Wall clock time and date at job start Tue Mar 31 2020 12:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28443 * 125.19346 * 2 1 4 4 C 1.30861 * 110.92736 * 180.29662 * 3 2 1 5 5 C 1.39672 * 107.86060 * 359.71056 * 4 3 2 6 6 N 1.48014 * 127.32287 * 180.02562 * 5 4 3 7 7 O 1.21809 * 119.99833 * 359.95734 * 6 5 4 8 8 O 1.21801 * 120.00297 * 179.97438 * 6 5 4 9 9 C 1.36602 * 125.18571 * 179.80255 * 2 1 3 10 10 C 1.47161 * 126.88453 * 359.97438 * 9 2 1 11 11 O 1.21621 * 120.00242 * 99.53151 * 10 9 2 12 12 N 1.34777 * 120.00026 * 279.52990 * 10 9 2 13 13 C 1.46921 * 120.63305 * 174.85043 * 12 10 9 14 14 C 1.53186 * 108.89629 * 126.29623 * 13 12 10 15 15 C 1.53351 * 109.14750 * 54.58120 * 14 13 12 16 16 C 1.53002 * 109.40774 * 178.68566 * 15 14 13 17 17 C 1.50708 * 109.46982 * 295.11537 * 16 15 14 18 18 H 1.08007 * 119.99459 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00145 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99841 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99729 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47397 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46799 * 120.00948 * 21 19 17 24 24 H 1.48502 * 109.47136 * 240.00333 * 21 19 17 25 25 C 1.53041 * 109.60626 * 298.71152 * 15 14 13 26 26 C 1.46931 * 120.62960 * 354.82595 * 12 10 9 27 27 H 1.09001 * 109.47246 * 275.17925 * 1 2 3 28 28 H 1.08999 * 109.46568 * 35.17146 * 1 2 3 29 29 H 1.08993 * 109.47094 * 155.17297 * 1 2 3 30 30 H 1.08001 * 126.07050 * 179.73020 * 4 3 2 31 31 H 1.08997 * 109.58719 * 246.15710 * 13 12 10 32 32 H 1.08998 * 109.58600 * 6.43754 * 13 12 10 33 33 H 1.08995 * 109.50399 * 174.65954 * 14 13 12 34 34 H 1.09001 * 109.49875 * 294.75937 * 14 13 12 35 35 H 1.08999 * 109.43645 * 58.75933 * 15 14 13 36 36 H 1.08993 * 109.47480 * 55.11652 * 16 15 14 37 37 H 1.08996 * 109.47421 * 175.12218 * 16 15 14 38 38 H 0.97003 * 119.99513 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.49888 * 301.42367 * 25 15 14 40 40 H 1.09003 * 109.52559 * 181.34502 * 25 15 14 41 41 H 1.09000 * 109.58572 * 353.42008 * 26 12 10 42 42 H 1.09006 * 109.58592 * 113.70439 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4735 0.7272 -0.0063 5 6 3.5611 -0.6668 -0.0041 6 7 4.7921 -1.4886 -0.0088 7 8 5.8844 -0.9494 -0.0161 8 8 4.7130 -2.7041 -0.0056 9 6 2.2522 -1.1164 0.0038 10 6 1.7991 -2.5166 0.0092 11 8 1.7775 -3.1527 -1.0271 12 7 1.4082 -3.0940 1.1626 13 6 0.8479 -4.4521 1.1676 14 6 1.6352 -5.3100 2.1629 15 6 1.6327 -4.6209 3.5329 16 6 2.3899 -5.4889 4.5400 17 6 1.6499 -6.7862 4.7413 18 1 0.7316 -6.9730 4.2043 19 6 2.1456 -7.7350 5.6102 20 7 3.2641 -7.5077 6.2638 21 14 1.2287 -9.3433 5.8592 22 1 0.0080 -9.3532 5.0136 23 1 2.1061 -10.4780 5.4745 24 1 0.8434 -9.4775 7.2870 25 6 2.3151 -3.2555 3.4222 26 6 1.5349 -2.3773 2.4390 27 1 -0.3634 0.0928 1.0235 28 1 -0.3632 0.8401 -0.5920 29 1 -0.3633 -0.9326 -0.4315 30 1 4.3049 1.4165 -0.0119 31 1 -0.1996 -4.4141 1.4665 32 1 0.9277 -4.8840 0.1699 33 1 1.1694 -6.2919 2.2451 34 1 2.6619 -5.4219 1.8143 35 1 0.6048 -4.4868 3.8696 36 1 3.3905 -5.6964 4.1609 37 1 2.4638 -4.9615 5.4910 38 1 3.6126 -8.1751 6.8754 39 1 3.3355 -3.3868 3.0619 40 1 2.3339 -2.7771 4.4015 41 1 2.0703 -1.4411 2.2809 42 1 0.5433 -2.1680 2.8405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573252261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:44 Heat of formation + Delta-G solvation = 17.589659 kcal Electronic energy + Delta-G solvation = -28153.004435 eV Core-core repulsion = 24137.425154 eV Total energy + Delta-G solvation = -4015.579281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.54508 -42.94306 -41.31594 -38.92638 -37.70153 -35.87713 -35.11196 -34.16955 -33.16364 -32.04432 -30.09316 -29.19089 -27.39582 -26.60096 -25.03897 -24.06553 -23.25769 -22.95079 -21.52712 -20.74579 -19.95315 -19.46228 -18.98439 -18.69864 -18.37809 -17.90704 -17.22600 -16.98387 -16.53804 -16.18834 -15.68488 -15.37135 -15.04292 -14.77084 -14.62099 -14.36302 -14.07550 -13.97029 -13.92759 -13.57582 -13.07107 -12.95136 -12.80972 -12.77006 -12.56318 -12.37804 -12.36427 -12.32246 -12.21862 -11.88090 -11.66914 -11.38504 -11.11497 -11.10055 -10.92139 -10.80805 -10.52654 -9.91997 -8.15953 -6.25378 -1.22653 -0.03389 0.09293 0.69301 0.96409 1.09303 1.41104 1.42759 1.54343 1.69977 2.43177 2.69173 2.81588 3.18398 3.27061 3.51140 3.66539 3.91864 3.95111 4.08467 4.10402 4.15123 4.29440 4.35815 4.46438 4.49892 4.53028 4.66823 4.78127 4.82278 4.94760 4.99282 5.11245 5.16805 5.30081 5.35018 5.44682 5.54878 5.78575 5.89442 5.94551 6.17377 6.28516 6.38765 6.54431 6.92075 7.43717 8.96369 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.003366 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.187989 B = 8315.906917 C = 8860.046772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.232 5.232 3 N -0.255 5.255 4 C 0.094 3.906 5 C -0.152 4.152 6 N 0.065 4.935 7 O -0.126 6.126 8 O -0.226 6.226 9 C 0.068 3.932 10 C 0.585 3.415 11 O -0.542 6.542 12 N -0.581 5.581 13 C 0.119 3.881 14 C -0.115 4.115 15 C -0.069 4.069 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.070 0.930 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.959 3.041 22 H -0.256 1.256 23 H -0.286 1.286 24 H -0.281 1.281 25 C -0.126 4.126 26 C 0.114 3.886 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.106 0.894 30 H 0.245 0.755 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.079 0.921 36 H -0.023 1.023 37 H -0.009 1.009 38 H 0.260 0.740 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 20.888 -12.013 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.017 5.017 3 N -0.084 5.084 4 C -0.084 4.084 5 C -0.250 4.250 6 N 0.580 4.420 7 O -0.352 6.352 8 O -0.423 6.423 9 C -0.070 4.070 10 C 0.369 3.631 11 O -0.418 6.418 12 N -0.312 5.312 13 C -0.002 4.002 14 C -0.153 4.153 15 C -0.087 4.087 16 C -0.006 4.006 17 C -0.563 4.563 18 H 0.088 0.912 19 C -0.201 4.201 20 N -0.579 5.579 21 Si 0.784 3.216 22 H -0.179 1.179 23 H -0.213 1.213 24 H -0.207 1.207 25 C -0.164 4.164 26 C -0.008 4.008 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.125 0.875 30 H 0.261 0.739 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.097 0.903 36 H -0.004 1.004 37 H 0.009 0.991 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.446 21.660 -12.435 27.474 hybrid contribution 1.518 -2.189 0.482 2.707 sum -9.928 19.472 -11.953 24.912 Atomic orbital electron populations 1.23115 0.67770 1.08044 1.08522 1.46352 1.09922 0.99774 1.45665 1.73590 1.02218 1.12049 1.20590 1.24188 0.95608 0.90188 0.98451 1.21621 0.83788 0.93575 1.26026 1.42616 1.01680 1.00831 0.96879 1.94481 1.14084 1.75196 1.51412 1.94707 1.94145 0.95961 1.57490 1.21254 0.90485 0.91103 1.04203 1.16924 0.77842 0.83855 0.84507 1.90874 1.54199 1.63527 1.33190 1.48169 1.59706 1.17195 1.06141 1.21874 0.98083 0.79387 1.00821 1.21848 0.99490 0.99471 0.94487 1.21079 0.99699 0.93250 0.94712 1.19025 0.94144 0.94229 0.93210 1.21707 1.08819 1.01914 1.23839 0.91223 1.25968 0.95844 1.02424 0.95885 1.70125 1.22298 1.36385 1.29094 0.85480 0.78962 0.79090 0.78021 1.17916 1.21253 1.20687 1.21927 0.98498 0.96453 0.99548 1.21973 1.02843 0.93914 0.82032 0.85152 0.84402 0.87542 0.73895 0.87285 0.89659 0.90289 0.94816 0.90289 1.00440 0.99055 0.93111 0.94534 0.89772 0.90614 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 11.22 127.77 1.43 1.74 16 2 N -0.23 -3.43 3.75 -356.02 -1.33 -4.77 16 3 N -0.26 -3.86 11.90 -57.14 -0.68 -4.54 16 4 C 0.09 1.57 11.83 85.18 1.01 2.58 16 5 C -0.15 -3.80 7.29 36.76 0.27 -3.53 16 6 N 0.07 2.10 4.45 -45.55 -0.20 1.90 16 7 O -0.13 -3.80 19.10 18.87 0.36 -3.44 16 8 O -0.23 -8.84 18.08 18.88 0.34 -8.50 16 9 C 0.07 1.56 4.66 40.79 0.19 1.75 16 10 C 0.59 16.29 5.72 86.59 0.50 16.79 16 11 O -0.54 -18.99 16.52 -4.10 -0.07 -19.05 16 12 N -0.58 -14.64 2.97 -823.11 -2.45 -17.09 16 13 C 0.12 3.14 6.43 86.36 0.56 3.70 16 14 C -0.11 -4.02 5.21 30.77 0.16 -3.86 16 15 C -0.07 -2.52 2.10 -10.66 -0.02 -2.54 16 16 C 0.03 1.57 4.45 29.85 0.13 1.70 16 17 C -0.52 -28.35 8.39 25.60 0.21 -28.13 16 18 H 0.07 3.50 7.06 -2.91 -0.02 3.48 16 19 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 20 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 21 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.13 -3.87 5.36 30.67 0.16 -3.70 16 26 C 0.11 2.45 6.32 86.36 0.55 2.99 16 27 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.11 0.56 7.65 -2.39 -0.02 0.54 16 30 H 0.24 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.41 6.99 -2.39 -0.02 2.39 16 33 H 0.08 2.91 6.92 -2.39 -0.02 2.89 16 34 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 36 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.08 1.50 6.38 -2.39 -0.02 1.48 16 42 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -79.43 358.17 4.93 -74.50 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.05 Total: 2.66 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 5.61 Total: -10.30 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -4.38 Total: -81.46 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: 0.63 Total: -31.00 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -79.43 4.93 -74.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573252261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.090 kcal (2) G-P(sol) polarization free energy of solvation -79.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds