Wall clock time and date at job start Tue Mar 31 2020 13:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47226 * 300.00311 * 3 2 1 6 6 H 1.48503 * 109.47224 * 60.00536 * 3 2 1 7 7 C 1.40023 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00302 * 189.82618 * 7 2 1 9 9 C 1.41546 * 120.00366 * 9.83171 * 7 2 1 10 10 C 1.41177 * 120.99454 * 26.22971 * 9 7 2 11 11 C 1.37583 * 119.01437 * 180.02562 * 10 9 7 12 12 N 1.32079 * 121.11123 * 359.97438 * 11 10 9 13 13 C 1.32468 * 122.23459 * 0.02562 * 12 11 10 14 14 N 1.39466 * 119.58320 * 179.72501 * 13 12 11 15 15 C 1.34774 * 120.00239 * 354.93367 * 14 13 12 16 16 O 1.21282 * 119.99610 * 354.90945 * 15 14 13 17 17 C 1.50697 * 120.00471 * 174.90864 * 15 14 13 18 18 H 1.09002 * 109.67559 * 59.99960 * 17 15 14 19 19 C 1.53322 * 109.68565 * 180.51993 * 17 15 14 20 20 C 1.52734 * 108.38829 * 189.59177 * 19 17 15 21 21 C 1.50624 * 110.58978 * 308.89884 * 20 19 17 22 22 C 1.38916 * 117.75580 * 197.72420 * 21 20 19 23 23 C 1.37930 * 120.54533 * 180.23491 * 22 21 20 24 24 C 1.38261 * 119.77251 * 0.04217 * 23 22 21 25 25 C 1.37925 * 119.77358 * 359.87948 * 24 23 22 26 26 C 1.37667 * 122.56648 * 17.79272 * 21 20 19 27 27 C 1.50650 * 122.57082 * 359.27383 * 26 21 20 28 28 C 1.38602 * 120.83567 * 0.02562 * 13 12 11 29 29 H 0.96992 * 120.00258 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.48913 * 0.05043 * 10 9 7 31 31 H 1.08000 * 119.44841 * 180.02562 * 11 10 9 32 32 H 0.97005 * 120.00264 * 174.93156 * 14 13 12 33 33 H 1.09005 * 109.68112 * 309.31255 * 19 17 15 34 34 H 1.08999 * 109.68104 * 69.86887 * 19 17 15 35 35 H 1.09000 * 109.25060 * 69.18671 * 20 19 17 36 36 H 1.09000 * 109.25557 * 188.64729 * 20 19 17 37 37 H 1.08000 * 119.72454 * 0.26367 * 22 21 20 38 38 H 1.08002 * 120.11197 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.11586 * 179.89839 * 24 23 22 40 40 H 1.08002 * 119.73192 * 179.97438 * 25 24 23 41 41 H 1.09003 * 109.23624 * 257.47567 * 27 26 21 42 42 H 1.09003 * 109.27787 * 138.04613 * 27 26 21 43 43 H 1.07999 * 120.59994 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0758 -1.2196 0.1591 9 6 1.3155 -2.4294 -0.2104 10 6 0.1059 -2.4617 -0.9376 11 6 -0.5331 -3.6669 -1.1167 12 7 -0.0331 -4.7846 -0.6215 13 6 1.0979 -4.8083 0.0678 14 7 1.5725 -6.0195 0.5706 15 6 0.8323 -7.1385 0.4431 16 8 -0.2847 -7.0765 -0.0252 17 6 1.3925 -8.4667 0.8825 18 1 1.6305 -8.4311 1.9456 19 6 0.3640 -9.5732 0.6204 20 6 0.8553 -10.8558 1.2884 21 6 2.2773 -11.1501 0.8883 22 6 2.7519 -12.4403 1.0886 23 6 4.0466 -12.7718 0.7475 24 6 4.8800 -11.8126 0.2025 25 6 4.4103 -10.5315 0.0013 26 6 3.1059 -10.1963 0.3416 27 6 2.6550 -8.7823 0.0829 28 6 1.8123 -3.6437 0.3008 29 1 -0.4850 0.8400 0.0004 30 1 -0.3114 -1.5539 -1.3476 31 1 -1.4587 -3.6998 -1.6722 32 1 2.4355 -6.0565 1.0121 33 1 -0.5996 -9.2859 1.0414 34 1 0.2630 -9.7337 -0.4530 35 1 0.8031 -10.7400 2.3709 36 1 0.2179 -11.6862 0.9847 37 1 2.1016 -13.1900 1.5144 38 1 4.4082 -13.7771 0.9058 39 1 5.8953 -12.0657 -0.0651 40 1 5.0620 -9.7827 -0.4241 41 1 2.4470 -8.6605 -0.9802 42 1 3.4471 -8.0928 0.3748 43 1 2.7338 -3.6673 0.8636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584176088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:45 Heat of formation + Delta-G solvation = 8.580249 kcal Electronic energy + Delta-G solvation = -25556.705593 eV Core-core repulsion = 21951.584898 eV Total energy + Delta-G solvation = -3605.120695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.52684 -39.38631 -37.89895 -35.75026 -34.47872 -33.61100 -32.70726 -30.68797 -30.53666 -29.27208 -28.19708 -26.00549 -24.48574 -23.34831 -22.32236 -21.85068 -21.55062 -19.98819 -19.12579 -17.89330 -16.93720 -16.54588 -15.88395 -15.83754 -15.14689 -15.06276 -14.60448 -14.32438 -14.18173 -14.05272 -13.94220 -13.65959 -13.32636 -13.10151 -12.94897 -12.78908 -12.38415 -12.19748 -12.12295 -11.62272 -11.57411 -11.41468 -11.24577 -11.07224 -10.98909 -10.87956 -10.51173 -10.37420 -9.98982 -9.73510 -9.41964 -9.28921 -8.92577 -8.70843 -8.02607 -7.74179 -7.03722 -6.75967 -4.63852 1.19582 1.20125 2.55639 2.73696 3.01594 3.06553 3.15437 3.46122 3.54969 3.59266 3.85181 4.42413 4.51286 4.68265 4.76927 4.77468 4.84125 4.95824 4.99461 5.14499 5.25280 5.36130 5.38751 5.52335 5.62131 5.68267 5.71987 5.77771 5.86146 5.92204 6.02603 6.11008 6.26176 6.33782 6.34177 6.51424 6.58190 6.59528 6.77562 6.84960 6.91128 7.13948 7.39392 7.50839 7.79636 7.89931 8.18478 8.46318 8.68103 8.74222 8.85676 9.68629 10.09436 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025794 B = 0.002416 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.266536 B =11587.137322 C =12403.266336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.144 3.856 10 C -0.221 4.221 11 C 0.102 3.898 12 N -0.553 5.553 13 C 0.348 3.652 14 N -0.661 5.661 15 C 0.503 3.497 16 O -0.477 6.477 17 C -0.106 4.106 18 H 0.097 0.903 19 C -0.099 4.099 20 C -0.082 4.082 21 C -0.074 4.074 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.071 4.071 27 C -0.072 4.072 28 C -0.302 4.302 29 H 0.282 0.718 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.405 0.595 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 -18.181 2.794 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.245 4.245 11 C -0.049 4.049 12 N -0.273 5.273 13 C 0.120 3.880 14 N -0.307 5.307 15 C 0.287 3.713 16 O -0.346 6.346 17 C -0.127 4.127 18 H 0.115 0.885 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.074 4.074 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.071 4.071 27 C -0.109 4.109 28 C -0.328 4.328 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.240 0.760 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.829 -18.835 2.300 19.850 hybrid contribution 1.409 1.575 0.481 2.167 sum 7.237 -17.259 2.781 18.921 Atomic orbital electron populations 1.69757 1.07577 1.29275 1.35088 1.25968 0.94877 1.01517 0.92047 0.86146 0.80736 0.80519 0.78649 1.18374 1.19631 1.19856 1.19593 0.95784 0.89996 1.43228 0.90134 1.17615 0.90906 0.91533 0.86412 1.22329 0.99575 0.98112 1.04451 1.21916 0.97910 0.88056 0.97048 1.67190 1.12903 1.30369 1.16814 1.18017 0.92066 0.83695 0.94237 1.43505 1.22062 1.06994 1.58157 1.20542 0.86148 0.84918 0.79658 1.90783 1.17886 1.85676 1.40278 1.21356 0.96620 0.93221 1.01545 0.88524 1.21361 0.98172 0.92177 1.01931 1.20536 0.92037 0.98484 1.00795 1.19691 0.95919 0.93124 0.98689 1.21152 0.96056 0.95951 1.00786 1.21047 0.94166 0.99301 0.99767 1.21046 0.99711 0.93471 1.00009 1.21178 0.95283 0.96842 1.00340 1.19576 0.93623 0.95177 0.98697 1.20448 0.96375 0.92980 1.01145 1.21235 1.05066 0.92549 1.13917 0.90707 0.85044 0.85910 0.76039 0.90104 0.90934 0.90456 0.90415 0.86256 0.86299 0.86213 0.86027 0.89812 0.90106 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.92 10.70 55.55 0.59 -19.33 16 2 C 0.07 1.81 5.31 -17.35 -0.09 1.72 16 3 Si 0.92 18.03 29.57 -169.99 -5.03 13.00 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.45 -11.65 9.13 -37.65 -0.34 -11.99 16 8 H 0.08 1.96 7.87 -52.48 -0.41 1.55 16 9 C 0.14 3.77 5.60 -106.55 -0.60 3.18 16 10 C -0.22 -5.77 8.77 -38.71 -0.34 -6.11 16 11 C 0.10 2.55 11.15 -17.68 -0.20 2.36 16 12 N -0.55 -14.15 7.88 -12.53 -0.10 -14.25 16 13 C 0.35 8.11 7.40 -154.71 -1.15 6.96 16 14 N -0.66 -11.99 5.28 -11.49 -0.06 -12.05 16 15 C 0.50 8.90 7.09 -10.99 -0.08 8.82 16 16 O -0.48 -10.61 14.14 5.56 0.08 -10.54 16 17 C -0.11 -1.32 2.55 -91.74 -0.23 -1.55 16 18 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 19 C -0.10 -1.18 4.71 -26.70 -0.13 -1.30 16 20 C -0.08 -0.77 5.67 -28.06 -0.16 -0.93 16 21 C -0.07 -0.76 5.74 -104.62 -0.60 -1.36 16 22 C -0.12 -1.11 9.61 -39.44 -0.38 -1.49 16 23 C -0.12 -1.07 10.05 -39.69 -0.40 -1.47 16 24 C -0.12 -1.10 10.05 -39.69 -0.40 -1.50 16 25 C -0.12 -1.15 9.61 -39.45 -0.38 -1.53 16 26 C -0.07 -0.75 5.74 -104.61 -0.60 -1.35 16 27 C -0.07 -0.80 4.88 -28.04 -0.14 -0.94 16 28 C -0.30 -7.22 9.73 -38.48 -0.37 -7.59 16 29 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 30 H 0.13 3.47 6.11 -52.49 -0.32 3.15 16 31 H 0.12 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.41 5.71 8.54 -40.82 -0.35 5.36 16 33 H 0.08 1.04 7.81 -51.93 -0.41 0.64 16 34 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.12 0.86 8.05 -52.49 -0.42 0.44 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 1.01 8.05 -52.49 -0.42 0.59 16 41 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 42 H 0.08 0.78 7.98 -51.93 -0.41 0.36 16 43 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -31.71 357.21 -11.39 -43.10 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.68 Total: 10.78 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -6.58 Total: -16.09 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.43 Total: -45.63 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.71 -11.39 -43.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584176088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.676 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds