Wall clock time and date at job start Tue Mar 31 2020 13:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48501 * 109.46792 * 239.99923 * 3 2 1 5 5 H 1.48507 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47537 * 119.99401 * 3 2 1 7 7 C 1.40033 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00069 * 170.13633 * 7 2 1 9 9 C 1.41539 * 119.99842 * 350.13270 * 7 2 1 10 10 C 1.41173 * 120.99786 * 331.72766 * 9 7 2 11 11 C 1.37588 * 119.01285 * 179.97438 * 10 9 7 12 12 N 1.32081 * 121.11293 * 359.73091 * 11 10 9 13 13 C 1.32475 * 122.22909 * 0.56411 * 12 11 10 14 14 N 1.39465 * 119.57859 * 179.70480 * 13 12 11 15 15 C 1.34781 * 120.00315 * 354.33093 * 14 13 12 16 16 O 1.21277 * 119.99914 * 4.72985 * 15 14 13 17 17 C 1.50697 * 119.99905 * 184.73026 * 15 14 13 18 18 H 1.09004 * 109.68205 * 300.51590 * 17 15 14 19 19 C 1.53330 * 109.68327 * 180.02562 * 17 15 14 20 20 C 1.52726 * 108.40244 * 170.41263 * 19 17 15 21 21 C 1.50632 * 110.59612 * 51.04948 * 20 19 17 22 22 C 1.38914 * 117.75440 * 162.33035 * 21 20 19 23 23 C 1.37931 * 120.54768 * 179.74418 * 22 21 20 24 24 C 1.38266 * 119.76888 * 359.97347 * 23 22 21 25 25 C 1.37933 * 119.77481 * 0.12409 * 24 23 22 26 26 C 1.37664 * 122.56787 * 342.28090 * 21 20 19 27 27 C 1.50635 * 122.56290 * 0.72343 * 26 21 20 28 28 C 1.38599 * 120.83833 * 359.43763 * 13 12 11 29 29 H 0.97002 * 120.00361 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.49503 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.44375 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00192 * 174.05128 * 14 13 12 33 33 H 1.09000 * 109.67636 * 290.14523 * 19 17 15 34 34 H 1.09007 * 109.67881 * 50.64632 * 19 17 15 35 35 H 1.08997 * 109.25149 * 171.33913 * 20 19 17 36 36 H 1.08999 * 109.24898 * 290.76307 * 20 19 17 37 37 H 1.08004 * 119.72702 * 359.71230 * 22 21 20 38 38 H 1.07998 * 120.11486 * 179.97438 * 23 22 21 39 39 H 1.08006 * 120.11282 * 180.15096 * 24 23 22 40 40 H 1.07999 * 119.73147 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.26224 * 221.88559 * 27 26 21 42 42 H 1.09000 * 109.24707 * 102.44767 * 27 26 21 43 43 H 1.08000 * 120.59916 * 180.25403 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6966 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0756 -1.2197 -0.1597 9 6 1.3156 -2.4293 0.2111 10 6 0.1290 -2.4680 0.9751 11 6 -0.5108 -3.6729 1.1534 12 7 -0.0359 -4.7835 0.6190 13 6 1.0759 -4.8019 -0.1010 14 7 1.5308 -6.0075 -0.6344 15 6 0.9063 -7.1606 -0.3230 16 8 -0.1016 -7.1414 0.3512 17 6 1.4606 -8.4737 -0.8124 18 1 1.4957 -8.4740 -1.9019 19 6 0.5712 -9.6235 -0.3247 20 6 1.0127 -10.9058 -1.0272 21 6 2.5002 -11.0997 -0.8903 22 6 3.0120 -12.3685 -1.1314 23 6 4.3662 -12.6094 -1.0278 24 6 5.2221 -11.5802 -0.6817 25 6 4.7157 -10.3202 -0.4399 26 6 3.3519 -10.0762 -0.5410 27 6 2.8658 -8.6803 -0.2509 28 6 1.7898 -3.6373 -0.3354 29 1 -0.4851 0.8400 -0.0004 30 1 -0.2709 -1.5652 1.4123 31 1 -1.4189 -3.7106 1.7370 32 1 2.2941 -6.0157 -1.2329 33 1 0.6798 -9.7396 0.7536 34 1 -0.4699 -9.4109 -0.5679 35 1 0.4968 -11.7559 -0.5808 36 1 0.7541 -10.8438 -2.0842 37 1 2.3441 -13.1730 -1.4017 38 1 4.7565 -13.5986 -1.2163 39 1 6.2837 -11.7621 -0.6013 40 1 5.3849 -9.5166 -0.1700 41 1 3.5450 -7.9607 -0.7082 42 1 2.8488 -8.5226 0.8275 43 1 2.6936 -3.6560 -0.9264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584176089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:48 Heat of formation + Delta-G solvation = 8.633698 kcal Electronic energy + Delta-G solvation = -25558.500551 eV Core-core repulsion = 21953.382173 eV Total energy + Delta-G solvation = -3605.118378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52890 -39.38989 -37.90317 -35.75128 -34.46752 -33.60734 -32.70969 -30.69028 -30.53724 -29.27470 -28.20890 -25.99450 -24.48805 -23.35012 -22.32334 -21.85234 -21.55549 -19.98632 -19.13533 -17.88826 -16.93100 -16.54670 -15.88278 -15.83099 -15.13919 -15.06358 -14.59018 -14.31457 -14.21514 -14.05382 -13.99016 -13.64308 -13.30845 -13.10599 -12.95134 -12.79530 -12.38630 -12.20594 -12.11945 -11.62076 -11.57651 -11.40124 -11.24629 -11.07303 -10.97982 -10.88267 -10.51444 -10.39717 -10.02511 -9.73868 -9.40166 -9.28255 -8.92629 -8.70938 -8.01803 -7.73167 -7.03022 -6.77429 -4.63437 1.19500 1.20057 2.55267 2.76597 3.01426 3.03700 3.16360 3.44628 3.54899 3.59125 3.85880 4.42397 4.51138 4.68234 4.76862 4.77457 4.84261 4.95545 4.99437 5.14363 5.25052 5.35882 5.38650 5.52261 5.62037 5.67299 5.71898 5.77685 5.86057 5.92063 6.01874 6.10814 6.25887 6.33742 6.34086 6.51328 6.57365 6.59064 6.76877 6.84891 6.91282 7.13097 7.38624 7.49365 7.79187 7.89229 8.18243 8.45349 8.67703 8.74367 8.85201 9.67819 10.11024 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.002443 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.550405 B =11459.523575 C =12386.957701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.146 3.854 10 C -0.219 4.219 11 C 0.102 3.898 12 N -0.551 5.551 13 C 0.347 3.653 14 N -0.661 5.661 15 C 0.502 3.498 16 O -0.476 6.476 17 C -0.106 4.106 18 H 0.097 0.903 19 C -0.099 4.099 20 C -0.082 4.082 21 C -0.074 4.074 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.071 4.071 27 C -0.072 4.072 28 C -0.301 4.301 29 H 0.283 0.717 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.405 0.595 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -18.011 -3.447 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.098 0.902 9 C 0.138 3.862 10 C -0.242 4.242 11 C -0.050 4.050 12 N -0.271 5.271 13 C 0.119 3.881 14 N -0.307 5.307 15 C 0.287 3.713 16 O -0.345 6.345 17 C -0.127 4.127 18 H 0.115 0.885 19 C -0.136 4.136 20 C -0.118 4.118 21 C -0.074 4.074 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.071 4.071 27 C -0.110 4.110 28 C -0.327 4.327 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.240 0.760 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.050 -18.695 -2.799 19.848 hybrid contribution 1.365 1.609 -0.606 2.196 sum 7.415 -17.085 -3.405 18.934 Atomic orbital electron populations 1.69741 1.07556 1.29508 1.35052 1.25945 0.94872 1.01421 0.92054 0.86253 0.79966 0.79842 0.79985 1.18944 1.20229 1.18764 1.19507 0.95739 0.90016 1.43708 0.90208 1.17593 0.90712 0.91504 0.86421 1.22257 1.00011 0.97917 1.04022 1.21923 0.97924 0.88100 0.97018 1.67232 1.13330 1.30367 1.16150 1.18037 0.91953 0.83800 0.94297 1.43508 1.33385 1.05383 1.48412 1.20550 0.84672 0.84754 0.81367 1.90786 1.22334 1.86364 1.35055 1.21359 0.96039 0.93394 1.01953 0.88522 1.21362 0.99629 0.91800 1.00858 1.20533 0.91213 0.98701 1.01397 1.19690 0.95649 0.92917 0.99168 1.21153 0.95497 0.96403 1.00896 1.21049 0.93629 0.99018 1.00583 1.21051 0.99636 0.93192 1.00360 1.21180 0.94699 0.97320 1.00438 1.19571 0.93141 0.94981 0.99385 1.20445 0.94874 0.93413 1.02221 1.21255 1.05372 0.92843 1.13193 0.90605 0.85384 0.85885 0.76027 0.90953 0.90097 0.90415 0.90459 0.86257 0.86299 0.86210 0.86018 0.90085 0.89824 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.00 10.83 55.55 0.60 -19.40 16 2 C 0.08 1.84 5.30 -17.34 -0.09 1.75 16 3 Si 0.92 18.06 29.57 -169.99 -5.03 13.03 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.74 9.12 -37.65 -0.34 -12.09 16 8 H 0.08 1.94 7.87 -52.49 -0.41 1.52 16 9 C 0.15 3.83 5.58 -106.55 -0.59 3.24 16 10 C -0.22 -5.70 8.76 -38.71 -0.34 -6.03 16 11 C 0.10 2.54 11.15 -17.68 -0.20 2.34 16 12 N -0.55 -14.09 7.85 -12.52 -0.10 -14.18 16 13 C 0.35 8.08 7.41 -154.70 -1.15 6.93 16 14 N -0.66 -11.97 5.29 -11.49 -0.06 -12.03 16 15 C 0.50 8.86 7.09 -10.99 -0.08 8.78 16 16 O -0.48 -10.55 14.11 5.56 0.08 -10.47 16 17 C -0.11 -1.31 2.55 -91.74 -0.23 -1.55 16 18 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 19 C -0.10 -1.17 4.71 -26.70 -0.13 -1.30 16 20 C -0.08 -0.77 5.67 -28.06 -0.16 -0.93 16 21 C -0.07 -0.76 5.74 -104.61 -0.60 -1.36 16 22 C -0.12 -1.11 9.61 -39.44 -0.38 -1.49 16 23 C -0.12 -1.07 10.05 -39.68 -0.40 -1.47 16 24 C -0.12 -1.10 10.05 -39.68 -0.40 -1.50 16 25 C -0.12 -1.15 9.61 -39.45 -0.38 -1.53 16 26 C -0.07 -0.75 5.74 -104.62 -0.60 -1.35 16 27 C -0.07 -0.80 4.89 -28.05 -0.14 -0.94 16 28 C -0.30 -7.18 9.73 -38.48 -0.37 -7.55 16 29 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 30 H 0.13 3.37 6.27 -52.49 -0.33 3.05 16 31 H 0.12 2.77 8.06 -52.48 -0.42 2.35 16 32 H 0.41 5.71 8.59 -40.82 -0.35 5.36 16 33 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 34 H 0.08 1.04 7.82 -51.92 -0.41 0.63 16 35 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.12 0.86 8.05 -52.48 -0.42 0.44 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.12 1.01 8.05 -52.49 -0.42 0.59 16 41 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 42 H 0.08 1.02 8.11 -51.93 -0.42 0.59 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -31.63 357.50 -11.39 -43.02 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.69 Total: 10.68 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -6.58 Total: -16.04 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.44 Total: -45.61 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.63 -11.39 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584176089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.656 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds