Wall clock time and date at job start Tue Mar 31 2020 12:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35038 * 124.88426 * 2 1 4 4 C 1.35370 * 107.22947 * 180.28321 * 3 2 1 5 5 N 1.48006 * 127.24770 * 179.70078 * 4 3 2 6 6 O 1.21801 * 119.99768 * 0.02562 * 5 4 3 7 7 O 1.21798 * 119.99956 * 180.02562 * 5 4 3 8 8 C 1.41503 * 105.50334 * 359.60206 * 4 3 2 9 9 C 1.47707 * 126.52008 * 180.15307 * 8 4 3 10 10 O 1.21572 * 119.99932 * 6.37822 * 9 8 4 11 11 N 1.34780 * 120.00066 * 186.38110 * 9 8 4 12 12 C 1.46921 * 120.63096 * 186.63350 * 11 9 8 13 13 C 1.52762 * 109.00649 * 233.58133 * 12 11 9 14 14 C 1.53038 * 109.38535 * 305.58819 * 13 12 11 15 15 C 1.52997 * 109.45256 * 181.25469 * 14 13 12 16 16 C 1.50702 * 109.47108 * 64.93095 * 15 14 13 17 17 H 1.08003 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99976 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99757 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47286 * 60.00177 * 20 18 16 22 22 H 1.48493 * 109.47197 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47091 * 300.00106 * 20 18 16 24 24 C 1.53043 * 109.53855 * 61.23787 * 14 13 12 25 25 C 1.46927 * 120.63117 * 6.90872 * 11 9 8 26 26 N 1.28470 * 124.88751 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47136 * 90.00776 * 1 2 3 28 28 H 1.09006 * 109.46960 * 210.00050 * 1 2 3 29 29 H 1.08996 * 109.47499 * 330.00399 * 1 2 3 30 30 H 1.07995 * 126.38648 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.58522 * 353.41246 * 12 11 9 32 32 H 1.08997 * 109.58940 * 113.83645 * 12 11 9 33 33 H 1.08995 * 109.56347 * 185.54540 * 13 12 11 34 34 H 1.09007 * 109.36203 * 65.49738 * 13 12 11 35 35 H 1.09007 * 109.45570 * 301.21815 * 14 13 12 36 36 H 1.08993 * 109.47381 * 184.93894 * 15 14 13 37 37 H 1.08999 * 109.47101 * 304.93972 * 15 14 13 38 38 H 0.96998 * 119.99093 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.49651 * 178.68641 * 24 14 13 40 40 H 1.08994 * 109.52120 * 58.60222 * 24 14 13 41 41 H 1.09005 * 109.58462 * 246.16041 * 25 11 9 42 42 H 1.09005 * 109.58378 * 6.43872 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2372 1.1077 0.0000 4 6 3.5272 0.6972 -0.0064 5 7 4.7381 1.5482 -0.0150 6 8 4.6298 2.7614 -0.0166 7 8 5.8428 1.0353 -0.0206 8 6 3.4741 -0.7168 -0.0007 9 6 4.6273 -1.6398 -0.0011 10 8 5.7561 -1.2022 0.1102 11 7 4.4282 -2.9670 -0.1250 12 6 5.5472 -3.9083 0.0176 13 6 5.6009 -4.8079 -1.2159 14 6 4.2388 -5.4760 -1.4170 15 6 4.2999 -6.4015 -2.6338 16 6 5.2621 -7.5286 -2.3598 17 1 5.7781 -7.5799 -1.4124 18 6 5.4829 -8.4948 -3.3183 19 7 4.8542 -8.4326 -4.4717 20 14 6.6750 -9.8922 -2.9784 21 1 6.2129 -10.6603 -1.7945 22 1 6.7345 -10.7904 -4.1594 23 1 8.0260 -9.3365 -2.7113 24 6 3.1713 -4.4034 -1.6454 25 6 3.0891 -3.4996 -0.4112 26 7 2.1997 -1.0538 -0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.8905 2.1305 0.0004 31 1 6.4819 -3.3543 0.1050 32 1 5.3985 -4.5207 0.9070 33 1 6.3645 -5.5731 -1.0766 34 1 5.8438 -4.2062 -2.0917 35 1 3.9853 -6.0577 -0.5306 36 1 3.3085 -6.8097 -2.8300 37 1 4.6391 -5.8375 -3.5026 38 1 5.0099 -9.1122 -5.1461 39 1 2.2057 -4.8808 -1.8117 40 1 3.4366 -3.8054 -2.5171 41 1 2.7359 -4.0781 0.4425 42 1 2.4018 -2.6759 -0.6040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567947003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:33 Heat of formation + Delta-G solvation = 30.954440 kcal Electronic energy + Delta-G solvation = -27583.386656 eV Core-core repulsion = 23568.386915 eV Total energy + Delta-G solvation = -4014.999741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.56763 -42.77790 -41.10544 -38.76189 -37.44987 -35.81426 -35.02304 -34.04613 -32.99821 -31.99626 -30.08677 -28.97485 -27.66834 -26.36059 -24.63438 -23.99735 -23.00003 -22.82085 -21.54913 -20.52408 -19.82500 -19.36378 -18.70881 -18.52938 -18.19117 -17.57238 -17.41212 -16.92372 -16.54655 -16.20799 -15.47062 -15.15696 -14.94254 -14.65846 -14.61971 -14.34889 -13.94034 -13.84289 -13.72872 -13.50484 -13.08463 -12.78481 -12.70807 -12.53125 -12.48862 -12.38106 -12.17232 -12.13181 -12.10353 -11.68651 -11.34085 -11.19687 -11.14554 -11.04521 -10.80819 -10.65988 -10.51519 -9.67442 -8.17134 -6.26198 -0.97246 0.03265 0.21742 0.68537 1.17579 1.40643 1.43128 1.50347 1.78674 1.97589 2.42320 2.77296 3.06121 3.16548 3.32915 3.70711 3.90739 4.02177 4.06409 4.09071 4.19728 4.33837 4.38094 4.39621 4.60137 4.65150 4.71889 4.83660 4.87658 4.96273 5.05271 5.20894 5.25534 5.30134 5.31293 5.38151 5.54022 5.59015 5.79660 5.89150 6.10582 6.28461 6.30540 6.59382 6.90124 6.94925 7.42330 8.94551 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.002945 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.671224 B = 9504.063710 C =10383.280710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.255 5.255 3 C 0.122 3.878 4 C -0.155 4.155 5 N 0.058 4.942 6 O -0.155 6.155 7 O -0.178 6.178 8 C 0.036 3.964 9 C 0.570 3.430 10 O -0.527 6.527 11 N -0.591 5.591 12 C 0.119 3.881 13 C -0.111 4.111 14 C -0.074 4.074 15 C 0.034 3.966 16 C -0.530 4.530 17 H 0.064 0.936 18 C -0.002 4.002 19 N -0.936 5.936 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.270 1.270 24 C -0.122 4.122 25 C 0.096 3.904 26 N -0.232 5.232 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.147 0.853 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.067 0.933 36 H -0.007 1.007 37 H -0.019 1.019 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 20.496 12.280 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.039 5.039 3 C -0.028 4.028 4 C -0.252 4.252 5 N 0.574 4.426 6 O -0.372 6.372 7 O -0.386 6.386 8 C -0.126 4.126 9 C 0.355 3.645 10 O -0.401 6.401 11 N -0.324 5.324 12 C -0.003 4.003 13 C -0.149 4.149 14 C -0.092 4.092 15 C -0.003 4.003 16 C -0.568 4.568 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.577 5.577 20 Si 0.783 3.217 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.195 1.195 24 C -0.160 4.160 25 C -0.026 4.026 26 N -0.068 5.068 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.165 0.835 30 H 0.278 0.722 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.011 0.989 37 H 0.000 1.000 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.119 19.258 12.199 28.508 hybrid contribution 1.761 -0.275 -0.599 1.881 sum -15.357 18.982 11.600 27.032 Atomic orbital electron populations 1.23184 0.66931 1.09214 1.07858 1.46382 1.10630 1.01354 1.45525 1.23320 0.86317 0.97463 0.95700 1.21262 0.87349 0.90520 1.26050 1.42637 1.02085 1.00579 0.97333 1.94439 1.93567 0.96174 1.53024 1.94831 1.11687 1.77045 1.55073 1.21858 0.92351 0.91228 1.07143 1.17304 0.86824 0.82021 0.78369 1.90982 1.23090 1.76134 1.49882 1.48077 1.11393 1.04474 1.68477 1.21626 0.89595 0.90568 0.98501 1.21685 0.98721 0.97855 0.96622 1.21065 0.94109 0.95200 0.98854 1.19001 0.95034 0.93379 0.92869 1.21662 1.24961 1.09117 1.01046 0.91770 1.25935 0.98026 1.00966 0.94974 1.70095 1.44391 1.36237 1.06967 0.85601 0.79482 0.78893 0.77706 1.18960 1.21250 1.19483 1.21930 0.99883 0.96777 0.97391 1.22558 0.82667 0.99699 0.97696 1.73794 1.00341 1.13668 1.18952 0.86465 0.86487 0.83511 0.72218 0.90004 0.89352 0.90851 0.94445 0.91447 0.98852 1.00014 0.93015 0.89839 0.93878 0.89628 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.23 11.31 127.77 1.44 1.21 16 2 N -0.25 -2.17 3.70 -369.46 -1.37 -3.53 16 3 C 0.12 1.22 11.21 83.54 0.94 2.16 16 4 C -0.15 -3.62 7.25 36.52 0.26 -3.36 16 5 N 0.06 1.78 4.45 -46.13 -0.21 1.57 16 6 O -0.15 -4.21 19.07 18.88 0.36 -3.85 16 7 O -0.18 -6.89 15.64 26.30 0.41 -6.48 16 8 C 0.04 0.95 6.84 42.46 0.29 1.24 16 9 C 0.57 19.15 7.69 86.75 0.67 19.82 16 10 O -0.53 -21.50 12.90 19.47 0.25 -21.25 16 11 N -0.59 -18.35 2.98 -823.29 -2.45 -20.80 16 12 C 0.12 3.85 6.41 86.22 0.55 4.41 16 13 C -0.11 -4.23 5.17 30.53 0.16 -4.08 16 14 C -0.07 -2.90 2.10 -10.77 -0.02 -2.92 16 15 C 0.03 1.77 4.45 29.85 0.13 1.90 16 16 C -0.53 -29.51 8.39 25.60 0.21 -29.29 16 17 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 18 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 19 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 20 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C -0.12 -3.90 5.36 30.67 0.16 -3.73 16 25 C 0.10 2.49 6.12 86.36 0.53 3.02 16 26 N -0.23 -4.17 8.44 -48.17 -0.41 -4.57 16 27 H 0.12 -0.69 8.14 -2.38 -0.02 -0.71 16 28 H 0.12 -0.46 8.14 -2.38 -0.02 -0.48 16 29 H 0.15 -1.60 8.13 -2.39 -0.02 -1.62 16 30 H 0.26 -0.24 8.06 -2.91 -0.02 -0.26 16 31 H 0.08 2.81 7.00 -2.39 -0.02 2.79 16 32 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.07 2.97 6.91 -2.39 -0.02 2.95 16 34 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 36 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 1.93 8.14 -2.38 -0.02 1.92 16 42 H 0.13 2.90 4.14 -29.99 -0.12 2.78 16 Total: -1.00 -85.08 350.11 5.63 -79.45 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: 0.94 Total: -0.77 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.79 Total: -9.26 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -4.15 Total: -84.28 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: 1.02 Total: -31.58 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -85.08 5.63 -79.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567947003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.402 kcal (2) G-P(sol) polarization free energy of solvation -85.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds