Wall clock time and date at job start Tue Mar 31 2020 13:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48501 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46890 * 299.99521 * 3 2 1 6 6 H 1.48493 * 109.47699 * 59.99422 * 3 2 1 7 7 C 1.37878 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99443 * 186.12679 * 7 2 1 9 9 C 1.50695 * 120.00219 * 6.12485 * 7 2 1 10 10 H 1.09002 * 109.46966 * 25.84382 * 9 7 2 11 11 C 1.53001 * 109.47059 * 145.83961 * 9 7 2 12 12 C 1.50689 * 109.47291 * 294.99981 * 11 9 7 13 13 O 1.21281 * 120.00159 * 0.02562 * 12 11 9 14 14 N 1.34780 * 119.99943 * 179.97438 * 12 11 9 15 15 C 1.46668 * 126.56611 * 180.02562 * 14 12 11 16 16 C 1.50634 * 107.63912 * 179.97438 * 15 14 12 17 17 C 1.38688 * 131.50968 * 179.97438 * 16 15 14 18 18 C 1.38621 * 118.44919 * 180.02562 * 17 16 15 19 19 C 1.38225 * 119.01375 * 359.97438 * 18 17 16 20 20 N 1.31729 * 120.83631 * 0.02562 * 19 18 17 21 21 C 1.32246 * 121.90713 * 0.02562 * 20 19 18 22 22 C 1.46623 * 126.56733 * 0.02562 * 14 12 11 23 23 C 1.50702 * 109.47030 * 265.84462 * 9 7 2 24 24 C 1.38230 * 119.99896 * 303.46465 * 23 9 7 25 25 C 1.38236 * 119.99919 * 179.79239 * 24 23 9 26 26 C 1.38240 * 119.99780 * 0.44029 * 25 24 23 27 27 C 1.38229 * 120.00317 * 359.81593 * 26 25 24 28 28 C 1.38237 * 120.00026 * 123.74420 * 23 9 7 29 29 H 0.97003 * 120.00334 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46661 * 175.00036 * 11 9 7 31 31 H 1.09005 * 109.46957 * 55.00702 * 11 9 7 32 32 H 1.08998 * 109.81737 * 60.47416 * 15 14 12 33 33 H 1.08995 * 109.88985 * 299.56776 * 15 14 12 34 34 H 1.08001 * 120.77110 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.49073 * 180.27873 * 18 17 16 36 36 H 1.08006 * 119.58064 * 179.97438 * 19 18 17 37 37 H 1.08990 * 109.80485 * 60.43707 * 22 14 12 38 38 H 1.09000 * 109.80249 * 299.55908 * 22 14 12 39 39 H 1.08004 * 120.00237 * 0.02562 * 24 23 9 40 40 H 1.08004 * 120.00017 * 180.27708 * 25 24 23 41 41 H 1.08000 * 119.99378 * 179.83298 * 26 25 24 42 42 H 1.07993 * 120.00567 * 179.97438 * 27 26 25 43 43 H 1.07997 * 119.99802 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0798 -1.1966 0.1004 9 6 1.2575 -2.4955 -0.1381 10 1 0.3201 -2.3218 -0.6666 11 6 2.1103 -3.4915 -0.9265 12 6 2.2984 -2.9879 -2.3342 13 8 1.7999 -1.9357 -2.6735 14 7 3.0215 -3.7064 -3.2160 15 6 3.2956 -3.3548 -4.6132 16 6 4.1414 -4.4530 -5.2028 17 6 4.6753 -4.6214 -6.4717 18 6 5.4276 -5.7576 -6.7261 19 6 5.6180 -6.6767 -5.7114 20 7 5.0951 -6.4830 -4.5180 21 6 4.3711 -5.4125 -4.2375 22 6 3.6847 -4.9891 -2.9621 23 6 0.9664 -3.0559 1.2302 24 6 2.0018 -3.2906 2.1155 25 6 1.7344 -3.8006 3.3722 26 6 0.4325 -4.0844 3.7403 27 6 -0.6023 -3.8547 2.8531 28 6 -0.3354 -3.3406 1.5980 29 1 -0.4851 0.8400 -0.0004 30 1 1.6093 -4.4593 -0.9507 31 1 3.0827 -3.5978 -0.4455 32 1 3.8356 -2.4090 -4.6572 33 1 2.3595 -3.2719 -5.1653 34 1 4.5088 -3.8845 -7.2434 35 1 5.8626 -5.9197 -7.7013 36 1 6.2023 -7.5653 -5.8998 37 1 2.9454 -5.7366 -2.6745 38 1 4.4218 -4.8729 -2.1675 39 1 3.0193 -3.0720 1.8267 40 1 2.5429 -3.9798 4.0655 41 1 0.2240 -4.4854 4.7211 42 1 -1.6194 -4.0768 3.1405 43 1 -1.1438 -3.1610 0.9048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582900583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:27 Heat of formation + Delta-G solvation = 21.229032 kcal Electronic energy + Delta-G solvation = -26090.045100 eV Core-core repulsion = 22485.472897 eV Total energy + Delta-G solvation = -3604.572203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04459 -40.49901 -39.67386 -37.56091 -35.79035 -33.83342 -33.42104 -32.31785 -31.48381 -30.41307 -29.27165 -27.82294 -26.47835 -24.37982 -23.17483 -23.16664 -22.93538 -21.46370 -20.30273 -18.53046 -18.24158 -17.54850 -17.29216 -17.20495 -17.03744 -16.55522 -16.40595 -15.77157 -15.50663 -15.30394 -15.15693 -14.44098 -14.22855 -14.15801 -14.00736 -13.89776 -13.84895 -13.69852 -13.50118 -13.43365 -13.14429 -12.87607 -12.77385 -12.54675 -12.45362 -11.81589 -11.69051 -11.32729 -10.97332 -10.78781 -10.78465 -10.41520 -10.38050 -10.28625 -9.52496 -9.40706 -9.18278 -8.04778 -6.07221 0.01271 0.24504 0.79606 0.85265 1.34768 1.38449 1.45921 1.79567 1.83042 2.45814 2.70748 2.78088 3.19505 3.27722 3.36259 3.83407 3.91580 4.04461 4.12431 4.25769 4.36679 4.37018 4.39086 4.42563 4.43101 4.52671 4.55631 4.63292 4.65393 4.68769 4.73945 4.93359 4.98055 5.05532 5.14362 5.18641 5.32475 5.39707 5.53632 5.64162 5.68027 5.78807 5.85435 5.96051 6.17704 6.40562 6.47732 6.48287 6.91019 7.00544 7.35449 7.55993 9.05170 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.003680 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.542138 B = 7607.267194 C = 9186.002453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.486 4.486 8 H 0.047 0.953 9 C 0.082 3.918 10 H 0.026 0.974 11 C -0.108 4.108 12 C 0.539 3.461 13 O -0.544 6.544 14 N -0.629 5.629 15 C 0.151 3.849 16 C -0.168 4.168 17 C -0.054 4.054 18 C -0.157 4.157 19 C 0.101 3.899 20 N -0.494 5.494 21 C 0.097 3.903 22 C 0.157 3.843 23 C -0.045 4.045 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.128 4.128 28 C -0.143 4.143 29 H 0.254 0.746 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.194 0.806 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -15.568 -8.467 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.063 3.937 10 H 0.044 0.956 11 C -0.148 4.148 12 C 0.330 3.670 13 O -0.419 6.419 14 N -0.366 5.366 15 C 0.028 3.972 16 C -0.171 4.171 17 C -0.080 4.080 18 C -0.177 4.177 19 C -0.057 4.057 20 N -0.204 5.204 21 C -0.040 4.040 22 C 0.034 3.966 23 C -0.045 4.045 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.165 4.165 27 C -0.146 4.146 28 C -0.161 4.161 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.179 0.821 35 H 0.198 0.802 36 H 0.210 0.790 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.897 -15.413 -7.904 19.949 hybrid contribution -0.155 2.174 -0.873 2.347 sum 9.742 -13.239 -8.777 18.633 Atomic orbital electron populations 1.70054 1.07092 1.26342 1.52088 1.25462 0.95304 1.01659 0.94935 0.85879 0.79561 0.81483 0.76944 1.19074 1.21843 1.20746 1.21009 0.92308 0.90985 1.48103 0.93459 1.17640 0.95675 0.91696 0.88693 0.95578 1.21681 1.02863 0.99918 0.90320 1.20724 0.76281 0.82951 0.87054 1.90763 1.48593 1.23541 1.78982 1.48142 1.53628 1.23095 1.11733 1.20021 0.98507 0.96246 0.82420 1.21238 1.01294 0.97772 0.96771 1.21354 0.93857 0.98413 0.94406 1.22529 0.98867 0.93754 1.02515 1.23373 0.95633 0.99933 0.86746 1.66818 1.09080 1.20621 1.23834 1.21348 0.95621 0.91176 0.95813 1.20103 0.96935 0.85413 0.94185 1.20514 0.93142 0.92616 0.98273 1.21039 0.98891 1.00251 0.94340 1.21371 0.97560 0.99464 0.96020 1.21262 0.92618 1.02494 1.00141 1.21282 0.99964 0.99858 0.93530 1.21103 0.96355 1.01101 0.97561 0.93732 0.88884 0.88417 0.90903 0.90541 0.82149 0.80234 0.78964 0.88084 0.88346 0.86644 0.84159 0.83895 0.85054 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.55 12.87 21.45 0.28 -56.27 16 2 C 0.03 1.47 5.45 84.66 0.46 1.94 16 3 Si 0.93 47.08 29.54 68.60 2.03 49.10 16 4 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.49 -26.92 6.37 25.60 0.16 -26.75 16 8 H 0.05 2.59 7.82 -2.91 -0.02 2.56 16 9 C 0.08 4.07 1.67 -12.29 -0.02 4.05 16 10 H 0.03 1.52 6.98 -2.39 -0.02 1.50 16 11 C -0.11 -4.27 4.20 29.84 0.13 -4.14 16 12 C 0.54 22.70 7.62 87.65 0.67 23.36 16 13 O -0.54 -28.83 15.36 -3.03 -0.05 -28.88 16 14 N -0.63 -20.72 3.34 -829.55 -2.77 -23.49 16 15 C 0.15 4.39 6.91 85.58 0.59 4.98 16 16 C -0.17 -3.93 6.24 -19.83 -0.12 -4.05 16 17 C -0.05 -0.88 10.17 22.47 0.23 -0.65 16 18 C -0.16 -1.88 10.12 22.36 0.23 -1.65 16 19 C 0.10 1.51 11.18 84.71 0.95 2.46 16 20 N -0.49 -11.15 10.36 -183.67 -1.90 -13.05 16 21 C 0.10 2.41 7.40 42.51 0.31 2.72 16 22 C 0.16 4.07 6.54 85.67 0.56 4.63 16 23 C -0.04 -2.01 4.77 -19.87 -0.09 -2.11 16 24 C -0.13 -4.97 8.86 22.27 0.20 -4.78 16 25 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 26 C -0.15 -4.60 10.05 22.27 0.22 -4.37 16 27 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 28 C -0.14 -6.16 9.67 22.27 0.22 -5.94 16 29 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.10 3.47 7.78 -2.38 -0.02 3.45 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 36 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.12 4.35 7.76 -2.91 -0.02 4.33 16 40 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 41 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 42 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16 Total: -1.00 -76.97 365.74 3.72 -73.25 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.01 Total: 17.87 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 5.13 Total: -18.52 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -4.40 Total: -92.82 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.05 Total: -28.88 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -76.97 3.72 -73.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582900583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.475 kcal (2) G-P(sol) polarization free energy of solvation -76.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds