Wall clock time and date at job start Tue Mar 31 2020 13:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86801 * 120.00234 * 2 1 4 4 H 1.48504 * 109.47363 * 275.15377 * 3 2 1 5 5 H 1.48506 * 109.46696 * 35.15019 * 3 2 1 6 6 H 1.48499 * 109.47317 * 155.14707 * 3 2 1 7 7 C 1.39976 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99813 * 347.87057 * 7 2 1 9 9 C 1.41043 * 119.99988 * 167.86730 * 7 2 1 10 10 C 1.40741 * 120.30751 * 330.83500 * 9 7 2 11 11 C 1.36448 * 119.95051 * 180.02562 * 10 9 7 12 12 C 1.38881 * 120.58511 * 359.72227 * 11 10 9 13 13 C 1.38203 * 120.62007 * 0.56108 * 12 11 10 14 14 C 1.38692 * 120.02835 * 359.43952 * 13 12 11 15 15 N 1.38993 * 120.28733 * 180.29900 * 14 13 12 16 16 C 1.34771 * 119.99953 * 20.01130 * 15 14 13 17 17 O 1.21534 * 119.99982 * 5.38147 * 16 15 14 18 18 C 1.48109 * 120.00130 * 185.38184 * 16 15 14 19 19 C 1.39358 * 119.80955 * 179.72693 * 18 16 15 20 20 C 1.38342 * 118.73545 * 179.84660 * 19 18 16 21 21 C 1.39171 * 118.97154 * 0.57349 * 20 19 18 22 22 C 1.38019 * 119.33924 * 359.51408 * 21 20 19 23 23 N 1.32356 * 120.22254 * 0.23853 * 22 21 20 24 24 C 1.50747 * 122.29205 * 180.48876 * 22 21 20 25 25 C 1.52709 * 110.56883 * 342.08132 * 24 22 21 26 26 C 1.53317 * 108.44153 * 51.36774 * 25 24 22 27 27 C 1.50530 * 117.89547 * 179.34729 * 21 20 19 28 28 H 0.97000 * 120.00386 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.02376 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.71255 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.69624 * 180.27587 * 12 11 10 32 32 H 1.07996 * 119.98793 * 179.72111 * 13 12 11 33 33 H 0.96996 * 119.99955 * 200.01388 * 15 14 13 34 34 H 1.07998 * 120.63576 * 0.09685 * 19 18 16 35 35 H 1.07996 * 120.51475 * 180.27445 * 20 19 18 36 36 H 1.08997 * 109.25778 * 102.37138 * 24 22 21 37 37 H 1.09003 * 109.25260 * 221.83825 * 24 22 21 38 38 H 1.09006 * 109.64176 * 171.04979 * 25 24 22 39 39 H 1.09004 * 109.64388 * 291.67794 * 25 24 22 40 40 H 1.08998 * 109.68729 * 49.73153 * 26 25 24 41 41 H 1.09005 * 109.68592 * 170.29359 * 26 25 24 42 42 H 1.08994 * 109.26066 * 42.32618 * 27 21 20 43 43 H 1.09002 * 109.26160 * 282.87664 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3811 2.1093 -1.3944 5 1 1.4985 2.6188 0.8061 6 1 3.5901 1.4112 0.5884 7 6 2.0082 -1.2122 -0.0005 8 1 1.4863 -2.1371 0.1956 9 6 3.3950 -1.2257 -0.2573 10 6 3.9753 -0.2394 -1.0765 11 6 5.3177 -0.2597 -1.3205 12 6 6.1226 -1.2442 -0.7621 13 6 5.5770 -2.2276 0.0411 14 6 4.2157 -2.2314 0.3061 15 7 3.6623 -3.2143 1.1182 16 6 4.4474 -3.9102 1.9642 17 8 5.6194 -3.6135 2.0887 18 6 3.8821 -5.0367 2.7421 19 6 4.6989 -5.7572 3.6114 20 6 4.1470 -6.8030 4.3294 21 6 2.8007 -7.1070 4.1506 22 6 2.0483 -6.3542 3.2719 23 7 2.6050 -5.3566 2.6035 24 6 0.5831 -6.6181 3.0354 25 6 0.2057 -8.0178 3.5154 26 6 0.7031 -8.1871 4.9558 27 6 2.2289 -8.2590 4.9328 28 1 -0.4851 0.8400 0.0004 29 1 3.3584 0.5326 -1.5124 30 1 5.7589 0.4989 -1.9500 31 1 7.1840 -1.2440 -0.9612 32 1 6.2117 -2.9909 0.4664 33 1 2.7111 -3.3994 1.0761 34 1 5.7419 -5.5015 3.7255 35 1 4.7526 -7.3777 5.0144 36 1 -0.0073 -5.8803 3.5786 37 1 0.3703 -6.5346 1.9696 38 1 -0.8775 -8.1357 3.4856 39 1 0.6763 -8.7640 2.8752 40 1 0.3846 -7.3353 5.5567 41 1 0.2985 -9.1069 5.3782 42 1 2.6059 -8.2220 5.9548 43 1 2.5376 -9.1963 4.4700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584553307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:49 Heat of formation + Delta-G solvation = 11.773259 kcal Electronic energy + Delta-G solvation = -26152.320873 eV Core-core repulsion = 22547.338637 eV Total energy + Delta-G solvation = -3604.982236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88121 -39.49661 -37.51249 -36.43197 -34.08222 -33.61933 -33.32819 -30.84325 -30.44682 -29.89774 -28.54757 -25.44548 -24.75436 -23.59232 -22.75616 -22.21332 -21.03611 -19.98453 -19.52646 -17.62614 -17.39088 -17.01394 -16.35742 -15.84460 -15.21318 -14.99404 -14.66013 -14.38525 -14.21333 -14.10410 -13.97967 -13.55298 -13.43208 -13.29784 -12.94713 -12.91653 -12.43058 -12.30873 -12.17707 -11.88440 -11.65292 -11.23074 -11.17113 -11.04628 -10.88569 -10.84560 -10.49726 -9.98651 -9.82247 -9.76140 -9.68579 -9.43779 -9.34349 -8.83474 -8.76530 -7.62677 -7.03741 -6.96133 -4.46862 0.69939 1.18688 2.42271 2.68735 3.09058 3.13258 3.27420 3.33422 3.63881 3.97392 4.00774 4.10416 4.40324 4.54455 4.55316 4.63432 4.70191 4.90587 5.02199 5.13846 5.24046 5.30225 5.39394 5.44535 5.52292 5.57980 5.66623 5.73169 5.82356 5.89549 6.04696 6.06181 6.08647 6.18963 6.20037 6.37248 6.58172 6.64074 6.73288 6.98535 7.18663 7.34491 7.50432 7.65966 7.84227 7.85742 7.99867 8.26960 8.31650 8.59034 8.71514 8.86627 10.05689 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.003660 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.886847 B = 7648.333280 C = 9103.500077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.085 3.915 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.239 1.239 7 C -0.447 4.447 8 H 0.090 0.910 9 C 0.083 3.917 10 C -0.224 4.224 11 C -0.089 4.089 12 C -0.226 4.226 13 C -0.092 4.092 14 C 0.030 3.970 15 N -0.609 5.609 16 C 0.550 3.450 17 O -0.534 6.534 18 C 0.097 3.903 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.115 4.115 22 C 0.135 3.865 23 N -0.459 5.459 24 C -0.071 4.071 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.076 4.076 28 H 0.286 0.714 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.418 0.582 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 -14.867 9.081 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.163 1.163 7 C -0.476 4.476 8 H 0.108 0.892 9 C 0.078 3.922 10 C -0.244 4.244 11 C -0.108 4.108 12 C -0.246 4.246 13 C -0.112 4.112 14 C -0.065 4.065 15 N -0.250 5.250 16 C 0.336 3.664 17 O -0.413 6.413 18 C -0.044 4.044 19 C -0.140 4.140 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.003 4.003 23 N -0.171 5.171 24 C -0.109 4.109 25 C -0.157 4.157 26 C -0.160 4.160 27 C -0.114 4.114 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.256 0.744 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.503 -14.091 8.593 16.512 hybrid contribution 0.277 0.342 0.485 0.655 sum 0.780 -13.748 9.079 16.494 Atomic orbital electron populations 1.69643 1.07922 1.30256 1.35616 1.26094 0.94822 1.01597 0.90889 0.86302 0.81399 0.79533 0.78722 1.19776 1.22194 1.16250 1.19247 0.91080 0.95578 1.41659 0.89199 1.17464 0.93196 0.90301 0.91206 1.20500 0.95084 1.03217 1.05567 1.20368 0.93871 0.97688 0.98834 1.20340 0.97962 0.99592 1.06682 1.21148 0.93665 0.98890 0.97541 1.17669 0.92531 0.95537 1.00733 1.42815 1.12642 1.33587 1.35914 1.17833 0.86024 0.82423 0.80170 1.90659 1.16303 1.68049 1.66261 1.21177 0.89824 0.96529 0.96872 1.22054 1.01846 0.94878 0.95248 1.21559 0.94423 0.96596 0.98577 1.20658 0.94371 0.98443 0.98282 1.21063 0.96499 0.90670 0.92075 1.67484 1.11838 1.15297 1.22436 1.20404 0.89522 0.97518 1.03443 1.21576 1.01340 0.96441 0.96320 1.21591 0.94650 1.02417 0.97324 1.20444 0.95990 0.95644 0.99319 0.90406 0.88139 0.88825 0.88506 0.85108 0.74368 0.83440 0.84388 0.89499 0.89272 0.90724 0.91455 0.91333 0.91142 0.90465 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.29 13.93 55.55 0.77 -20.51 16 2 C 0.08 2.20 5.48 -17.33 -0.09 2.11 16 3 Si 0.91 21.04 24.36 -169.99 -4.14 16.90 16 4 H -0.27 -6.03 6.78 56.52 0.38 -5.65 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.24 -5.74 6.43 56.52 0.36 -5.37 16 7 C -0.45 -11.83 9.12 -37.87 -0.35 -12.18 16 8 H 0.09 2.43 6.88 -52.49 -0.36 2.07 16 9 C 0.08 2.11 5.20 -106.65 -0.55 1.56 16 10 C -0.22 -5.48 6.82 -39.28 -0.27 -5.75 16 11 C -0.09 -1.99 9.96 -39.99 -0.40 -2.39 16 12 C -0.23 -5.02 10.04 -39.36 -0.39 -5.42 16 13 C -0.09 -2.17 8.77 -39.43 -0.35 -2.52 16 14 C 0.03 0.73 6.53 -83.21 -0.54 0.18 16 15 N -0.61 -13.51 5.19 -10.26 -0.05 -13.56 16 16 C 0.55 11.35 7.65 -12.21 -0.09 11.26 16 17 O -0.53 -11.87 13.24 5.34 0.07 -11.79 16 18 C 0.10 1.68 6.75 -83.16 -0.56 1.11 16 19 C -0.12 -1.69 9.64 -39.13 -0.38 -2.07 16 20 C -0.09 -0.95 9.74 -39.20 -0.38 -1.34 16 21 C -0.12 -1.28 5.75 -104.44 -0.60 -1.88 16 22 C 0.13 1.80 6.62 -82.42 -0.55 1.26 16 23 N -0.46 -7.62 9.38 -6.08 -0.06 -7.68 16 24 C -0.07 -0.77 5.91 -28.01 -0.17 -0.94 16 25 C -0.12 -0.93 5.97 -26.72 -0.16 -1.09 16 26 C -0.12 -0.85 5.98 -26.69 -0.16 -1.01 16 27 C -0.08 -0.58 5.68 -28.09 -0.16 -0.74 16 28 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 29 H 0.10 2.42 4.19 -52.48 -0.22 2.20 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.13 3.03 5.43 -52.49 -0.29 2.75 16 33 H 0.42 9.06 6.50 -40.82 -0.27 8.79 16 34 H 0.15 1.97 7.66 -52.49 -0.40 1.57 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 40 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.49 8.13 -51.93 -0.42 0.06 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -29.90 346.19 -9.71 -39.61 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.37 Total: 11.66 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -6.15 Total: -19.83 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.66 Total: -41.75 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.07 Total: -11.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.14 Total: 16.90 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.90 -9.71 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584553307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.385 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds