Wall clock time and date at job start Tue Mar 31 2020 12:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28443 * 125.19346 * 2 1 4 4 C 1.30861 * 110.92736 * 180.29662 * 3 2 1 5 5 C 1.39672 * 107.86060 * 359.71056 * 4 3 2 6 6 N 1.48014 * 127.32287 * 180.02562 * 5 4 3 7 7 O 1.21809 * 119.99833 * 359.95734 * 6 5 4 8 8 O 1.21801 * 120.00297 * 179.97438 * 6 5 4 9 9 C 1.36602 * 125.18571 * 179.80255 * 2 1 3 10 10 C 1.47161 * 126.88453 * 359.97438 * 9 2 1 11 11 O 1.21621 * 120.00242 * 99.53151 * 10 9 2 12 12 N 1.34777 * 120.00026 * 279.52990 * 10 9 2 13 13 C 1.46921 * 120.63305 * 174.85043 * 12 10 9 14 14 C 1.53186 * 108.89629 * 126.29623 * 13 12 10 15 15 C 1.53351 * 109.14750 * 54.58120 * 14 13 12 16 16 C 1.53002 * 109.40774 * 178.68566 * 15 14 13 17 17 C 1.50708 * 109.46982 * 295.11537 * 16 15 14 18 18 H 1.08007 * 119.99459 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00145 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99841 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99729 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47397 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46799 * 120.00948 * 21 19 17 24 24 H 1.48502 * 109.47136 * 240.00333 * 21 19 17 25 25 C 1.53041 * 109.60626 * 298.71152 * 15 14 13 26 26 C 1.46931 * 120.62960 * 354.82595 * 12 10 9 27 27 H 1.09001 * 109.47246 * 275.17925 * 1 2 3 28 28 H 1.08999 * 109.46568 * 35.17146 * 1 2 3 29 29 H 1.08993 * 109.47094 * 155.17297 * 1 2 3 30 30 H 1.08001 * 126.07050 * 179.73020 * 4 3 2 31 31 H 1.08997 * 109.58719 * 246.15710 * 13 12 10 32 32 H 1.08998 * 109.58600 * 6.43754 * 13 12 10 33 33 H 1.08995 * 109.50399 * 174.65954 * 14 13 12 34 34 H 1.09001 * 109.49875 * 294.75937 * 14 13 12 35 35 H 1.08999 * 109.43645 * 58.75933 * 15 14 13 36 36 H 1.08993 * 109.47480 * 55.11652 * 16 15 14 37 37 H 1.08996 * 109.47421 * 175.12218 * 16 15 14 38 38 H 0.97003 * 119.99513 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.49888 * 301.42367 * 25 15 14 40 40 H 1.09003 * 109.52559 * 181.34502 * 25 15 14 41 41 H 1.09000 * 109.58572 * 353.42008 * 26 12 10 42 42 H 1.09006 * 109.58592 * 113.70439 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4735 0.7272 -0.0063 5 6 3.5611 -0.6668 -0.0041 6 7 4.7921 -1.4886 -0.0088 7 8 5.8844 -0.9494 -0.0161 8 8 4.7130 -2.7041 -0.0056 9 6 2.2522 -1.1164 0.0038 10 6 1.7991 -2.5166 0.0092 11 8 1.7775 -3.1527 -1.0271 12 7 1.4082 -3.0940 1.1626 13 6 0.8479 -4.4521 1.1676 14 6 1.6352 -5.3100 2.1629 15 6 1.6327 -4.6209 3.5329 16 6 2.3899 -5.4889 4.5400 17 6 1.6499 -6.7862 4.7413 18 1 0.7316 -6.9730 4.2043 19 6 2.1456 -7.7350 5.6102 20 7 3.2641 -7.5077 6.2638 21 14 1.2287 -9.3433 5.8592 22 1 0.0080 -9.3532 5.0136 23 1 2.1061 -10.4780 5.4745 24 1 0.8434 -9.4775 7.2870 25 6 2.3151 -3.2555 3.4222 26 6 1.5349 -2.3773 2.4390 27 1 -0.3634 0.0928 1.0235 28 1 -0.3632 0.8401 -0.5920 29 1 -0.3633 -0.9326 -0.4315 30 1 4.3049 1.4165 -0.0119 31 1 -0.1996 -4.4141 1.4665 32 1 0.9277 -4.8840 0.1699 33 1 1.1694 -6.2919 2.2451 34 1 2.6619 -5.4219 1.8143 35 1 0.6048 -4.4868 3.8696 36 1 3.3905 -5.6964 4.1609 37 1 2.4638 -4.9615 5.4910 38 1 3.6126 -8.1751 6.8754 39 1 3.3355 -3.3868 3.0619 40 1 2.3339 -2.7771 4.4015 41 1 2.0703 -1.4411 2.2809 42 1 0.5433 -2.1680 2.8405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573252261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:44 Heat of formation + Delta-G solvation = 39.359476 kcal Electronic energy + Delta-G solvation = -28152.060425 eV Core-core repulsion = 24137.425154 eV Total energy + Delta-G solvation = -4014.635271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.70748 -41.80172 -40.17751 -37.61628 -36.49895 -34.47814 -34.22600 -32.52129 -31.97316 -30.87513 -28.74392 -28.08313 -26.47686 -25.03977 -23.78765 -22.71006 -22.31115 -21.64376 -20.37947 -19.51681 -18.80988 -18.33173 -17.97508 -17.64288 -16.94973 -16.34477 -16.29248 -16.05175 -15.17853 -14.81099 -14.56853 -14.02850 -13.88262 -13.64042 -13.57711 -13.38677 -13.19535 -13.03932 -12.37641 -12.03774 -11.97659 -11.58303 -11.28051 -11.21593 -11.16799 -11.10404 -10.86855 -10.77906 -10.59708 -10.46176 -10.29855 -10.21568 -10.04400 -9.72781 -9.40880 -9.03301 -8.69922 -8.37859 -6.02170 -4.04550 -0.11622 0.88864 1.03141 1.63342 1.86339 2.09903 2.62254 3.29118 3.37375 3.39575 3.59230 3.65807 4.09083 4.34576 4.37680 4.43198 4.52676 4.69182 4.71634 5.08786 5.17540 5.21507 5.32016 5.33975 5.45380 5.61312 5.66202 5.77493 5.83883 6.09440 6.20115 6.26785 6.37293 6.47538 6.84700 6.93495 6.97123 7.02342 7.03640 7.62151 7.62354 7.63381 7.76647 7.96683 8.38051 9.01806 9.59671 11.09113 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.003366 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.187989 B = 8315.906917 C = 8860.046772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.254 5.254 3 N -0.266 5.266 4 C 0.083 3.917 5 C -0.132 4.132 6 N 0.063 4.937 7 O -0.152 6.152 8 O -0.143 6.143 9 C 0.082 3.918 10 C 0.581 3.419 11 O -0.504 6.504 12 N -0.582 5.582 13 C 0.110 3.890 14 C -0.120 4.120 15 C -0.079 4.079 16 C 0.027 3.973 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.130 4.130 26 C 0.106 3.894 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.214 0.786 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.018 0.982 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 18.395 -11.616 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.039 5.039 3 N -0.094 5.094 4 C -0.097 4.097 5 C -0.228 4.228 6 N 0.584 4.416 7 O -0.367 6.367 8 O -0.360 6.360 9 C -0.054 4.054 10 C 0.363 3.637 11 O -0.377 6.377 12 N -0.315 5.315 13 C -0.011 4.011 14 C -0.158 4.158 15 C -0.098 4.098 16 C -0.010 4.010 17 C -0.555 4.555 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.168 4.168 26 C -0.017 4.017 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.230 0.770 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.327 19.284 -12.043 24.212 hybrid contribution 0.533 -1.603 0.349 1.725 sum -7.794 17.680 -11.694 22.585 Atomic orbital electron populations 1.22553 0.70576 1.06689 1.06125 1.45857 1.08620 1.01097 1.48366 1.73510 1.02433 1.12539 1.20949 1.23645 0.94587 0.91465 1.00037 1.21446 0.84925 0.92656 1.23803 1.42284 1.00738 1.00921 0.97692 1.94542 1.12811 1.75594 1.53763 1.94687 1.93659 0.94501 1.53116 1.21543 0.90090 0.91193 1.02621 1.16761 0.78848 0.83155 0.84961 1.90898 1.52668 1.62312 1.31818 1.48137 1.60176 1.17414 1.05740 1.21991 0.97031 0.79688 1.02386 1.21989 1.00785 0.99055 0.93975 1.21251 0.99585 0.92834 0.96088 1.19124 0.95429 0.93621 0.92794 1.21240 1.08549 1.01240 1.24521 0.92526 1.25017 0.94991 0.98469 0.95929 1.69973 1.20350 1.34993 1.27985 0.86590 0.79892 0.83978 0.77852 1.19766 1.21024 1.21130 1.22039 0.99786 0.97140 0.97850 1.21918 1.01174 0.94807 0.83798 0.87959 0.86936 0.87804 0.76954 0.90963 0.89022 0.89188 0.91536 0.92246 0.96360 0.96620 0.93050 0.91485 0.90721 0.91854 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.22 59.85 0.67 1.04 16 2 N -0.25 -2.33 3.75 -63.88 -0.24 -2.56 16 3 N -0.27 -2.52 11.90 30.59 0.36 -2.15 16 4 C 0.08 0.81 11.83 -17.43 -0.21 0.61 16 5 C -0.13 -1.72 7.29 -79.35 -0.58 -2.30 16 6 N 0.06 0.99 4.45 34.25 0.15 1.14 16 7 O -0.15 -2.32 19.10 -29.46 -0.56 -2.89 16 8 O -0.14 -2.61 18.08 -29.46 -0.53 -3.14 16 9 C 0.08 1.01 4.66 -82.06 -0.38 0.63 16 10 C 0.58 8.28 5.72 -12.64 -0.07 8.21 16 11 O -0.50 -8.70 16.52 5.26 0.09 -8.61 16 12 N -0.58 -7.74 2.97 -174.14 -0.52 -8.26 16 13 C 0.11 1.51 6.43 -3.72 -0.02 1.49 16 14 C -0.12 -2.06 5.21 -26.45 -0.14 -2.20 16 15 C -0.08 -1.44 2.10 -90.42 -0.19 -1.63 16 16 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 17 C -0.52 -13.73 8.39 -34.44 -0.29 -14.02 16 18 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.13 -2.00 5.36 -26.61 -0.14 -2.15 16 26 C 0.11 1.27 6.32 -3.71 -0.02 1.24 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.47 7.65 -51.93 -0.40 0.07 16 30 H 0.21 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16 33 H 0.09 1.63 6.92 -51.93 -0.36 1.27 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.72 6.38 -51.93 -0.33 0.39 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -33.88 358.17 -7.34 -41.23 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.61 Total: -3.54 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.60 Total: -7.05 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.50 Total: -37.44 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.01 Total: -14.64 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.88 -7.34 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573252261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.585 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds