Wall clock time and date at job start Tue Mar 31 2020 13:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86795 * 120.00292 * 2 1 4 4 H 1.48498 * 109.47360 * 270.26914 * 3 2 1 5 5 H 1.48503 * 109.47343 * 30.26825 * 3 2 1 6 6 H 1.48501 * 109.47676 * 150.26821 * 3 2 1 7 7 C 1.40033 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99891 * 342.69472 * 7 2 1 9 9 C 1.41547 * 120.00435 * 162.70097 * 7 2 1 10 10 C 1.41170 * 120.99707 * 151.61248 * 9 7 2 11 11 C 1.37588 * 119.02252 * 180.02562 * 10 9 7 12 12 N 1.32085 * 121.10797 * 359.97438 * 11 10 9 13 13 C 1.32480 * 122.22921 * 0.02562 * 12 11 10 14 14 N 1.39382 * 119.58205 * 180.27598 * 13 12 11 15 15 C 1.34781 * 120.00114 * 5.16068 * 14 13 12 16 16 O 1.21552 * 119.99509 * 4.87815 * 15 14 13 17 17 C 1.47803 * 120.00027 * 184.87866 * 15 14 13 18 18 C 1.39593 * 120.14701 * 359.72888 * 17 15 14 19 19 C 1.37954 * 119.84906 * 179.72191 * 18 17 15 20 20 C 1.38366 * 120.14838 * 0.54965 * 19 18 17 21 21 C 1.50694 * 119.85546 * 179.74475 * 20 19 18 22 22 C 1.53779 * 113.61262 * 37.47322 * 21 20 19 23 23 C 1.53783 * 87.08248 * 220.02166 * 22 21 20 24 24 C 1.53778 * 87.08201 * 25.43251 * 23 22 21 25 25 C 1.38370 * 120.29208 * 359.72202 * 20 19 18 26 26 C 1.37951 * 120.14728 * 359.97438 * 25 20 19 27 27 C 1.38622 * 120.83936 * 0.02562 * 13 12 11 28 28 H 0.97002 * 119.99899 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.49475 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.44576 * 180.02562 * 11 10 9 31 31 H 0.97001 * 120.00435 * 185.16254 * 14 13 12 32 32 H 1.08001 * 120.07525 * 359.97438 * 18 17 15 33 33 H 1.07994 * 119.92784 * 180.29020 * 19 18 17 34 34 H 1.09000 * 112.85509 * 168.78446 * 21 20 19 35 35 H 1.08995 * 113.61756 * 334.56807 * 22 21 20 36 36 H 1.08996 * 113.61429 * 105.47508 * 22 21 20 37 37 H 1.09001 * 113.61327 * 270.88504 * 23 22 21 38 38 H 1.08998 * 113.61695 * 139.98541 * 23 22 21 39 39 H 1.08999 * 113.62024 * 220.01905 * 24 23 22 40 40 H 1.09005 * 113.69213 * 89.12761 * 24 23 22 41 41 H 1.07999 * 119.92478 * 180.02562 * 25 20 19 42 42 H 1.08001 * 120.07164 * 180.02562 * 26 25 20 43 43 H 1.08001 * 120.60716 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.4833 2.0496 -1.4000 5 1 1.4418 2.6510 0.7057 6 1 3.5418 1.4385 0.6943 7 6 2.0075 -1.2127 0.0005 8 1 1.5042 -2.1268 0.2792 9 6 3.3750 -1.2407 -0.3639 10 6 4.2463 -2.2217 0.1569 11 6 5.5682 -2.2107 -0.2245 12 7 6.0284 -1.3018 -1.0652 13 6 5.2526 -0.3604 -1.5820 14 7 5.7951 0.5681 -2.4687 15 6 7.0738 0.4435 -2.8763 16 8 7.7265 -0.5258 -2.5417 17 6 7.6822 1.4854 -3.7301 18 6 6.9336 2.5969 -4.1208 19 6 7.5093 3.5685 -4.9130 20 6 8.8223 3.4375 -5.3297 21 6 9.4428 4.4999 -6.1997 22 6 9.0013 5.9278 -5.8378 23 6 8.9433 6.2085 -7.3487 24 6 8.7169 4.6997 -7.5406 25 6 9.5681 2.3353 -4.9506 26 6 9.0064 1.3595 -4.1535 27 6 3.9071 -0.2901 -1.2561 28 1 -0.4850 0.8401 -0.0004 29 1 3.8807 -2.9700 0.8446 30 1 6.2407 -2.9583 0.1694 31 1 5.2525 1.3041 -2.7926 32 1 5.9072 2.6981 -3.8002 33 1 6.9328 4.4313 -5.2121 34 1 10.5224 4.3876 -6.3002 35 1 8.0288 5.9731 -5.3477 36 1 9.7665 6.5024 -5.3160 37 1 9.8864 6.5647 -7.7631 38 1 8.0913 6.8194 -7.6469 39 1 9.2525 4.2827 -8.3935 40 1 7.6669 4.4077 -7.5164 41 1 10.5925 2.2392 -5.2789 42 1 9.5898 0.5000 -3.8580 43 1 3.2781 0.4787 -1.6799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583059206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:09 Heat of formation + Delta-G solvation = 45.522687 kcal Electronic energy + Delta-G solvation = -25426.896496 eV Core-core repulsion = 21823.377745 eV Total energy + Delta-G solvation = -3603.518751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53615 -39.67460 -38.34176 -37.26799 -34.50476 -33.86097 -31.70594 -31.28459 -31.05524 -28.89176 -26.25460 -25.97676 -25.93022 -23.15540 -22.84742 -22.38872 -21.33938 -19.88162 -19.40631 -18.16368 -17.76358 -16.59430 -16.19409 -15.65081 -15.53280 -15.09998 -14.78324 -14.70891 -14.58310 -14.18484 -13.88034 -13.60682 -13.44504 -13.25975 -12.96891 -12.92264 -12.80780 -12.67595 -12.21455 -12.01905 -11.66491 -11.34631 -10.99209 -10.92060 -10.84700 -10.78234 -10.74616 -10.55827 -10.06811 -9.92223 -9.62802 -9.38366 -9.13168 -8.81697 -8.26831 -7.91916 -7.28638 -7.10288 -4.76241 0.75674 1.23525 2.32535 2.59860 2.95398 3.03961 3.17535 3.23706 3.38271 3.84469 3.88374 4.22806 4.26556 4.36630 4.54649 4.58853 4.64618 4.74037 4.77808 4.94017 5.17112 5.21598 5.33229 5.38350 5.38675 5.43992 5.54979 5.59506 5.63180 5.74111 5.79061 5.86102 6.04163 6.17189 6.21733 6.32308 6.36828 6.40470 6.40988 6.54856 6.74101 6.92149 7.09809 7.22168 7.55254 7.70658 7.99104 8.17630 8.39535 8.61775 8.63414 9.42312 9.90857 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.002945 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.797448 B = 9506.414987 C =10905.808459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.086 3.914 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.248 1.248 7 C -0.437 4.437 8 H 0.096 0.904 9 C 0.128 3.872 10 C -0.272 4.272 11 C 0.129 3.871 12 N -0.557 5.557 13 C 0.370 3.630 14 N -0.659 5.659 15 C 0.543 3.457 16 O -0.472 6.472 17 C -0.129 4.129 18 C -0.087 4.087 19 C -0.124 4.124 20 C -0.053 4.053 21 C -0.077 4.077 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.058 4.058 27 C -0.325 4.325 28 H 0.288 0.712 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.406 0.594 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.137 0.863 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.841 13.262 -12.474 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.171 1.171 7 C -0.467 4.467 8 H 0.114 0.886 9 C 0.119 3.881 10 C -0.295 4.295 11 C -0.023 4.023 12 N -0.276 5.276 13 C 0.143 3.857 14 N -0.305 5.305 15 C 0.329 3.671 16 O -0.343 6.343 17 C -0.133 4.133 18 C -0.105 4.105 19 C -0.142 4.142 20 C -0.053 4.053 21 C -0.095 4.095 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.168 4.168 25 C -0.143 4.143 26 C -0.076 4.076 27 C -0.350 4.350 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.148 0.852 31 H 0.242 0.758 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.988 12.626 -12.461 23.223 hybrid contribution -1.145 1.136 0.098 1.616 sum 13.843 13.762 -12.363 23.105 Atomic orbital electron populations 1.69642 1.08141 1.30611 1.33758 1.26202 0.94749 1.01931 0.90633 0.86243 0.80816 0.79415 0.78949 1.19613 1.21734 1.17087 1.19504 0.92345 0.96239 1.38587 0.88622 1.17680 0.93101 0.89497 0.87800 1.21908 0.94418 1.05473 1.07710 1.21905 0.93371 0.94534 0.92491 1.67294 1.37372 1.06699 1.16258 1.17972 0.88661 0.89272 0.89778 1.43424 1.12961 1.28795 1.45317 1.18361 0.81768 0.86238 0.80703 1.90849 1.60494 1.29829 1.53110 1.20116 0.95655 0.96119 1.01375 1.21342 0.99466 0.93131 0.96584 1.20892 0.94953 0.99279 0.99099 1.19917 0.93889 0.95098 0.96398 1.21604 0.99843 0.92999 0.95074 1.23050 1.02214 0.95367 0.96607 1.22841 1.02131 0.96594 0.96541 1.22991 1.01114 0.96241 0.96493 1.21016 1.00103 0.94046 0.99121 1.21277 0.93562 0.98479 0.94326 1.21308 0.93785 1.09067 1.10858 0.90136 0.87147 0.85195 0.75767 0.85647 0.85509 0.88364 0.89543 0.91239 0.90140 0.91283 0.91257 0.89710 0.85529 0.84537 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.36 13.92 55.55 0.77 -19.59 16 2 C 0.09 2.16 5.44 -17.35 -0.09 2.07 16 3 Si 0.92 20.01 24.53 -169.99 -4.17 15.84 16 4 H -0.27 -5.47 6.46 56.52 0.36 -5.10 16 5 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.25 -5.67 6.99 56.52 0.40 -5.28 16 7 C -0.44 -11.47 9.64 -37.65 -0.36 -11.83 16 8 H 0.10 2.61 8.06 -52.48 -0.42 2.19 16 9 C 0.13 3.22 5.17 -106.55 -0.55 2.67 16 10 C -0.27 -6.36 9.90 -38.71 -0.38 -6.75 16 11 C 0.13 2.94 11.15 -17.68 -0.20 2.74 16 12 N -0.56 -13.67 7.88 -12.54 -0.10 -13.77 16 13 C 0.37 8.65 7.40 -154.77 -1.15 7.51 16 14 N -0.66 -12.72 5.33 -12.36 -0.07 -12.79 16 15 C 0.54 10.31 7.72 -12.35 -0.10 10.21 16 16 O -0.47 -10.67 14.63 5.32 0.08 -10.59 16 17 C -0.13 -1.89 5.87 -104.97 -0.62 -2.51 16 18 C -0.09 -1.03 9.54 -39.18 -0.37 -1.40 16 19 C -0.12 -1.24 8.59 -39.64 -0.34 -1.58 16 20 C -0.05 -0.51 5.30 -104.53 -0.55 -1.06 16 21 C -0.08 -0.56 3.98 -90.96 -0.36 -0.92 16 22 C -0.14 -0.88 7.45 -25.92 -0.19 -1.08 16 23 C -0.14 -0.82 8.08 -25.92 -0.21 -1.03 16 24 C -0.13 -0.86 7.55 -25.92 -0.20 -1.06 16 25 C -0.12 -1.30 9.69 -39.64 -0.38 -1.68 16 26 C -0.06 -0.75 9.60 -39.18 -0.38 -1.13 16 27 C -0.32 -7.79 7.19 -38.47 -0.28 -8.07 16 28 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 29 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 30 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 31 H 0.41 6.42 6.74 -40.82 -0.28 6.14 16 32 H 0.13 1.30 6.42 -52.49 -0.34 0.97 16 33 H 0.13 1.00 6.64 -52.49 -0.35 0.65 16 34 H 0.10 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.09 0.58 6.30 -51.93 -0.33 0.25 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.59 7.72 -51.93 -0.40 0.19 16 41 H 0.13 1.02 8.05 -52.49 -0.42 0.60 16 42 H 0.14 1.82 7.65 -52.49 -0.40 1.41 16 43 H 0.11 2.53 4.43 -52.49 -0.23 2.29 16 LS Contribution 353.17 15.07 5.32 5.32 Total: -1.00 -31.15 353.17 -10.17 -41.33 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.30 Total: 9.15 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -6.71 Total: -14.90 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.61 Total: -46.15 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.17 Total: 15.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.15 -10.17 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583059206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.848 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds