Wall clock time and date at job start Tue Mar 31 2020 13:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48500 * 109.47258 * 95.27187 * 3 2 1 5 5 H 1.48507 * 109.46974 * 215.26976 * 3 2 1 6 6 H 1.48497 * 109.47339 * 335.26605 * 3 2 1 7 7 C 1.37878 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00230 * 355.02213 * 7 2 1 9 9 C 1.50702 * 119.99676 * 175.01189 * 7 2 1 10 10 H 1.08998 * 109.47611 * 334.87867 * 9 7 2 11 11 C 1.53002 * 109.46832 * 214.87778 * 9 7 2 12 12 C 1.50690 * 109.47410 * 65.00347 * 11 9 7 13 13 O 1.21283 * 120.00086 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00063 * 179.97438 * 12 11 9 15 15 C 1.46664 * 126.56575 * 180.02562 * 14 12 11 16 16 C 1.50640 * 107.64039 * 180.02562 * 15 14 12 17 17 C 1.38689 * 131.50570 * 179.97438 * 16 15 14 18 18 C 1.38615 * 118.44621 * 179.97438 * 17 16 15 19 19 C 1.38231 * 119.01447 * 0.02562 * 18 17 16 20 20 N 1.31728 * 120.83421 * 0.02562 * 19 18 17 21 21 C 1.32247 * 121.90984 * 359.95318 * 20 19 18 22 22 C 1.46620 * 126.57109 * 359.68632 * 14 12 11 23 23 C 1.50705 * 109.46922 * 94.88090 * 9 7 2 24 24 C 1.38235 * 119.99935 * 54.76844 * 23 9 7 25 25 C 1.38232 * 119.99505 * 179.81185 * 24 23 9 26 26 C 1.38232 * 120.00145 * 0.39650 * 25 24 23 27 27 C 1.38233 * 120.00399 * 359.85298 * 26 25 24 28 28 C 1.38235 * 119.99615 * 235.03821 * 23 9 7 29 29 H 0.96996 * 120.00151 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47076 * 185.00332 * 11 9 7 31 31 H 1.09001 * 109.47326 * 304.99640 * 11 9 7 32 32 H 1.09004 * 109.82223 * 299.52440 * 15 14 12 33 33 H 1.08993 * 109.82593 * 60.47030 * 15 14 12 34 34 H 1.08000 * 120.77428 * 359.97438 * 17 16 15 35 35 H 1.07997 * 120.49364 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.57690 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.80358 * 299.56795 * 22 14 12 38 38 H 1.09010 * 109.79969 * 60.43588 * 22 14 12 39 39 H 1.07993 * 120.00090 * 359.97438 * 24 23 9 40 40 H 1.07999 * 119.99868 * 180.22955 * 25 24 23 41 41 H 1.08005 * 120.00087 * 179.83205 * 26 25 24 42 42 H 1.07996 * 120.00472 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00114 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6081 1.9822 1.3941 5 1 3.4866 1.4749 -0.8085 6 1 1.3954 2.6823 -0.5858 7 6 2.0046 -1.1941 0.0005 8 1 1.4676 -2.1276 0.0821 9 6 3.5073 -1.1965 -0.1129 10 1 3.8352 -0.2867 -0.6158 11 6 3.9557 -2.4158 -0.9211 12 6 3.4494 -2.2951 -2.3353 13 8 2.7940 -1.3291 -2.6643 14 7 3.7249 -3.2605 -3.2344 15 6 3.3079 -3.2900 -4.6403 16 6 3.8457 -4.5584 -5.2494 17 6 3.7456 -5.0763 -6.5321 18 6 4.3572 -6.2903 -6.8036 19 6 5.0408 -6.9378 -5.7915 20 7 5.1137 -6.4155 -4.5844 21 6 4.5438 -5.2597 -4.2872 22 6 4.5047 -4.4792 -2.9965 23 6 4.1150 -1.2559 1.2649 24 6 3.7571 -2.2686 2.1350 25 6 4.3175 -2.3252 3.3974 26 6 5.2295 -1.3646 3.7925 27 6 5.5835 -0.3489 2.9243 28 6 5.0260 -0.2944 1.6604 29 1 -0.4850 0.8400 -0.0004 30 1 5.0446 -2.4667 -0.9281 31 1 3.5527 -3.3210 -0.4669 32 1 2.2197 -3.2827 -4.7033 33 1 3.7154 -2.4259 -5.1649 34 1 3.2038 -4.5462 -7.3014 35 1 4.2999 -6.7241 -7.7909 36 1 5.5211 -7.8839 -5.9931 37 1 5.5169 -4.2158 -2.6897 38 1 4.0269 -5.0777 -2.2208 39 1 3.0417 -3.0170 1.8277 40 1 4.0407 -3.1186 4.0760 41 1 5.6653 -1.4073 4.7798 42 1 6.2957 0.4019 3.2331 43 1 5.3026 0.4990 0.9819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582900585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:30 Heat of formation + Delta-G solvation = 22.090036 kcal Electronic energy + Delta-G solvation = -26163.565917 eV Core-core repulsion = 22559.031050 eV Total energy + Delta-G solvation = -3604.534867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06520 -40.60112 -39.78571 -37.60481 -35.86604 -33.88775 -33.66831 -32.38881 -31.59843 -30.50819 -29.32871 -28.10693 -26.50422 -24.26268 -23.30803 -23.18777 -22.97189 -21.44311 -20.28064 -19.05310 -18.32730 -17.60046 -17.35047 -17.28673 -17.06996 -16.55047 -16.39865 -15.92460 -15.45484 -15.33710 -15.16973 -14.71817 -14.35991 -14.21481 -14.10743 -13.94538 -13.88652 -13.84263 -13.67940 -13.57237 -13.25456 -12.93844 -12.77701 -12.76169 -12.06024 -11.88701 -11.83542 -11.49213 -11.02801 -10.87401 -10.79237 -10.58536 -10.38996 -10.30834 -9.62679 -9.42756 -9.31423 -8.22696 -6.19352 0.00541 0.23809 0.67877 0.72690 1.29794 1.33207 1.38812 1.73453 1.80561 2.39054 2.70078 2.76480 3.07814 3.20635 3.26995 3.80126 3.87271 4.02904 4.11201 4.11514 4.27962 4.31007 4.35140 4.36894 4.40898 4.47345 4.49582 4.52468 4.61282 4.63387 4.68736 4.82777 4.86216 4.97498 5.08671 5.13787 5.19027 5.29516 5.38083 5.40623 5.67353 5.68293 5.76753 5.82353 6.02110 6.31697 6.35714 6.44226 6.79597 6.90088 7.28978 7.44166 8.94697 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.003623 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.457617 B = 7725.484343 C = 9043.948771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.026 3.974 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.250 1.250 6 H -0.298 1.298 7 C -0.465 4.465 8 H 0.035 0.965 9 C 0.048 3.952 10 H 0.040 0.960 11 C -0.103 4.103 12 C 0.538 3.462 13 O -0.548 6.548 14 N -0.628 5.628 15 C 0.151 3.849 16 C -0.169 4.169 17 C -0.054 4.054 18 C -0.157 4.157 19 C 0.101 3.899 20 N -0.493 5.493 21 C 0.097 3.903 22 C 0.157 3.843 23 C -0.064 4.064 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.123 4.123 28 C -0.156 4.156 29 H 0.259 0.741 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.194 0.806 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.125 -13.126 -8.349 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.170 4.170 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.174 1.174 6 H -0.225 1.225 7 C -0.503 4.503 8 H 0.053 0.947 9 C 0.029 3.971 10 H 0.058 0.942 11 C -0.143 4.143 12 C 0.329 3.671 13 O -0.423 6.423 14 N -0.365 5.365 15 C 0.028 3.972 16 C -0.171 4.171 17 C -0.080 4.080 18 C -0.176 4.176 19 C -0.057 4.057 20 N -0.203 5.203 21 C -0.040 4.040 22 C 0.033 3.967 23 C -0.064 4.064 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.157 4.157 27 C -0.141 4.141 28 C -0.175 4.175 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.178 0.822 35 H 0.198 0.802 36 H 0.211 0.789 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.047 -12.834 -7.780 21.253 hybrid contribution -1.099 1.525 -0.824 2.053 sum 13.948 -11.309 -8.604 19.912 Atomic orbital electron populations 1.70028 1.07956 1.27178 1.54212 1.25579 0.95025 1.02050 0.94386 0.86170 0.79755 0.80505 0.78980 1.18934 1.17424 1.22514 1.20808 0.90023 0.92519 1.46957 0.94651 1.18172 0.94194 0.95249 0.89517 0.94225 1.21580 1.01731 1.01255 0.89752 1.20726 0.78929 0.80337 0.87152 1.90749 1.39231 1.32430 1.79898 1.48088 1.55245 1.22329 1.10805 1.20030 0.99609 0.95550 0.82026 1.21233 1.01623 0.97596 0.96662 1.21354 0.96752 0.95640 0.94298 1.22530 0.97595 0.94879 1.02645 1.23377 0.95468 1.00170 0.86642 1.66818 1.19531 1.10486 1.23468 1.21346 0.95004 0.91826 0.95801 1.20124 0.98033 0.84496 0.94009 1.20474 0.93692 0.94587 0.97689 1.21019 0.99272 0.98890 0.94441 1.21407 0.97213 0.99852 0.95722 1.21348 0.98929 0.95024 1.00427 1.21342 1.00280 0.99211 0.93264 1.21220 0.98903 0.99389 0.97943 0.93255 0.87517 0.88502 0.91255 0.90182 0.82179 0.80228 0.78928 0.87541 0.88582 0.87187 0.84249 0.83525 0.84139 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.77 13.96 21.45 0.30 -62.47 16 2 C 0.03 1.60 5.47 84.65 0.46 2.06 16 3 Si 0.92 48.32 27.15 68.60 1.86 50.18 16 4 H -0.26 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.25 -12.50 6.06 99.48 0.60 -11.90 16 6 H -0.30 -15.81 7.11 99.48 0.71 -15.10 16 7 C -0.47 -26.65 6.84 25.60 0.18 -26.47 16 8 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 9 C 0.05 2.22 1.21 -12.28 -0.01 2.21 16 10 H 0.04 1.98 4.70 -2.39 -0.01 1.97 16 11 C -0.10 -3.91 4.22 29.85 0.13 -3.78 16 12 C 0.54 22.27 7.62 87.65 0.67 22.94 16 13 O -0.55 -28.63 15.36 -3.04 -0.05 -28.67 16 14 N -0.63 -20.57 3.34 -829.53 -2.77 -23.33 16 15 C 0.15 4.41 6.91 85.58 0.59 5.00 16 16 C -0.17 -3.96 6.24 -19.83 -0.12 -4.08 16 17 C -0.05 -0.89 10.17 22.47 0.23 -0.67 16 18 C -0.16 -1.90 10.12 22.36 0.23 -1.67 16 19 C 0.10 1.52 11.18 84.71 0.95 2.46 16 20 N -0.49 -11.10 10.36 -183.67 -1.90 -13.00 16 21 C 0.10 2.39 7.40 42.50 0.31 2.71 16 22 C 0.16 4.00 6.54 85.67 0.56 4.56 16 23 C -0.06 -2.62 4.55 -19.86 -0.09 -2.71 16 24 C -0.12 -4.45 8.88 22.27 0.20 -4.25 16 25 C -0.12 -3.81 10.05 22.27 0.22 -3.58 16 26 C -0.14 -3.88 10.05 22.27 0.22 -3.66 16 27 C -0.12 -3.73 10.05 22.27 0.22 -3.50 16 28 C -0.16 -5.79 9.43 22.27 0.21 -5.58 16 29 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 30 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.10 3.43 7.90 -2.39 -0.02 3.41 16 32 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.11 4.26 7.82 -2.91 -0.02 4.24 16 40 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 43 H 0.11 3.94 7.95 -2.91 -0.02 3.92 16 Total: -1.00 -81.18 361.14 3.50 -77.68 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.91 Total: 17.64 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 5.15 Total: -18.02 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -4.37 Total: -98.80 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.86 Total: 50.18 kcal Total: -81.18 3.50 -77.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582900585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.771 kcal (2) G-P(sol) polarization free energy of solvation -81.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds