Wall clock time and date at job start Tue Mar 31 2020 13:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47226 * 300.00311 * 3 2 1 6 6 H 1.48503 * 109.47224 * 60.00536 * 3 2 1 7 7 C 1.40023 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00302 * 189.82618 * 7 2 1 9 9 C 1.41546 * 120.00366 * 9.83171 * 7 2 1 10 10 C 1.41177 * 120.99454 * 26.22971 * 9 7 2 11 11 C 1.37583 * 119.01437 * 180.02562 * 10 9 7 12 12 N 1.32079 * 121.11123 * 359.97438 * 11 10 9 13 13 C 1.32468 * 122.23459 * 0.02562 * 12 11 10 14 14 N 1.39466 * 119.58320 * 179.72501 * 13 12 11 15 15 C 1.34774 * 120.00239 * 354.93367 * 14 13 12 16 16 O 1.21282 * 119.99610 * 354.90945 * 15 14 13 17 17 C 1.50697 * 120.00471 * 174.90864 * 15 14 13 18 18 H 1.09002 * 109.67559 * 59.99960 * 17 15 14 19 19 C 1.53322 * 109.68565 * 180.51993 * 17 15 14 20 20 C 1.52734 * 108.38829 * 189.59177 * 19 17 15 21 21 C 1.50624 * 110.58978 * 308.89884 * 20 19 17 22 22 C 1.38916 * 117.75580 * 197.72420 * 21 20 19 23 23 C 1.37930 * 120.54533 * 180.23491 * 22 21 20 24 24 C 1.38261 * 119.77251 * 0.04217 * 23 22 21 25 25 C 1.37925 * 119.77358 * 359.87948 * 24 23 22 26 26 C 1.37667 * 122.56648 * 17.79272 * 21 20 19 27 27 C 1.50650 * 122.57082 * 359.27383 * 26 21 20 28 28 C 1.38602 * 120.83567 * 0.02562 * 13 12 11 29 29 H 0.96992 * 120.00258 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.48913 * 0.05043 * 10 9 7 31 31 H 1.08000 * 119.44841 * 180.02562 * 11 10 9 32 32 H 0.97005 * 120.00264 * 174.93156 * 14 13 12 33 33 H 1.09005 * 109.68112 * 309.31255 * 19 17 15 34 34 H 1.08999 * 109.68104 * 69.86887 * 19 17 15 35 35 H 1.09000 * 109.25060 * 69.18671 * 20 19 17 36 36 H 1.09000 * 109.25557 * 188.64729 * 20 19 17 37 37 H 1.08000 * 119.72454 * 0.26367 * 22 21 20 38 38 H 1.08002 * 120.11197 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.11586 * 179.89839 * 24 23 22 40 40 H 1.08002 * 119.73192 * 179.97438 * 25 24 23 41 41 H 1.09003 * 109.23624 * 257.47567 * 27 26 21 42 42 H 1.09003 * 109.27787 * 138.04613 * 27 26 21 43 43 H 1.07999 * 120.59994 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0758 -1.2196 0.1591 9 6 1.3155 -2.4294 -0.2104 10 6 0.1059 -2.4617 -0.9376 11 6 -0.5331 -3.6669 -1.1167 12 7 -0.0331 -4.7846 -0.6215 13 6 1.0979 -4.8083 0.0678 14 7 1.5725 -6.0195 0.5706 15 6 0.8323 -7.1385 0.4431 16 8 -0.2847 -7.0765 -0.0252 17 6 1.3925 -8.4667 0.8825 18 1 1.6305 -8.4311 1.9456 19 6 0.3640 -9.5732 0.6204 20 6 0.8553 -10.8558 1.2884 21 6 2.2773 -11.1501 0.8883 22 6 2.7519 -12.4403 1.0886 23 6 4.0466 -12.7718 0.7475 24 6 4.8800 -11.8126 0.2025 25 6 4.4103 -10.5315 0.0013 26 6 3.1059 -10.1963 0.3416 27 6 2.6550 -8.7823 0.0829 28 6 1.8123 -3.6437 0.3008 29 1 -0.4850 0.8400 0.0004 30 1 -0.3114 -1.5539 -1.3476 31 1 -1.4587 -3.6998 -1.6722 32 1 2.4355 -6.0565 1.0121 33 1 -0.5996 -9.2859 1.0414 34 1 0.2630 -9.7337 -0.4530 35 1 0.8031 -10.7400 2.3709 36 1 0.2179 -11.6862 0.9847 37 1 2.1016 -13.1900 1.5144 38 1 4.4082 -13.7771 0.9058 39 1 5.8953 -12.0657 -0.0651 40 1 5.0620 -9.7827 -0.4241 41 1 2.4470 -8.6605 -0.9802 42 1 3.4471 -8.0928 0.3748 43 1 2.7338 -3.6673 0.8636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584176088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:44 Heat of formation + Delta-G solvation = -7.292120 kcal Electronic energy + Delta-G solvation = -25557.393871 eV Core-core repulsion = 21951.584898 eV Total energy + Delta-G solvation = -3605.808973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67447 -40.64639 -39.53516 -36.75574 -36.21114 -35.33963 -33.51690 -32.60340 -31.48083 -30.44039 -29.52505 -27.92758 -25.54091 -24.34377 -23.69448 -23.11679 -22.96087 -21.32911 -20.23096 -19.65965 -18.27835 -17.73678 -17.24561 -16.86450 -16.78306 -16.17525 -15.99778 -15.68966 -15.58791 -15.36667 -15.10405 -14.75729 -14.64276 -14.36001 -14.20719 -14.00047 -13.80951 -13.48091 -13.17531 -12.98449 -12.88196 -12.85118 -12.42073 -12.31586 -12.11101 -11.98523 -11.82689 -11.70028 -11.47054 -11.35914 -11.21333 -10.83852 -9.97813 -9.62482 -9.60709 -9.42184 -8.88003 -8.60249 -6.59807 0.49452 0.52209 0.74302 0.94844 1.40676 1.52756 1.56362 1.87950 2.11427 2.20716 2.81744 2.88606 3.42515 3.62141 3.72613 3.80711 4.00889 4.05881 4.08212 4.21104 4.27266 4.37978 4.41105 4.55757 4.60576 4.72859 4.73994 4.82945 4.89328 4.90282 4.92736 4.99171 5.03360 5.11524 5.18581 5.24790 5.26582 5.34740 5.46472 5.63642 5.64762 5.68051 5.78721 5.95765 6.11833 6.18056 6.44020 6.61888 6.78922 6.82093 7.30751 7.82860 8.28047 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025794 B = 0.002416 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.266536 B =11587.137322 C =12403.266336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.480 4.480 8 H 0.087 0.913 9 C 0.115 3.885 10 C -0.242 4.242 11 C 0.096 3.904 12 N -0.578 5.578 13 C 0.346 3.654 14 N -0.650 5.650 15 C 0.502 3.498 16 O -0.526 6.526 17 C -0.091 4.091 18 H 0.122 0.878 19 C -0.097 4.097 20 C -0.073 4.073 21 C -0.088 4.088 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.087 4.087 27 C -0.066 4.066 28 C -0.311 4.311 29 H 0.291 0.709 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.425 0.575 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 -19.279 3.948 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.184 4.184 3 Si 0.813 3.187 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.511 4.511 8 H 0.106 0.894 9 C 0.107 3.893 10 C -0.266 4.266 11 C -0.055 4.055 12 N -0.299 5.299 13 C 0.118 3.882 14 N -0.298 5.298 15 C 0.289 3.711 16 O -0.398 6.398 17 C -0.112 4.112 18 H 0.140 0.860 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.088 4.088 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.087 4.087 27 C -0.103 4.103 28 C -0.336 4.336 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.156 0.844 32 H 0.263 0.737 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.954 -19.974 3.475 21.778 hybrid contribution 0.743 1.828 0.124 1.977 sum 8.697 -18.145 3.599 20.441 Atomic orbital electron populations 1.69820 1.09181 1.30837 1.34861 1.26923 0.95645 1.04935 0.90876 0.84989 0.79367 0.75437 0.78900 1.17674 1.18961 1.19089 1.19911 0.96280 0.90717 1.44181 0.89443 1.18038 0.91380 0.92959 0.86920 1.22283 1.00452 0.97996 1.05832 1.22178 0.98433 0.87927 0.97005 1.67298 1.14169 1.30431 1.17959 1.18314 0.91234 0.85475 0.93190 1.43510 1.22956 1.05640 1.57690 1.21508 0.85385 0.86135 0.78106 1.90761 1.20194 1.86475 1.42391 1.21327 0.97157 0.89764 1.02943 0.86004 1.21325 0.97594 0.93466 1.01112 1.20489 0.91997 0.97213 1.01285 1.19838 0.96046 0.93728 0.99168 1.21408 0.96710 0.95821 1.00595 1.21395 0.93943 1.00360 0.98826 1.21353 1.00790 0.93124 0.99529 1.21366 0.95124 0.97741 1.00494 1.19570 0.94372 0.94752 1.00047 1.20376 0.95876 0.94268 0.99791 1.21437 1.05948 0.92125 1.14116 0.89819 0.86143 0.84436 0.73669 0.91416 0.92659 0.89049 0.89067 0.84381 0.84033 0.84262 0.85136 0.91565 0.88571 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.89 10.70 21.84 0.23 -41.66 16 2 C 0.03 1.56 5.31 85.29 0.45 2.02 16 3 Si 0.99 36.36 29.57 68.60 2.03 38.39 16 4 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.48 -24.81 9.13 23.52 0.21 -24.59 16 8 H 0.09 4.25 7.87 -2.91 -0.02 4.22 16 9 C 0.12 6.19 5.60 -21.11 -0.12 6.07 16 10 C -0.24 -13.09 8.77 22.84 0.20 -12.89 16 11 C 0.10 4.97 11.15 84.50 0.94 5.91 16 12 N -0.58 -30.36 7.88 -193.54 -1.53 -31.89 16 13 C 0.35 16.35 7.40 132.76 0.98 17.33 16 14 N -0.65 -23.34 5.28 -308.66 -1.63 -24.97 16 15 C 0.50 17.77 7.09 87.66 0.62 18.40 16 16 O -0.53 -24.04 14.14 -3.04 -0.04 -24.08 16 17 C -0.09 -2.17 2.55 -11.52 -0.03 -2.20 16 18 H 0.12 2.36 8.10 -2.39 -0.02 2.34 16 19 C -0.10 -2.28 4.71 30.61 0.14 -2.14 16 20 C -0.07 -1.24 5.67 29.74 0.17 -1.08 16 21 C -0.09 -1.62 5.74 -19.86 -0.11 -1.73 16 22 C -0.13 -1.98 9.61 22.36 0.21 -1.76 16 23 C -0.13 -1.82 10.05 22.20 0.22 -1.59 16 24 C -0.13 -1.97 10.05 22.20 0.22 -1.75 16 25 C -0.13 -2.27 9.61 22.36 0.21 -2.06 16 26 C -0.09 -1.72 5.74 -19.85 -0.11 -1.84 16 27 C -0.07 -1.39 4.88 29.74 0.15 -1.24 16 28 C -0.31 -14.97 9.73 22.99 0.22 -14.75 16 29 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 30 H 0.12 6.66 6.11 -2.91 -0.02 6.64 16 31 H 0.14 6.46 8.06 -2.91 -0.02 6.44 16 32 H 0.42 11.38 8.54 -92.70 -0.79 10.59 16 33 H 0.07 1.76 7.81 -2.38 -0.02 1.74 16 34 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 37 H 0.14 1.54 8.05 -2.91 -0.02 1.52 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.13 1.95 8.05 -2.91 -0.02 1.92 16 41 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 42 H 0.10 1.68 7.98 -2.39 -0.02 1.66 16 43 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -70.36 357.21 3.90 -66.46 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.24 Total: 37.64 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 4.60 Total: -19.89 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -2.92 Total: -98.52 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.04 Total: -24.08 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Total: -70.36 3.90 -66.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584176088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.166 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds