Wall clock time and date at job start Tue Mar 31 2020 13:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48501 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46890 * 299.99521 * 3 2 1 6 6 H 1.48493 * 109.47699 * 59.99422 * 3 2 1 7 7 C 1.37878 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99443 * 186.12679 * 7 2 1 9 9 C 1.50695 * 120.00219 * 6.12485 * 7 2 1 10 10 H 1.09002 * 109.46966 * 25.84382 * 9 7 2 11 11 C 1.53001 * 109.47059 * 145.83961 * 9 7 2 12 12 C 1.50689 * 109.47291 * 294.99981 * 11 9 7 13 13 O 1.21281 * 120.00159 * 0.02562 * 12 11 9 14 14 N 1.34780 * 119.99943 * 179.97438 * 12 11 9 15 15 C 1.46668 * 126.56611 * 180.02562 * 14 12 11 16 16 C 1.50634 * 107.63912 * 179.97438 * 15 14 12 17 17 C 1.38688 * 131.50968 * 179.97438 * 16 15 14 18 18 C 1.38621 * 118.44919 * 180.02562 * 17 16 15 19 19 C 1.38225 * 119.01375 * 359.97438 * 18 17 16 20 20 N 1.31729 * 120.83631 * 0.02562 * 19 18 17 21 21 C 1.32246 * 121.90713 * 0.02562 * 20 19 18 22 22 C 1.46623 * 126.56733 * 0.02562 * 14 12 11 23 23 C 1.50702 * 109.47030 * 265.84462 * 9 7 2 24 24 C 1.38230 * 119.99896 * 303.46465 * 23 9 7 25 25 C 1.38236 * 119.99919 * 179.79239 * 24 23 9 26 26 C 1.38240 * 119.99780 * 0.44029 * 25 24 23 27 27 C 1.38229 * 120.00317 * 359.81593 * 26 25 24 28 28 C 1.38237 * 120.00026 * 123.74420 * 23 9 7 29 29 H 0.97003 * 120.00334 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46661 * 175.00036 * 11 9 7 31 31 H 1.09005 * 109.46957 * 55.00702 * 11 9 7 32 32 H 1.08998 * 109.81737 * 60.47416 * 15 14 12 33 33 H 1.08995 * 109.88985 * 299.56776 * 15 14 12 34 34 H 1.08001 * 120.77110 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.49073 * 180.27873 * 18 17 16 36 36 H 1.08006 * 119.58064 * 179.97438 * 19 18 17 37 37 H 1.08990 * 109.80485 * 60.43707 * 22 14 12 38 38 H 1.09000 * 109.80249 * 299.55908 * 22 14 12 39 39 H 1.08004 * 120.00237 * 0.02562 * 24 23 9 40 40 H 1.08004 * 120.00017 * 180.27708 * 25 24 23 41 41 H 1.08000 * 119.99378 * 179.83298 * 26 25 24 42 42 H 1.07993 * 120.00567 * 179.97438 * 27 26 25 43 43 H 1.07997 * 119.99802 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0798 -1.1966 0.1004 9 6 1.2575 -2.4955 -0.1381 10 1 0.3201 -2.3218 -0.6666 11 6 2.1103 -3.4915 -0.9265 12 6 2.2984 -2.9879 -2.3342 13 8 1.7999 -1.9357 -2.6735 14 7 3.0215 -3.7064 -3.2160 15 6 3.2956 -3.3548 -4.6132 16 6 4.1414 -4.4530 -5.2028 17 6 4.6753 -4.6214 -6.4717 18 6 5.4276 -5.7576 -6.7261 19 6 5.6180 -6.6767 -5.7114 20 7 5.0951 -6.4830 -4.5180 21 6 4.3711 -5.4125 -4.2375 22 6 3.6847 -4.9891 -2.9621 23 6 0.9664 -3.0559 1.2302 24 6 2.0018 -3.2906 2.1155 25 6 1.7344 -3.8006 3.3722 26 6 0.4325 -4.0844 3.7403 27 6 -0.6023 -3.8547 2.8531 28 6 -0.3354 -3.3406 1.5980 29 1 -0.4851 0.8400 -0.0004 30 1 1.6093 -4.4593 -0.9507 31 1 3.0827 -3.5978 -0.4455 32 1 3.8356 -2.4090 -4.6572 33 1 2.3595 -3.2719 -5.1653 34 1 4.5088 -3.8845 -7.2434 35 1 5.8626 -5.9197 -7.7013 36 1 6.2023 -7.5653 -5.8998 37 1 2.9454 -5.7366 -2.6745 38 1 4.4218 -4.8729 -2.1675 39 1 3.0193 -3.0720 1.8267 40 1 2.5429 -3.9798 4.0655 41 1 0.2240 -4.4854 4.7211 42 1 -1.6194 -4.0768 3.1405 43 1 -1.1438 -3.1610 0.9048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582900583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:28 Heat of formation + Delta-G solvation = 40.032534 kcal Electronic energy + Delta-G solvation = -26089.229719 eV Core-core repulsion = 22485.472897 eV Total energy + Delta-G solvation = -3603.756822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08381 -39.06062 -38.20577 -36.29606 -33.99154 -32.97455 -31.60794 -31.12231 -29.99075 -29.02576 -28.13487 -26.31637 -24.97170 -22.81927 -22.31768 -22.00919 -21.57576 -19.91880 -18.81819 -17.02004 -16.64455 -16.48490 -16.13741 -15.99784 -15.87517 -15.35204 -14.55049 -14.19856 -14.02941 -13.99522 -13.74662 -13.37081 -13.15445 -12.92942 -12.90169 -12.59908 -12.50965 -12.31183 -11.93018 -11.87538 -11.68640 -11.60134 -10.88519 -10.72704 -10.54865 -10.24277 -10.06214 -9.99237 -9.57881 -9.45569 -9.30895 -9.15049 -8.96247 -8.35943 -8.20903 -8.02661 -7.59802 -5.93898 -3.93539 0.80531 1.00471 2.30644 2.35827 3.08188 3.36671 3.39954 3.44968 3.47069 3.48875 3.67754 4.23988 4.52031 4.59174 4.75491 4.76789 4.84445 5.08485 5.20686 5.40170 5.42309 5.50205 5.57946 5.58501 5.68029 5.71161 5.74664 5.83896 5.85852 5.93821 6.07674 6.17643 6.28029 6.38928 6.42689 6.46817 6.54145 6.80105 6.92112 7.05656 7.32894 7.44809 7.52931 7.70009 7.85607 7.88690 7.96046 8.06135 8.37528 8.89693 9.06752 9.68805 11.16278 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.003680 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.542138 B = 7607.267194 C = 9186.002453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.494 4.494 8 H 0.051 0.949 9 C 0.079 3.921 10 H 0.073 0.927 11 C -0.116 4.116 12 C 0.540 3.460 13 O -0.483 6.483 14 N -0.633 5.633 15 C 0.153 3.847 16 C -0.153 4.153 17 C -0.054 4.054 18 C -0.173 4.173 19 C 0.104 3.896 20 N -0.471 5.471 21 C 0.116 3.884 22 C 0.160 3.840 23 C -0.021 4.021 24 C -0.115 4.115 25 C -0.131 4.131 26 C -0.155 4.155 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.259 0.741 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -13.076 -8.702 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.124 4.124 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.531 4.531 8 H 0.070 0.930 9 C 0.060 3.940 10 H 0.091 0.909 11 C -0.156 4.156 12 C 0.330 3.670 13 O -0.352 6.352 14 N -0.373 5.373 15 C 0.030 3.970 16 C -0.155 4.155 17 C -0.080 4.080 18 C -0.192 4.192 19 C -0.054 4.054 20 N -0.180 5.180 21 C -0.022 4.022 22 C 0.035 3.965 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.173 4.173 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.177 0.823 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.523 -12.870 -8.134 16.982 hybrid contribution 0.487 1.595 -0.722 1.817 sum 8.009 -11.275 -8.855 16.423 Atomic orbital electron populations 1.69919 1.05933 1.26340 1.49546 1.24804 0.94647 0.98844 0.94122 0.86637 0.80201 0.84379 0.77297 1.19951 1.21025 1.21351 1.20728 0.92501 0.89570 1.50323 0.93029 1.17863 0.97526 0.91397 0.87239 0.90912 1.21824 1.02595 1.00154 0.91067 1.20673 0.76495 0.83495 0.86345 1.90793 1.45781 1.20840 1.77808 1.48369 1.55117 1.22496 1.11320 1.19996 0.98189 0.95425 0.83436 1.21352 1.00233 0.98581 0.95368 1.20958 0.94620 0.97317 0.95144 1.22080 1.00605 0.95367 1.01188 1.22680 0.96451 0.98714 0.87530 1.66804 1.08411 1.20766 1.22004 1.21520 0.94342 0.90235 0.96062 1.19982 0.96518 0.86859 0.93096 1.20691 0.91987 0.90520 0.98952 1.20946 0.99394 0.99526 0.93447 1.20976 0.96072 1.01236 0.96677 1.20796 0.93350 1.04206 0.98983 1.20980 0.97981 1.00983 0.94681 1.21085 0.97066 0.99309 0.96192 0.93161 0.91318 0.90206 0.89994 0.90045 0.84500 0.84265 0.82257 0.89162 0.89124 0.86889 0.87659 0.87817 0.87646 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 12.87 55.43 0.71 -25.01 16 2 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 7 C -0.49 -13.15 6.37 -34.44 -0.22 -13.37 16 8 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 9 C 0.08 1.86 1.67 -92.92 -0.16 1.70 16 10 H 0.07 1.97 6.98 -51.93 -0.36 1.61 16 11 C -0.12 -2.23 4.20 -27.89 -0.12 -2.34 16 12 C 0.54 10.81 7.62 -10.99 -0.08 10.73 16 13 O -0.48 -11.96 15.36 5.56 0.09 -11.87 16 14 N -0.63 -10.09 3.34 -176.13 -0.59 -10.68 16 15 C 0.15 2.14 6.91 -5.13 -0.04 2.10 16 16 C -0.15 -1.84 6.24 -104.57 -0.65 -2.49 16 17 C -0.05 -0.51 10.17 -39.27 -0.40 -0.91 16 18 C -0.17 -1.37 10.12 -39.44 -0.40 -1.77 16 19 C 0.10 0.96 11.18 -17.60 -0.20 0.76 16 20 N -0.47 -5.77 10.36 -9.40 -0.10 -5.86 16 21 C 0.12 1.49 7.40 -82.40 -0.61 0.88 16 22 C 0.16 2.08 6.54 -5.03 -0.03 2.05 16 23 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 24 C -0.12 -2.30 8.86 -39.59 -0.35 -2.66 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 26 C -0.16 -2.70 10.05 -39.58 -0.40 -3.09 16 27 C -0.13 -2.36 10.05 -39.59 -0.40 -2.76 16 28 C -0.12 -2.49 9.67 -39.58 -0.38 -2.87 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.41 7.78 -51.93 -0.40 1.01 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.11 2.18 7.76 -52.48 -0.41 1.77 16 40 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 41 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.11 2.40 7.95 -52.49 -0.42 1.99 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -33.02 365.74 -10.61 -43.63 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.79 Total: 2.70 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -5.42 Total: -15.61 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.03 Total: -41.55 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.02 -10.61 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582900583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.663 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds