Wall clock time and date at job start Tue Mar 31 2020 13:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48500 * 109.47258 * 95.27187 * 3 2 1 5 5 H 1.48507 * 109.46974 * 215.26976 * 3 2 1 6 6 H 1.48497 * 109.47339 * 335.26605 * 3 2 1 7 7 C 1.37878 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00230 * 355.02213 * 7 2 1 9 9 C 1.50702 * 119.99676 * 175.01189 * 7 2 1 10 10 H 1.08998 * 109.47611 * 334.87867 * 9 7 2 11 11 C 1.53002 * 109.46832 * 214.87778 * 9 7 2 12 12 C 1.50690 * 109.47410 * 65.00347 * 11 9 7 13 13 O 1.21283 * 120.00086 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00063 * 179.97438 * 12 11 9 15 15 C 1.46664 * 126.56575 * 180.02562 * 14 12 11 16 16 C 1.50640 * 107.64039 * 180.02562 * 15 14 12 17 17 C 1.38689 * 131.50570 * 179.97438 * 16 15 14 18 18 C 1.38615 * 118.44621 * 179.97438 * 17 16 15 19 19 C 1.38231 * 119.01447 * 0.02562 * 18 17 16 20 20 N 1.31728 * 120.83421 * 0.02562 * 19 18 17 21 21 C 1.32247 * 121.90984 * 359.95318 * 20 19 18 22 22 C 1.46620 * 126.57109 * 359.68632 * 14 12 11 23 23 C 1.50705 * 109.46922 * 94.88090 * 9 7 2 24 24 C 1.38235 * 119.99935 * 54.76844 * 23 9 7 25 25 C 1.38232 * 119.99505 * 179.81185 * 24 23 9 26 26 C 1.38232 * 120.00145 * 0.39650 * 25 24 23 27 27 C 1.38233 * 120.00399 * 359.85298 * 26 25 24 28 28 C 1.38235 * 119.99615 * 235.03821 * 23 9 7 29 29 H 0.96996 * 120.00151 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47076 * 185.00332 * 11 9 7 31 31 H 1.09001 * 109.47326 * 304.99640 * 11 9 7 32 32 H 1.09004 * 109.82223 * 299.52440 * 15 14 12 33 33 H 1.08993 * 109.82593 * 60.47030 * 15 14 12 34 34 H 1.08000 * 120.77428 * 359.97438 * 17 16 15 35 35 H 1.07997 * 120.49364 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.57690 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.80358 * 299.56795 * 22 14 12 38 38 H 1.09010 * 109.79969 * 60.43588 * 22 14 12 39 39 H 1.07993 * 120.00090 * 359.97438 * 24 23 9 40 40 H 1.07999 * 119.99868 * 180.22955 * 25 24 23 41 41 H 1.08005 * 120.00087 * 179.83205 * 26 25 24 42 42 H 1.07996 * 120.00472 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00114 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6081 1.9822 1.3941 5 1 3.4866 1.4749 -0.8085 6 1 1.3954 2.6823 -0.5858 7 6 2.0046 -1.1941 0.0005 8 1 1.4676 -2.1276 0.0821 9 6 3.5073 -1.1965 -0.1129 10 1 3.8352 -0.2867 -0.6158 11 6 3.9557 -2.4158 -0.9211 12 6 3.4494 -2.2951 -2.3353 13 8 2.7940 -1.3291 -2.6643 14 7 3.7249 -3.2605 -3.2344 15 6 3.3079 -3.2900 -4.6403 16 6 3.8457 -4.5584 -5.2494 17 6 3.7456 -5.0763 -6.5321 18 6 4.3572 -6.2903 -6.8036 19 6 5.0408 -6.9378 -5.7915 20 7 5.1137 -6.4155 -4.5844 21 6 4.5438 -5.2597 -4.2872 22 6 4.5047 -4.4792 -2.9965 23 6 4.1150 -1.2559 1.2649 24 6 3.7571 -2.2686 2.1350 25 6 4.3175 -2.3252 3.3974 26 6 5.2295 -1.3646 3.7925 27 6 5.5835 -0.3489 2.9243 28 6 5.0260 -0.2944 1.6604 29 1 -0.4850 0.8400 -0.0004 30 1 5.0446 -2.4667 -0.9281 31 1 3.5527 -3.3210 -0.4669 32 1 2.2197 -3.2827 -4.7033 33 1 3.7154 -2.4259 -5.1649 34 1 3.2038 -4.5462 -7.3014 35 1 4.2999 -6.7241 -7.7909 36 1 5.5211 -7.8839 -5.9931 37 1 5.5169 -4.2158 -2.6897 38 1 4.0269 -5.0777 -2.2208 39 1 3.0417 -3.0170 1.8277 40 1 4.0407 -3.1186 4.0760 41 1 5.6653 -1.4073 4.7798 42 1 6.2957 0.4019 3.2331 43 1 5.3026 0.4990 0.9819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582900585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:31 Heat of formation + Delta-G solvation = 43.330983 kcal Electronic energy + Delta-G solvation = -26162.644841 eV Core-core repulsion = 22559.031050 eV Total energy + Delta-G solvation = -3603.613790 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10150 -39.18474 -38.40535 -36.35605 -34.11270 -32.98184 -31.74848 -31.25030 -30.21969 -29.16952 -28.20883 -26.55467 -25.10803 -22.71622 -22.33300 -22.08419 -21.79739 -19.95625 -18.79667 -17.07783 -16.98345 -16.58735 -16.18643 -16.10941 -16.03282 -15.43996 -14.62210 -14.38338 -14.12782 -14.02252 -13.67742 -13.38959 -13.16470 -12.96015 -12.91445 -12.73098 -12.67296 -12.53413 -12.24773 -11.93779 -11.85314 -11.82218 -11.18510 -10.79856 -10.51530 -10.38896 -9.99941 -9.89127 -9.62465 -9.58005 -9.32672 -9.18525 -9.06446 -8.45461 -8.24632 -8.23714 -7.83518 -5.99010 -3.96180 0.79861 1.00015 2.07559 2.12834 3.03361 3.32262 3.41327 3.45431 3.46305 3.48187 3.65905 4.22582 4.50294 4.55747 4.58864 4.74973 4.83688 5.06300 5.14496 5.33207 5.39347 5.46515 5.50570 5.54032 5.55674 5.57546 5.66321 5.69351 5.83522 5.91054 5.93098 5.99327 6.04468 6.22650 6.30996 6.37108 6.40340 6.60009 6.68116 6.81791 7.01228 7.12764 7.24427 7.56462 7.68999 7.71077 7.81069 7.82574 8.51867 8.81613 8.99863 9.65259 11.14158 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.003623 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.457617 B = 7725.484343 C = 9043.948771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.088 3.912 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.261 1.261 6 H -0.291 1.291 7 C -0.488 4.488 8 H 0.072 0.928 9 C 0.045 3.955 10 H 0.058 0.942 11 C -0.109 4.109 12 C 0.541 3.459 13 O -0.486 6.486 14 N -0.631 5.631 15 C 0.153 3.847 16 C -0.153 4.153 17 C -0.054 4.054 18 C -0.172 4.172 19 C 0.104 3.896 20 N -0.471 5.471 21 C 0.116 3.884 22 C 0.160 3.840 23 C -0.040 4.040 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.149 4.149 27 C -0.124 4.124 28 C -0.140 4.140 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.855 -11.383 -8.460 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.115 4.115 3 Si 0.698 3.302 4 H -0.202 1.202 5 H -0.186 1.186 6 H -0.218 1.218 7 C -0.525 4.525 8 H 0.090 0.910 9 C 0.026 3.974 10 H 0.077 0.923 11 C -0.149 4.149 12 C 0.331 3.669 13 O -0.356 6.356 14 N -0.371 5.371 15 C 0.030 3.970 16 C -0.155 4.155 17 C -0.080 4.080 18 C -0.192 4.192 19 C -0.054 4.054 20 N -0.180 5.180 21 C -0.022 4.022 22 C 0.035 3.965 23 C -0.041 4.041 24 C -0.119 4.119 25 C -0.144 4.144 26 C -0.167 4.167 27 C -0.143 4.143 28 C -0.158 4.158 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.178 0.822 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.717 -11.034 -7.886 17.923 hybrid contribution -0.190 1.230 -0.734 1.445 sum 11.526 -9.804 -8.621 17.415 Atomic orbital electron populations 1.69881 1.06322 1.26826 1.50450 1.24860 0.94459 0.98707 0.93471 0.86980 0.80627 0.84186 0.78428 1.20160 1.18627 1.21766 1.20598 0.87315 0.94508 1.50065 0.91011 1.18328 0.97320 0.94348 0.87403 0.92349 1.21662 0.99629 1.02712 0.90929 1.20556 0.79604 0.80450 0.86286 1.90780 1.36275 1.29808 1.78724 1.48273 1.56074 1.22337 1.10430 1.20013 1.00301 0.93884 0.82847 1.21344 1.00420 0.98470 0.95264 1.20959 0.97003 0.95003 0.95036 1.22083 0.99761 0.96124 1.01224 1.22681 0.96020 0.99237 0.87427 1.66799 1.18819 1.10693 1.21664 1.21492 0.93646 0.91012 0.96049 1.19991 0.97772 0.85660 0.93064 1.20762 0.91616 0.92730 0.98979 1.20977 0.98694 0.99049 0.93138 1.21068 0.97859 0.98931 0.96574 1.20869 1.00286 0.96439 0.99111 1.20961 1.00474 0.98396 0.94425 1.21081 0.98473 0.99769 0.96495 0.92811 0.91045 0.89512 0.89752 0.90053 0.84464 0.84242 0.82241 0.89156 0.89038 0.86141 0.87124 0.87379 0.87319 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.87 22.61 27.15 -169.99 -4.62 18.00 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.26 -6.53 6.06 56.52 0.34 -6.19 16 6 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 7 C -0.49 -13.28 6.84 -34.44 -0.24 -13.51 16 8 H 0.07 2.11 8.06 -52.48 -0.42 1.68 16 9 C 0.05 1.02 1.21 -92.92 -0.11 0.91 16 10 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16 11 C -0.11 -2.03 4.22 -27.89 -0.12 -2.14 16 12 C 0.54 10.73 7.62 -10.99 -0.08 10.64 16 13 O -0.49 -11.95 15.36 5.55 0.09 -11.87 16 14 N -0.63 -10.00 3.34 -176.13 -0.59 -10.59 16 15 C 0.15 2.14 6.91 -5.13 -0.04 2.10 16 16 C -0.15 -1.83 6.24 -104.56 -0.65 -2.48 16 17 C -0.05 -0.50 10.17 -39.28 -0.40 -0.90 16 18 C -0.17 -1.37 10.12 -39.44 -0.40 -1.77 16 19 C 0.10 0.95 11.18 -17.60 -0.20 0.75 16 20 N -0.47 -5.72 10.36 -9.41 -0.10 -5.82 16 21 C 0.12 1.47 7.40 -82.40 -0.61 0.86 16 22 C 0.16 2.05 6.54 -5.04 -0.03 2.01 16 23 C -0.04 -0.83 4.55 -104.62 -0.48 -1.31 16 24 C -0.10 -1.93 8.88 -39.58 -0.35 -2.28 16 25 C -0.13 -2.12 10.05 -39.59 -0.40 -2.52 16 26 C -0.15 -2.40 10.05 -39.59 -0.40 -2.79 16 27 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 28 C -0.14 -2.71 9.43 -39.58 -0.37 -3.08 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 31 H 0.09 1.50 7.90 -51.93 -0.41 1.09 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 39 H 0.12 2.28 7.82 -52.49 -0.41 1.87 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.11 2.04 7.95 -52.49 -0.42 1.63 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -34.57 361.14 -10.12 -44.68 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.75 Total: 2.86 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -5.37 Total: -15.55 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.09 Total: -43.57 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.62 Total: 18.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.57 -10.12 -44.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582900585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.016 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds