 1.05906 0.86697 0.81760 0.82222 0.77572 1.20308 1.21395 1.20186 1.22022 1.00610 0.97507 0.96513 1.22496 0.83160 0.99443 0.98507 1.73990 1.01464 1.11986 1.19547 0.88284 0.87192 0.87572 0.77298 0.89152 0.91464 0.89497 0.92225 0.92304 0.96697 0.96663 0.93017 0.91156 0.92277 0.91602 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.09 11.31 59.84 0.68 0.77 16 2 N -0.27 -1.82 3.70 -68.13 -0.25 -2.07 16 3 C 0.08 0.60 11.21 -17.16 -0.19 0.41 16 4 C -0.12 -1.51 7.25 -79.73 -0.58 -2.09 16 5 N 0.05 0.81 4.45 34.07 0.15 0.96 16 6 O -0.20 -2.80 19.07 -29.46 -0.56 -3.36 16 7 O -0.08 -1.45 15.64 -37.21 -0.58 -2.03 16 8 C 0.07 0.90 6.84 -82.76 -0.57 0.34 16 9 C 0.58 9.40 7.69 -12.39 -0.10 9.31 16 10 O -0.49 -9.29 12.90 -19.18 -0.25 -9.53 16 11 N -0.59 -9.08 2.98 -174.19 -0.52 -9.60 16 12 C 0.11 1.76 6.41 -3.93 -0.03 1.73 16 13 C -0.12 -2.18 5.17 -26.83 -0.14 -2.32 16 14 C -0.08 -1.58 2.10 -90.58 -0.19 -1.77 16 15 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 16 C -0.52 -14.09 8.39 -34.44 -0.29 -14.38 16 17 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 25 C 0.09 1.19 6.12 -3.71 -0.02 1.17 16 26 N -0.24 -2.47 8.44 33.42 0.28 -2.18 16 27 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.11 -0.19 8.13 -51.93 -0.42 -0.61 16 30 H 0.21 0.65 8.06 -52.49 -0.42 0.22 16 31 H 0.09 1.47 7.00 -51.93 -0.36 1.10 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.69 6.91 -51.93 -0.36 1.33 16 34 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.11 1.36 4.14 -73.26 -0.30 1.06 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -35.67 350.11 -8.12 -43.80 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -5.60 Total: -4.78 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.78 Total: -6.97 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.40 Total: -38.83 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.39 Total: -14.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.67 -8.12 -43.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567947003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.181 kcal (2) G-P(sol) polarization free energy of solvation -35.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds