Wall clock time and date at job start Tue Mar 31 2020 13:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48501 * 109.46792 * 239.99923 * 3 2 1 5 5 H 1.48507 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47537 * 119.99401 * 3 2 1 7 7 C 1.40033 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00069 * 170.13633 * 7 2 1 9 9 C 1.41539 * 119.99842 * 350.13270 * 7 2 1 10 10 C 1.41173 * 120.99786 * 331.72766 * 9 7 2 11 11 C 1.37588 * 119.01285 * 179.97438 * 10 9 7 12 12 N 1.32081 * 121.11293 * 359.73091 * 11 10 9 13 13 C 1.32475 * 122.22909 * 0.56411 * 12 11 10 14 14 N 1.39465 * 119.57859 * 179.70480 * 13 12 11 15 15 C 1.34781 * 120.00315 * 354.33093 * 14 13 12 16 16 O 1.21277 * 119.99914 * 4.72985 * 15 14 13 17 17 C 1.50697 * 119.99905 * 184.73026 * 15 14 13 18 18 H 1.09004 * 109.68205 * 300.51590 * 17 15 14 19 19 C 1.53330 * 109.68327 * 180.02562 * 17 15 14 20 20 C 1.52726 * 108.40244 * 170.41263 * 19 17 15 21 21 C 1.50632 * 110.59612 * 51.04948 * 20 19 17 22 22 C 1.38914 * 117.75440 * 162.33035 * 21 20 19 23 23 C 1.37931 * 120.54768 * 179.74418 * 22 21 20 24 24 C 1.38266 * 119.76888 * 359.97347 * 23 22 21 25 25 C 1.37933 * 119.77481 * 0.12409 * 24 23 22 26 26 C 1.37664 * 122.56787 * 342.28090 * 21 20 19 27 27 C 1.50635 * 122.56290 * 0.72343 * 26 21 20 28 28 C 1.38599 * 120.83833 * 359.43763 * 13 12 11 29 29 H 0.97002 * 120.00361 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.49503 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.44375 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00192 * 174.05128 * 14 13 12 33 33 H 1.09000 * 109.67636 * 290.14523 * 19 17 15 34 34 H 1.09007 * 109.67881 * 50.64632 * 19 17 15 35 35 H 1.08997 * 109.25149 * 171.33913 * 20 19 17 36 36 H 1.08999 * 109.24898 * 290.76307 * 20 19 17 37 37 H 1.08004 * 119.72702 * 359.71230 * 22 21 20 38 38 H 1.07998 * 120.11486 * 179.97438 * 23 22 21 39 39 H 1.08006 * 120.11282 * 180.15096 * 24 23 22 40 40 H 1.07999 * 119.73147 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.26224 * 221.88559 * 27 26 21 42 42 H 1.09000 * 109.24707 * 102.44767 * 27 26 21 43 43 H 1.08000 * 120.59916 * 180.25403 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6966 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0756 -1.2197 -0.1597 9 6 1.3156 -2.4293 0.2111 10 6 0.1290 -2.4680 0.9751 11 6 -0.5108 -3.6729 1.1534 12 7 -0.0359 -4.7835 0.6190 13 6 1.0759 -4.8019 -0.1010 14 7 1.5308 -6.0075 -0.6344 15 6 0.9063 -7.1606 -0.3230 16 8 -0.1016 -7.1414 0.3512 17 6 1.4606 -8.4737 -0.8124 18 1 1.4957 -8.4740 -1.9019 19 6 0.5712 -9.6235 -0.3247 20 6 1.0127 -10.9058 -1.0272 21 6 2.5002 -11.0997 -0.8903 22 6 3.0120 -12.3685 -1.1314 23 6 4.3662 -12.6094 -1.0278 24 6 5.2221 -11.5802 -0.6817 25 6 4.7157 -10.3202 -0.4399 26 6 3.3519 -10.0762 -0.5410 27 6 2.8658 -8.6803 -0.2509 28 6 1.7898 -3.6373 -0.3354 29 1 -0.4851 0.8400 -0.0004 30 1 -0.2709 -1.5652 1.4123 31 1 -1.4189 -3.7106 1.7370 32 1 2.2941 -6.0157 -1.2329 33 1 0.6798 -9.7396 0.7536 34 1 -0.4699 -9.4109 -0.5679 35 1 0.4968 -11.7559 -0.5808 36 1 0.7541 -10.8438 -2.0842 37 1 2.3441 -13.1730 -1.4017 38 1 4.7565 -13.5986 -1.2163 39 1 6.2837 -11.7621 -0.6013 40 1 5.3849 -9.5166 -0.1700 41 1 3.5450 -7.9607 -0.7082 42 1 2.8488 -8.5226 0.8275 43 1 2.6936 -3.6560 -0.9264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584176089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:47 Heat of formation + Delta-G solvation = -7.156485 kcal Electronic energy + Delta-G solvation = -25559.185264 eV Core-core repulsion = 21953.382173 eV Total energy + Delta-G solvation = -3605.803091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67438 -40.64812 -39.53553 -36.75296 -36.19675 -35.33718 -33.51665 -32.60346 -31.48179 -30.44491 -29.52885 -27.91563 -25.54119 -24.34265 -23.69469 -23.11769 -22.96159 -21.32614 -20.23590 -19.65110 -18.27068 -17.72556 -17.24517 -16.85324 -16.78149 -16.15479 -16.00989 -15.72928 -15.60680 -15.35117 -15.10374 -14.74652 -14.64266 -14.35665 -14.20504 -13.99987 -13.80919 -13.47628 -13.18896 -12.97733 -12.87968 -12.82505 -12.42054 -12.31442 -12.11859 -11.98971 -11.87743 -11.70429 -11.46358 -11.35894 -11.18281 -10.83946 -9.96941 -9.61541 -9.60202 -9.42121 -8.87028 -8.61750 -6.59387 0.49501 0.52253 0.73979 0.96179 1.40631 1.52901 1.55061 1.87649 2.11198 2.20959 2.81997 2.88654 3.42726 3.62198 3.71664 3.81464 4.00414 4.06038 4.08339 4.20998 4.27346 4.38033 4.41178 4.55807 4.60762 4.72295 4.74089 4.82568 4.89337 4.90306 4.92480 4.99120 5.02987 5.11673 5.18639 5.23856 5.26607 5.34812 5.45532 5.63297 5.64625 5.68107 5.78780 5.94815 6.12013 6.18111 6.43892 6.61268 6.78890 6.82097 7.30653 7.82366 8.29121 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.002443 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.550405 B =11459.523575 C =12386.957701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.485 4.485 8 H 0.088 0.912 9 C 0.118 3.882 10 C -0.239 4.239 11 C 0.096 3.904 12 N -0.576 5.576 13 C 0.346 3.654 14 N -0.650 5.650 15 C 0.501 3.499 16 O -0.524 6.524 17 C -0.091 4.091 18 H 0.122 0.878 19 C -0.097 4.097 20 C -0.073 4.073 21 C -0.088 4.088 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.087 4.087 27 C -0.066 4.066 28 C -0.309 4.309 29 H 0.291 0.709 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.425 0.575 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.485 -19.088 -4.773 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.182 4.182 3 Si 0.812 3.188 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.515 4.515 8 H 0.106 0.894 9 C 0.109 3.891 10 C -0.263 4.263 11 C -0.056 4.056 12 N -0.297 5.297 13 C 0.117 3.883 14 N -0.298 5.298 15 C 0.288 3.712 16 O -0.397 6.397 17 C -0.112 4.112 18 H 0.140 0.860 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.088 4.088 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.087 4.087 27 C -0.103 4.103 28 C -0.335 4.335 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.263 0.737 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.086 -19.811 -4.154 21.797 hybrid contribution 0.734 1.851 -0.193 2.001 sum 8.820 -17.960 -4.347 20.475 Atomic orbital electron populations 1.69811 1.09158 1.30972 1.34905 1.26895 0.95631 1.04837 0.90879 0.85101 0.78559 0.74926 0.80229 1.18048 1.19378 1.18278 1.19842 0.96289 0.90742 1.44661 0.89435 1.18016 0.91193 0.92921 0.86929 1.22209 1.00938 0.97805 1.05326 1.22187 0.98404 0.87949 0.97012 1.67341 1.14607 1.30433 1.17279 1.18335 0.91105 0.85548 0.93294 1.43516 1.33886 1.04081 1.48291 1.21512 0.83753 0.85915 0.80025 1.90764 1.24616 1.87117 1.37182 1.21328 0.96691 0.90013 1.03156 0.86042 1.21326 0.98882 0.93092 1.00198 1.20486 0.91128 0.97450 1.01918 1.19838 0.95782 0.93468 0.99693 1.21409 0.96227 0.96385 1.00520 1.21395 0.93498 1.00046 0.99588 1.21358 1.00860 0.92864 0.99722 1.21368 0.94514 0.98256 1.00585 1.19566 0.93825 0.94580 1.00768 1.20375 0.94031 0.94729 1.01192 1.21457 1.06210 0.92421 1.13401 0.89830 0.86513 0.84388 0.73677 0.92646 0.91411 0.89065 0.89068 0.84385 0.84040 0.84268 0.85128 0.88563 0.91527 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.05 10.83 21.84 0.24 -41.81 16 2 C 0.03 1.63 5.30 85.29 0.45 2.09 16 3 Si 0.99 36.41 29.57 68.60 2.03 38.44 16 4 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.48 -25.04 9.12 23.52 0.21 -24.83 16 8 H 0.09 4.23 7.87 -2.91 -0.02 4.21 16 9 C 0.12 6.31 5.58 -21.11 -0.12 6.20 16 10 C -0.24 -12.92 8.76 22.84 0.20 -12.72 16 11 C 0.10 4.96 11.15 84.50 0.94 5.90 16 12 N -0.58 -30.21 7.85 -193.53 -1.52 -31.73 16 13 C 0.35 16.28 7.41 132.75 0.98 17.27 16 14 N -0.65 -23.27 5.29 -308.66 -1.63 -24.90 16 15 C 0.50 17.67 7.09 87.66 0.62 18.30 16 16 O -0.52 -23.85 14.11 -3.02 -0.04 -23.89 16 17 C -0.09 -2.16 2.55 -11.52 -0.03 -2.19 16 18 H 0.12 2.35 8.10 -2.38 -0.02 2.33 16 19 C -0.10 -2.27 4.71 30.61 0.14 -2.13 16 20 C -0.07 -1.24 5.67 29.74 0.17 -1.07 16 21 C -0.09 -1.61 5.74 -19.86 -0.11 -1.73 16 22 C -0.13 -1.97 9.61 22.36 0.21 -1.76 16 23 C -0.13 -1.82 10.05 22.20 0.22 -1.59 16 24 C -0.13 -1.97 10.05 22.20 0.22 -1.75 16 25 C -0.13 -2.27 9.61 22.36 0.21 -2.06 16 26 C -0.09 -1.72 5.74 -19.86 -0.11 -1.83 16 27 C -0.07 -1.39 4.89 29.74 0.15 -1.24 16 28 C -0.31 -14.88 9.73 22.99 0.22 -14.65 16 29 H 0.29 13.44 8.29 -92.71 -0.77 12.67 16 30 H 0.12 6.44 6.27 -2.91 -0.02 6.42 16 31 H 0.14 6.46 8.06 -2.91 -0.02 6.44 16 32 H 0.42 11.37 8.59 -92.71 -0.80 10.57 16 33 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 34 H 0.07 1.76 7.82 -2.38 -0.02 1.74 16 35 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.14 1.54 8.05 -2.91 -0.02 1.52 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.13 1.94 8.05 -2.91 -0.02 1.92 16 41 H 0.10 1.68 8.02 -2.39 -0.02 1.66 16 42 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 43 H 0.12 5.22 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -70.15 357.50 3.91 -66.24 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.24 Total: 37.45 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.60 Total: -19.79 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -2.92 Total: -98.44 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.04 Total: -23.89 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -70.15 3.91 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584176089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.086 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds