Wall clock time and date at job start Tue Mar 31 2020 13:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00103 * 2 1 4 4 H 1.48502 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47377 * 299.99712 * 3 2 1 6 6 H 1.48506 * 109.47201 * 59.99598 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99893 * 170.15629 * 7 2 1 9 9 C 1.41544 * 119.99830 * 350.16752 * 7 2 1 10 10 C 1.41173 * 120.99163 * 153.73117 * 9 7 2 11 11 C 1.37595 * 119.00940 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11023 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23373 * 359.65377 * 12 11 10 14 14 N 1.39467 * 119.58174 * 180.34224 * 13 12 11 15 15 C 1.34775 * 120.00029 * 5.65811 * 14 13 12 16 16 O 1.21279 * 120.00025 * 5.07897 * 15 14 13 17 17 C 1.50706 * 119.99986 * 185.07695 * 15 14 13 18 18 C 1.50701 * 109.46959 * 179.97438 * 17 15 14 19 19 C 1.38263 * 119.99694 * 269.72831 * 18 17 15 20 20 C 1.38215 * 119.99469 * 179.78960 * 19 18 17 21 21 C 1.38254 * 120.00298 * 0.46475 * 20 19 18 22 22 C 1.38219 * 120.00167 * 359.76347 * 21 20 19 23 23 C 1.50693 * 120.00463 * 180.02562 * 22 21 20 24 24 C 1.52999 * 117.49869 * 8.64862 * 23 22 21 25 25 C 1.52999 * 117.49699 * 300.02372 * 23 22 21 26 26 C 1.38208 * 120.00227 * 90.00078 * 18 17 15 27 27 C 1.38600 * 120.83629 * 0.63836 * 13 12 11 28 28 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.49570 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.44118 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99903 * 185.65656 * 14 13 12 32 32 H 1.08993 * 109.47260 * 299.99901 * 17 15 14 33 33 H 1.08998 * 109.47113 * 59.99988 * 17 15 14 34 34 H 1.07999 * 120.00375 * 359.97438 * 19 18 17 35 35 H 1.07996 * 119.99934 * 180.24687 * 20 19 18 36 36 H 1.07997 * 120.00548 * 179.79252 * 21 20 19 37 37 H 1.09000 * 115.55066 * 154.34999 * 23 22 21 38 38 H 1.09005 * 117.49586 * 359.97438 * 24 23 22 39 39 H 1.08999 * 117.50542 * 145.02539 * 24 23 22 40 40 H 1.09002 * 117.49622 * 214.97605 * 25 23 22 41 41 H 1.08994 * 117.50281 * 359.97438 * 25 23 22 42 42 H 1.08006 * 120.00034 * 359.97438 * 26 18 17 43 43 H 1.08003 * 120.59744 * 179.67474 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1594 9 6 1.3154 -2.4294 0.2104 10 6 1.8136 -3.6469 -0.3019 11 6 1.1073 -4.8056 -0.0741 12 7 -0.0215 -4.7930 0.6116 13 6 -0.5280 -3.6789 1.1184 14 7 -1.7205 -3.7306 1.8398 15 6 -2.2904 -4.9204 2.1153 16 8 -1.7211 -5.9490 1.8173 17 6 -3.6351 -4.9727 2.7937 18 6 -4.0454 -6.4101 2.9853 19 6 -4.7781 -7.0562 2.0069 20 6 -5.1507 -8.3758 2.1808 21 6 -4.7990 -9.0467 3.3373 22 6 -4.0705 -8.3995 4.3175 23 6 -3.6867 -9.1309 5.5778 24 6 -3.9524 -10.6368 5.6295 25 6 -4.8186 -9.6785 6.4495 26 6 -3.6942 -7.0808 4.1416 27 6 0.1091 -2.4616 0.9359 28 1 -0.4850 0.8401 -0.0004 29 1 2.7349 -3.6685 -0.8650 30 1 1.4818 -5.7408 -0.4632 31 1 -2.1397 -2.9101 2.1432 32 1 -3.5720 -4.4801 3.7639 33 1 -4.3742 -4.4637 2.1750 34 1 -5.0568 -6.5307 1.1054 35 1 -5.7196 -8.8817 1.4148 36 1 -5.0929 -10.0768 3.4747 37 1 -2.7961 -8.7591 6.0845 38 1 -4.4053 -11.0983 4.7519 39 1 -3.2367 -11.2560 6.1702 40 1 -4.6726 -9.6672 7.5296 41 1 -5.8410 -9.5093 6.1116 42 1 -3.1252 -6.5749 4.9077 43 1 -0.3100 -1.5548 1.3464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571528967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:35 Heat of formation + Delta-G solvation = 46.654377 kcal Electronic energy + Delta-G solvation = -25191.722517 eV Core-core repulsion = 21588.252840 eV Total energy + Delta-G solvation = -3603.469677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06485 -39.27206 -37.82776 -36.79630 -34.31276 -33.69523 -32.53538 -30.78224 -30.52897 -28.96758 -27.14058 -25.99282 -23.86525 -22.83461 -22.29893 -21.95114 -21.51189 -20.01282 -19.30461 -17.66684 -17.08745 -16.72763 -16.01271 -15.77656 -15.24859 -15.21457 -14.73228 -14.26700 -14.20068 -14.07824 -13.92999 -13.52361 -13.09149 -12.85659 -12.64376 -12.56285 -12.51317 -12.26574 -11.75864 -11.72927 -11.42952 -11.21477 -11.19692 -10.98769 -10.92142 -10.75065 -10.50742 -10.28396 -10.12292 -9.73236 -9.42317 -9.36460 -8.70933 -8.47020 -7.99122 -7.72312 -7.03835 -6.75325 -4.63812 1.34906 1.44329 2.55816 2.77337 3.00971 3.06407 3.18997 3.42333 3.48424 3.74534 3.84613 4.04856 4.37105 4.64840 4.68251 4.75293 4.80620 4.92754 5.00215 5.11483 5.22966 5.33232 5.37816 5.45716 5.55100 5.58153 5.67184 5.71841 5.84839 5.87435 5.98637 6.08285 6.11431 6.50080 6.58207 6.60017 6.65579 6.66490 6.79891 6.95059 7.04450 7.12425 7.38529 7.47015 7.78708 7.95385 8.21922 8.43136 8.70080 8.74892 8.91515 9.68668 10.08565 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.002328 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.518741 B =12027.167803 C =12217.427384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.141 3.859 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.553 5.553 13 C 0.336 3.664 14 N -0.661 5.661 15 C 0.498 3.502 16 O -0.473 6.473 17 C -0.105 4.105 18 C -0.054 4.054 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.053 4.053 23 C -0.115 4.115 24 C -0.178 4.178 25 C -0.171 4.171 26 C -0.097 4.097 27 C -0.239 4.239 28 H 0.280 0.720 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.408 0.592 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 -9.479 9.530 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.132 3.868 10 C -0.306 4.306 11 C -0.037 4.037 12 N -0.272 5.272 13 C 0.111 3.889 14 N -0.307 5.307 15 C 0.282 3.718 16 O -0.342 6.342 17 C -0.145 4.145 18 C -0.054 4.054 19 C -0.125 4.125 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.053 4.053 23 C -0.133 4.133 24 C -0.214 4.214 25 C -0.208 4.208 26 C -0.116 4.116 27 C -0.265 4.265 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.242 0.758 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.137 0.863 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.046 -10.915 9.460 18.808 hybrid contribution 0.642 2.132 -0.166 2.233 sum -11.404 -8.783 9.294 17.134 Atomic orbital electron populations 1.69751 1.07565 1.29053 1.35841 1.25953 0.94888 1.01460 0.92024 0.86155 0.80845 0.80527 0.78583 1.18361 1.19884 1.19696 1.19615 0.95858 0.89985 1.43063 0.90033 1.17603 0.90401 0.92294 0.86472 1.21929 1.04144 0.94413 1.10107 1.21755 0.90607 0.96521 0.94837 1.67185 1.14955 1.28118 1.16959 1.18215 0.86600 0.90875 0.93194 1.43474 1.23526 1.08995 1.54719 1.20491 0.86846 0.84115 0.80320 1.90799 1.62556 1.32522 1.48321 1.20736 0.96010 0.95066 1.02705 1.19251 0.97170 0.94666 0.94321 1.20984 0.98343 0.94994 0.98220 1.21018 1.00397 0.94588 0.97359 1.20946 0.99641 0.99611 0.94083 1.19010 0.98265 0.93671 0.94401 1.21028 1.00362 0.95409 0.96489 1.23058 1.03473 0.92116 1.02799 1.23016 0.96151 1.03824 0.97801 1.20738 0.99527 0.93882 0.97407 1.21677 1.00958 0.95566 1.08275 0.90887 0.87976 0.85934 0.75757 0.88260 0.88114 0.86219 0.86184 0.86344 0.86983 0.88368 0.88506 0.88585 0.88650 0.86284 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.45 10.70 55.55 0.59 -18.86 16 2 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 3 Si 0.91 17.91 29.57 -169.99 -5.03 12.88 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.66 9.14 -37.65 -0.34 -12.00 16 8 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 9 C 0.14 3.71 5.60 -106.55 -0.60 3.11 16 10 C -0.28 -6.98 9.90 -38.70 -0.38 -7.36 16 11 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 12 N -0.55 -14.28 7.89 -12.52 -0.10 -14.38 16 13 C 0.34 8.17 7.40 -154.71 -1.15 7.02 16 14 N -0.66 -12.81 5.39 -11.49 -0.06 -12.87 16 15 C 0.50 9.28 7.77 -10.98 -0.09 9.19 16 16 O -0.47 -10.96 14.33 5.56 0.08 -10.88 16 17 C -0.10 -1.36 5.83 -29.03 -0.17 -1.53 16 18 C -0.05 -0.74 4.37 -104.62 -0.46 -1.20 16 19 C -0.11 -1.43 9.70 -39.58 -0.38 -1.81 16 20 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 21 C -0.12 -1.47 9.30 -39.58 -0.37 -1.84 16 22 C -0.05 -0.66 5.61 -104.62 -0.59 -1.25 16 23 C -0.11 -1.17 6.04 -91.78 -0.55 -1.73 16 24 C -0.18 -1.51 9.86 -26.73 -0.26 -1.77 16 25 C -0.17 -1.40 10.16 -26.73 -0.27 -1.67 16 26 C -0.10 -1.31 9.39 -39.58 -0.37 -1.68 16 27 C -0.24 -6.07 8.61 -38.48 -0.33 -6.40 16 28 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 30 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 31 H 0.41 6.38 8.70 -40.82 -0.36 6.02 16 32 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.14 6.02 -52.49 -0.32 0.82 16 37 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.80 6.18 -51.93 -0.32 0.48 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.13 3.33 6.11 -52.48 -0.32 3.01 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -32.32 366.59 -11.49 -43.81 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.50 Total: 13.13 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -7.00 Total: -18.35 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.43 Total: -46.11 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.32 -11.49 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571528967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.467 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds