Wall clock time and date at job start Tue Mar 31 2020 13:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00103 * 2 1 4 4 H 1.48502 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47377 * 299.99712 * 3 2 1 6 6 H 1.48506 * 109.47201 * 59.99598 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99893 * 170.15629 * 7 2 1 9 9 C 1.41544 * 119.99830 * 350.16752 * 7 2 1 10 10 C 1.41173 * 120.99163 * 153.73117 * 9 7 2 11 11 C 1.37595 * 119.00940 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11023 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23373 * 359.65377 * 12 11 10 14 14 N 1.39467 * 119.58174 * 180.34224 * 13 12 11 15 15 C 1.34775 * 120.00029 * 5.65811 * 14 13 12 16 16 O 1.21279 * 120.00025 * 5.07897 * 15 14 13 17 17 C 1.50706 * 119.99986 * 185.07695 * 15 14 13 18 18 C 1.50701 * 109.46959 * 179.97438 * 17 15 14 19 19 C 1.38263 * 119.99694 * 269.72831 * 18 17 15 20 20 C 1.38215 * 119.99469 * 179.78960 * 19 18 17 21 21 C 1.38254 * 120.00298 * 0.46475 * 20 19 18 22 22 C 1.38219 * 120.00167 * 359.76347 * 21 20 19 23 23 C 1.50693 * 120.00463 * 180.02562 * 22 21 20 24 24 C 1.52999 * 117.49869 * 8.64862 * 23 22 21 25 25 C 1.52999 * 117.49699 * 300.02372 * 23 22 21 26 26 C 1.38208 * 120.00227 * 90.00078 * 18 17 15 27 27 C 1.38600 * 120.83629 * 0.63836 * 13 12 11 28 28 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.49570 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.44118 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99903 * 185.65656 * 14 13 12 32 32 H 1.08993 * 109.47260 * 299.99901 * 17 15 14 33 33 H 1.08998 * 109.47113 * 59.99988 * 17 15 14 34 34 H 1.07999 * 120.00375 * 359.97438 * 19 18 17 35 35 H 1.07996 * 119.99934 * 180.24687 * 20 19 18 36 36 H 1.07997 * 120.00548 * 179.79252 * 21 20 19 37 37 H 1.09000 * 115.55066 * 154.34999 * 23 22 21 38 38 H 1.09005 * 117.49586 * 359.97438 * 24 23 22 39 39 H 1.08999 * 117.50542 * 145.02539 * 24 23 22 40 40 H 1.09002 * 117.49622 * 214.97605 * 25 23 22 41 41 H 1.08994 * 117.50281 * 359.97438 * 25 23 22 42 42 H 1.08006 * 120.00034 * 359.97438 * 26 18 17 43 43 H 1.08003 * 120.59744 * 179.67474 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1594 9 6 1.3154 -2.4294 0.2104 10 6 1.8136 -3.6469 -0.3019 11 6 1.1073 -4.8056 -0.0741 12 7 -0.0215 -4.7930 0.6116 13 6 -0.5280 -3.6789 1.1184 14 7 -1.7205 -3.7306 1.8398 15 6 -2.2904 -4.9204 2.1153 16 8 -1.7211 -5.9490 1.8173 17 6 -3.6351 -4.9727 2.7937 18 6 -4.0454 -6.4101 2.9853 19 6 -4.7781 -7.0562 2.0069 20 6 -5.1507 -8.3758 2.1808 21 6 -4.7990 -9.0467 3.3373 22 6 -4.0705 -8.3995 4.3175 23 6 -3.6867 -9.1309 5.5778 24 6 -3.9524 -10.6368 5.6295 25 6 -4.8186 -9.6785 6.4495 26 6 -3.6942 -7.0808 4.1416 27 6 0.1091 -2.4616 0.9359 28 1 -0.4850 0.8401 -0.0004 29 1 2.7349 -3.6685 -0.8650 30 1 1.4818 -5.7408 -0.4632 31 1 -2.1397 -2.9101 2.1432 32 1 -3.5720 -4.4801 3.7639 33 1 -4.3742 -4.4637 2.1750 34 1 -5.0568 -6.5307 1.1054 35 1 -5.7196 -8.8817 1.4148 36 1 -5.0929 -10.0768 3.4747 37 1 -2.7961 -8.7591 6.0845 38 1 -4.4053 -11.0983 4.7519 39 1 -3.2367 -11.2560 6.1702 40 1 -4.6726 -9.6672 7.5296 41 1 -5.8410 -9.5093 6.1116 42 1 -3.1252 -6.5749 4.9077 43 1 -0.3100 -1.5548 1.3464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571528967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:34 Heat of formation + Delta-G solvation = 30.685724 kcal Electronic energy + Delta-G solvation = -25192.414970 eV Core-core repulsion = 21588.252840 eV Total energy + Delta-G solvation = -3604.162130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38508 -40.54247 -39.45385 -37.66555 -36.10915 -35.44287 -33.59954 -32.43551 -31.68435 -30.63074 -28.37259 -27.89624 -24.74417 -23.94333 -23.76742 -23.24462 -22.74805 -21.47879 -20.42822 -19.45502 -18.44909 -17.80081 -17.47016 -16.96087 -16.92704 -16.29893 -16.06041 -15.82064 -15.74971 -15.34146 -15.09747 -14.80655 -14.58788 -14.36507 -14.23549 -14.00938 -13.56813 -13.20482 -13.10002 -12.88142 -12.84464 -12.70335 -12.45383 -12.11157 -12.03494 -11.86949 -11.84613 -11.54401 -11.48087 -11.23072 -11.18869 -10.98575 -9.94063 -9.72975 -9.57308 -9.37127 -8.87230 -8.58196 -6.58549 0.39046 0.48832 0.74281 0.99034 1.41453 1.53540 1.56016 1.91030 2.18303 2.21007 2.72758 2.82640 3.17325 3.56131 3.72032 3.73359 3.85004 3.98089 4.01586 4.15068 4.18166 4.24579 4.33138 4.41013 4.52125 4.60664 4.74371 4.76943 4.80092 4.86061 4.91607 4.96934 5.09900 5.11552 5.15230 5.19682 5.24317 5.25797 5.47568 5.56930 5.65262 5.66951 5.70482 5.92502 6.11482 6.16084 6.49162 6.61980 6.79083 6.83728 7.34950 7.84006 8.29007 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.002328 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.518741 B =12027.167803 C =12217.427384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.483 4.483 8 H 0.082 0.918 9 C 0.111 3.889 10 C -0.296 4.296 11 C 0.111 3.889 12 N -0.579 5.579 13 C 0.333 3.667 14 N -0.654 5.654 15 C 0.497 3.503 16 O -0.521 6.521 17 C -0.090 4.090 18 C -0.072 4.072 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.061 4.061 23 C -0.139 4.139 24 C -0.173 4.173 25 C -0.157 4.157 26 C -0.117 4.117 27 C -0.257 4.257 28 H 0.292 0.708 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.424 0.576 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -9.118 10.368 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.180 4.180 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.514 4.514 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.320 4.320 11 C -0.043 4.043 12 N -0.299 5.299 13 C 0.107 3.893 14 N -0.302 5.302 15 C 0.284 3.716 16 O -0.394 6.394 17 C -0.129 4.129 18 C -0.073 4.073 19 C -0.145 4.145 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.061 4.061 23 C -0.157 4.157 24 C -0.210 4.210 25 C -0.193 4.193 26 C -0.135 4.135 27 C -0.282 4.282 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.165 0.835 31 H 0.262 0.738 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.138 -10.548 10.316 19.756 hybrid contribution 0.926 1.952 -0.419 2.200 sum -12.212 -8.596 9.897 17.916 Atomic orbital electron populations 1.69779 1.08854 1.30742 1.34909 1.26822 0.95743 1.04525 0.90933 0.85027 0.79193 0.75673 0.79032 1.18321 1.19086 1.18577 1.19885 0.96137 0.90919 1.44417 0.89985 1.18050 0.91306 0.93309 0.87102 1.22104 1.04906 0.94289 1.10731 1.22185 0.90330 0.97472 0.94328 1.67315 1.15744 1.28820 1.17986 1.18482 0.87758 0.90242 0.92792 1.43534 1.22167 1.10513 1.53960 1.21489 0.88152 0.82819 0.79159 1.90770 1.64237 1.34033 1.50349 1.20732 0.92634 0.95591 1.03991 1.19425 0.97860 0.95182 0.94796 1.21220 0.98943 0.95840 0.98478 1.21349 1.00195 0.94341 0.98041 1.21250 0.99238 1.00593 0.93754 1.19316 0.97824 0.93544 0.95368 1.21061 1.01446 0.96685 0.96487 1.23167 1.03584 0.91109 1.03121 1.23080 0.95559 1.02325 0.98383 1.20947 1.00147 0.94700 0.97730 1.21672 1.01425 0.95892 1.09248 0.89741 0.86669 0.83543 0.73813 0.85214 0.85369 0.85651 0.84029 0.84269 0.87338 0.87966 0.87420 0.87132 0.88421 0.85992 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.76 10.70 21.84 0.23 -39.52 16 2 C 0.04 1.71 5.31 85.29 0.45 2.17 16 3 Si 0.99 35.96 29.57 68.60 2.03 37.98 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 5 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 7 C -0.48 -25.15 9.14 23.52 0.21 -24.93 16 8 H 0.08 4.11 7.87 -2.91 -0.02 4.09 16 9 C 0.11 5.98 5.60 -21.12 -0.12 5.86 16 10 C -0.30 -15.01 9.90 22.84 0.23 -14.78 16 11 C 0.11 5.49 11.15 84.50 0.94 6.43 16 12 N -0.58 -30.47 7.89 -193.53 -1.53 -32.00 16 13 C 0.33 16.49 7.40 132.76 0.98 17.48 16 14 N -0.65 -25.33 5.39 -308.66 -1.66 -26.99 16 15 C 0.50 18.40 7.77 87.66 0.68 19.08 16 16 O -0.52 -24.57 14.33 -3.03 -0.04 -24.61 16 17 C -0.09 -2.20 5.83 29.10 0.17 -2.03 16 18 C -0.07 -1.95 4.37 -19.87 -0.09 -2.04 16 19 C -0.13 -3.29 9.70 22.27 0.22 -3.08 16 20 C -0.12 -2.80 10.05 22.27 0.22 -2.57 16 21 C -0.13 -2.91 9.30 22.27 0.21 -2.70 16 22 C -0.06 -1.46 5.61 -19.87 -0.11 -1.57 16 23 C -0.14 -2.70 6.04 -11.54 -0.07 -2.77 16 24 C -0.17 -2.62 9.86 30.60 0.30 -2.32 16 25 C -0.16 -2.25 10.16 30.60 0.31 -1.94 16 26 C -0.12 -3.11 9.39 22.27 0.21 -2.90 16 27 C -0.26 -13.32 8.61 22.98 0.20 -13.13 16 28 H 0.29 12.60 8.29 -92.71 -0.77 11.83 16 29 H 0.12 5.33 8.06 -2.91 -0.02 5.30 16 30 H 0.15 6.31 8.06 -2.91 -0.02 6.29 16 31 H 0.42 13.03 8.70 -92.71 -0.81 12.22 16 32 H 0.13 2.38 8.09 -2.39 -0.02 2.36 16 33 H 0.13 2.44 8.08 -2.39 -0.02 2.42 16 34 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.14 2.40 6.02 -2.91 -0.02 2.38 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.10 1.44 6.18 -2.38 -0.01 1.43 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.13 6.67 6.11 -2.91 -0.02 6.65 16 Total: -1.00 -71.18 366.59 4.22 -66.97 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: 0.24 Total: 43.93 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.95 Total: -25.75 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -2.96 Total: -98.52 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.04 Total: -24.61 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.98 kcal Total: -71.18 4.22 -66.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571528967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.651 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds