Wall clock time and date at job start Tue Mar 31 2020 13:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47180 * 304.99367 * 11 10 9 13 13 N 1.46897 * 109.47737 * 64.99704 * 11 10 9 14 14 C 1.50699 * 109.47021 * 184.99834 * 11 10 9 15 15 O 1.21276 * 120.00379 * 259.99394 * 14 11 10 16 16 N 1.34779 * 120.00097 * 79.99539 * 14 11 10 17 17 C 1.46504 * 120.00256 * 179.97438 * 16 14 11 18 18 H 1.09001 * 109.69225 * 325.00062 * 17 16 14 19 19 C 1.53404 * 109.69238 * 85.55488 * 17 16 14 20 20 O 1.42817 * 108.36748 * 184.40577 * 19 17 16 21 21 C 1.35851 * 117.88116 * 310.85587 * 20 19 17 22 22 C 1.39110 * 118.47037 * 197.05012 * 21 20 19 23 23 C 1.38176 * 120.20098 * 180.20358 * 22 21 20 24 24 F 1.35102 * 120.05327 * 180.02562 * 23 22 21 25 25 C 1.38530 * 119.90165 * 0.03019 * 23 22 21 26 26 C 1.38062 * 119.95502 * 359.91632 * 25 23 22 27 27 C 1.38393 * 121.80583 * 17.14120 * 21 20 19 28 28 C 1.50774 * 121.39964 * 359.65516 * 27 21 20 29 29 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.00906 * 110.99511 * 59.99734 * 13 11 10 35 35 H 1.00894 * 111.00198 * 183.95553 * 13 11 10 36 36 H 0.97005 * 120.00286 * 359.97438 * 16 14 11 37 37 H 1.08995 * 109.68939 * 304.17030 * 19 17 16 38 38 H 1.09004 * 109.68860 * 64.73875 * 19 17 16 39 39 H 1.08007 * 119.89493 * 0.23323 * 22 21 20 40 40 H 1.07995 * 120.02092 * 179.91268 * 25 23 22 41 41 H 1.07998 * 119.82236 * 180.02562 * 26 25 23 42 42 H 1.09002 * 109.43807 * 257.61126 * 28 27 21 43 43 H 1.09008 * 109.39923 * 137.72404 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 1 5.9187 -2.0488 -0.8235 13 7 6.0355 -2.0489 1.2741 14 6 6.0543 -4.0522 -0.1011 15 8 6.4240 -4.6495 0.8876 16 7 6.0933 -4.6545 -1.3061 17 6 6.5827 -6.0306 -1.4218 18 1 7.3863 -6.1962 -0.7042 19 6 5.4356 -7.0119 -1.1491 20 8 5.9642 -8.3385 -1.1671 21 6 6.7492 -8.6953 -2.2169 22 6 6.9748 -10.0487 -2.4463 23 6 7.7708 -10.4516 -3.5014 24 9 7.9874 -11.7668 -3.7218 25 6 8.3465 -9.5049 -4.3330 26 6 8.1225 -8.1615 -4.1070 27 6 7.3237 -7.7528 -3.0517 28 6 7.0999 -6.2766 -2.8413 29 1 -0.4849 0.8400 0.0004 30 1 3.8786 -0.6821 -0.8838 31 1 3.8711 -0.6785 0.8962 32 1 3.6545 -3.1486 0.9003 33 1 3.6618 -3.1522 -0.8796 34 1 5.7083 -2.5764 2.0697 35 1 7.0420 -1.9783 1.2761 36 1 5.7974 -4.1770 -2.0969 37 1 4.9983 -6.8034 -0.1727 38 1 4.6739 -6.9105 -1.9223 39 1 6.5259 -10.7867 -1.7980 40 1 8.9701 -9.8177 -5.1573 41 1 8.5721 -7.4253 -4.7569 42 1 6.3669 -5.9145 -3.5622 43 1 8.0406 -5.7442 -2.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570108526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:01 Heat of formation + Delta-G solvation = -130.564357 kcal Electronic energy + Delta-G solvation = -26372.255113 eV Core-core repulsion = 22330.331430 eV Total energy + Delta-G solvation = -4041.923683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.99538 -42.04618 -40.88075 -38.47070 -37.09493 -36.54139 -34.76809 -33.59236 -32.26424 -31.56902 -30.63573 -28.32593 -26.86653 -25.62374 -24.33658 -23.66622 -22.13916 -21.54065 -21.11013 -19.44098 -18.99266 -18.38837 -18.26733 -17.44345 -17.08269 -17.03547 -16.69771 -16.37592 -16.22484 -16.16286 -15.81215 -15.63848 -15.03893 -14.96270 -14.80916 -14.66996 -14.51946 -14.19413 -14.01473 -13.96056 -13.45571 -12.89344 -12.79130 -12.74944 -12.53473 -12.35727 -12.06984 -11.97873 -11.83805 -11.72645 -11.57080 -11.28579 -11.11605 -10.68973 -10.29341 -9.84457 -9.66100 -9.30154 -8.23104 -6.26191 0.00605 0.19221 1.41416 1.44666 1.45956 1.59041 1.81155 2.20867 2.43361 2.48022 3.13792 3.28304 3.42549 3.45976 3.54374 3.67201 3.75497 3.86213 3.98932 4.04979 4.11140 4.17758 4.29689 4.35727 4.42699 4.44441 4.73750 4.81132 4.83228 4.87653 4.96334 4.98433 5.13272 5.17477 5.26386 5.30320 5.53497 5.65853 5.68255 5.77086 6.08380 6.23384 6.34480 6.41567 6.53833 6.83191 7.10567 7.38474 8.93700 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.002243 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.825140 B =12481.077089 C =12743.548121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.000 4.000 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.529 4.529 8 H 0.028 0.972 9 C 0.001 3.999 10 C -0.080 4.080 11 C 0.086 3.914 12 H 0.127 0.873 13 N -0.820 5.820 14 C 0.490 3.510 15 O -0.578 6.578 16 N -0.704 5.704 17 C 0.115 3.885 18 H 0.080 0.920 19 C 0.050 3.950 20 O -0.325 6.325 21 C 0.137 3.863 22 C -0.202 4.202 23 C 0.117 3.883 24 F -0.143 7.143 25 C -0.180 4.180 26 C -0.044 4.044 27 C -0.168 4.168 28 C -0.076 4.076 29 H 0.264 0.736 30 H 0.025 0.975 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.345 0.655 35 H 0.349 0.651 36 H 0.422 0.578 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.112 0.888 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.646 -15.347 -12.088 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.196 4.196 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.167 1.167 7 C -0.568 4.568 8 H 0.046 0.954 9 C -0.036 4.036 10 C -0.119 4.119 11 C -0.030 4.030 12 H 0.144 0.856 13 N -0.349 5.349 14 C 0.276 3.724 15 O -0.458 6.458 16 N -0.358 5.358 17 C 0.009 3.991 18 H 0.098 0.902 19 C -0.026 4.026 20 O -0.238 6.238 21 C 0.092 3.908 22 C -0.221 4.221 23 C 0.097 3.903 24 F -0.121 7.121 25 C -0.199 4.199 26 C -0.061 4.061 27 C -0.169 4.169 28 C -0.113 4.113 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.260 0.740 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.156 0.844 40 H 0.179 0.821 41 H 0.191 0.809 42 H 0.130 0.870 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.302 -15.174 -11.428 28.542 hybrid contribution -0.229 -0.538 0.255 0.638 sum 21.073 -15.711 -11.173 28.562 Atomic orbital electron populations 1.70087 1.08444 1.27985 1.53231 1.26039 0.95554 1.03669 0.94340 0.85625 0.79578 0.77990 0.79245 1.18814 1.21884 1.16676 1.21584 0.92636 0.92771 1.49767 0.95359 1.19379 0.92710 0.94136 0.97386 1.21275 0.90803 0.98622 1.01153 1.21706 0.96587 0.88588 0.96123 0.85563 1.59020 1.16606 1.55998 1.03317 1.22523 0.76396 0.90583 0.82940 1.90683 1.49749 1.67264 1.38076 1.45904 1.65729 1.13812 1.10377 1.21424 0.96243 0.81971 0.99492 0.90227 1.23477 0.95931 0.79008 1.04170 1.86027 1.63006 1.32825 1.41930 1.18598 0.91665 0.92572 0.87952 1.20514 1.05519 0.94889 1.01220 1.17464 0.98515 0.78020 0.96266 1.91499 1.93285 1.33085 1.94249 1.21353 1.03924 0.92630 1.01951 1.21111 0.94324 0.95622 0.95079 1.19989 1.02762 0.95259 0.98907 1.20779 1.04851 0.91310 0.94317 0.92747 0.95673 0.95409 0.94322 0.91099 0.84132 0.83741 0.74003 0.88721 0.89672 0.84374 0.82068 0.80889 0.86972 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.81 13.96 21.45 0.30 -59.51 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.95 43.62 27.47 68.60 1.88 45.50 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 7 C -0.53 -29.69 9.66 25.60 0.25 -29.44 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C 0.00 0.06 3.93 29.85 0.12 0.18 16 10 C -0.08 -2.77 4.78 30.59 0.15 -2.62 16 11 C 0.09 2.22 3.15 44.17 0.14 2.36 16 12 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 13 N -0.82 -22.38 8.44 -171.82 -1.45 -23.83 16 14 C 0.49 12.09 7.04 87.66 0.62 12.71 16 15 O -0.58 -18.46 15.92 -3.02 -0.05 -18.51 16 16 N -0.70 -12.02 5.10 -441.78 -2.25 -14.27 16 17 C 0.11 1.99 2.68 45.15 0.12 2.11 16 18 H 0.08 1.78 7.59 -2.39 -0.02 1.76 16 19 C 0.05 1.04 6.63 72.12 0.48 1.52 16 20 O -0.32 -7.65 10.27 -91.88 -0.94 -8.59 16 21 C 0.14 2.75 6.47 22.52 0.15 2.90 16 22 C -0.20 -4.00 9.91 22.46 0.22 -3.77 16 23 C 0.12 2.04 7.30 22.32 0.16 2.20 16 24 F -0.14 -2.72 17.27 44.97 0.78 -1.94 16 25 C -0.18 -2.18 10.03 22.30 0.22 -1.96 16 26 C -0.04 -0.44 9.66 22.30 0.22 -0.22 16 27 C -0.17 -2.38 5.75 -19.73 -0.11 -2.49 16 28 C -0.08 -0.78 5.36 29.89 0.16 -0.62 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.02 1.02 7.58 -2.38 -0.02 1.00 16 31 H 0.03 1.25 6.80 -2.39 -0.02 1.24 16 32 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.35 10.15 8.58 -89.69 -0.77 9.38 16 35 H 0.35 7.88 9.06 -89.70 -0.81 7.07 16 36 H 0.42 4.76 8.57 -92.70 -0.79 3.97 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 42 H 0.11 0.72 8.10 -2.39 -0.02 0.71 16 43 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -74.58 362.59 0.25 -74.33 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -1.37 Total: 23.53 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 3.35 Total: -16.71 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -3.40 Total: -97.62 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.99 Total: -27.10 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Total: -74.58 0.25 -74.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570108526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.233 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds