Wall clock time and date at job start Tue Mar 31 2020 13:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86801 * 120.00234 * 2 1 4 4 H 1.48504 * 109.47363 * 275.15377 * 3 2 1 5 5 H 1.48506 * 109.46696 * 35.15019 * 3 2 1 6 6 H 1.48499 * 109.47317 * 155.14707 * 3 2 1 7 7 C 1.39976 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99813 * 347.87057 * 7 2 1 9 9 C 1.41043 * 119.99988 * 167.86730 * 7 2 1 10 10 C 1.40741 * 120.30751 * 330.83500 * 9 7 2 11 11 C 1.36448 * 119.95051 * 180.02562 * 10 9 7 12 12 C 1.38881 * 120.58511 * 359.72227 * 11 10 9 13 13 C 1.38203 * 120.62007 * 0.56108 * 12 11 10 14 14 C 1.38692 * 120.02835 * 359.43952 * 13 12 11 15 15 N 1.38993 * 120.28733 * 180.29900 * 14 13 12 16 16 C 1.34771 * 119.99953 * 20.01130 * 15 14 13 17 17 O 1.21534 * 119.99982 * 5.38147 * 16 15 14 18 18 C 1.48109 * 120.00130 * 185.38184 * 16 15 14 19 19 C 1.39358 * 119.80955 * 179.72693 * 18 16 15 20 20 C 1.38342 * 118.73545 * 179.84660 * 19 18 16 21 21 C 1.39171 * 118.97154 * 0.57349 * 20 19 18 22 22 C 1.38019 * 119.33924 * 359.51408 * 21 20 19 23 23 N 1.32356 * 120.22254 * 0.23853 * 22 21 20 24 24 C 1.50747 * 122.29205 * 180.48876 * 22 21 20 25 25 C 1.52709 * 110.56883 * 342.08132 * 24 22 21 26 26 C 1.53317 * 108.44153 * 51.36774 * 25 24 22 27 27 C 1.50530 * 117.89547 * 179.34729 * 21 20 19 28 28 H 0.97000 * 120.00386 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.02376 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.71255 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.69624 * 180.27587 * 12 11 10 32 32 H 1.07996 * 119.98793 * 179.72111 * 13 12 11 33 33 H 0.96996 * 119.99955 * 200.01388 * 15 14 13 34 34 H 1.07998 * 120.63576 * 0.09685 * 19 18 16 35 35 H 1.07996 * 120.51475 * 180.27445 * 20 19 18 36 36 H 1.08997 * 109.25778 * 102.37138 * 24 22 21 37 37 H 1.09003 * 109.25260 * 221.83825 * 24 22 21 38 38 H 1.09006 * 109.64176 * 171.04979 * 25 24 22 39 39 H 1.09004 * 109.64388 * 291.67794 * 25 24 22 40 40 H 1.08998 * 109.68729 * 49.73153 * 26 25 24 41 41 H 1.09005 * 109.68592 * 170.29359 * 26 25 24 42 42 H 1.08994 * 109.26066 * 42.32618 * 27 21 20 43 43 H 1.09002 * 109.26160 * 282.87664 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3811 2.1093 -1.3944 5 1 1.4985 2.6188 0.8061 6 1 3.5901 1.4112 0.5884 7 6 2.0082 -1.2122 -0.0005 8 1 1.4863 -2.1371 0.1956 9 6 3.3950 -1.2257 -0.2573 10 6 3.9753 -0.2394 -1.0765 11 6 5.3177 -0.2597 -1.3205 12 6 6.1226 -1.2442 -0.7621 13 6 5.5770 -2.2276 0.0411 14 6 4.2157 -2.2314 0.3061 15 7 3.6623 -3.2143 1.1182 16 6 4.4474 -3.9102 1.9642 17 8 5.6194 -3.6135 2.0887 18 6 3.8821 -5.0367 2.7421 19 6 4.6989 -5.7572 3.6114 20 6 4.1470 -6.8030 4.3294 21 6 2.8007 -7.1070 4.1506 22 6 2.0483 -6.3542 3.2719 23 7 2.6050 -5.3566 2.6035 24 6 0.5831 -6.6181 3.0354 25 6 0.2057 -8.0178 3.5154 26 6 0.7031 -8.1871 4.9558 27 6 2.2289 -8.2590 4.9328 28 1 -0.4851 0.8400 0.0004 29 1 3.3584 0.5326 -1.5124 30 1 5.7589 0.4989 -1.9500 31 1 7.1840 -1.2440 -0.9612 32 1 6.2117 -2.9909 0.4664 33 1 2.7111 -3.3994 1.0761 34 1 5.7419 -5.5015 3.7255 35 1 4.7526 -7.3777 5.0144 36 1 -0.0073 -5.8803 3.5786 37 1 0.3703 -6.5346 1.9696 38 1 -0.8775 -8.1357 3.4856 39 1 0.6763 -8.7640 2.8752 40 1 0.3846 -7.3353 5.5567 41 1 0.2985 -9.1069 5.3782 42 1 2.6059 -8.2220 5.9548 43 1 2.5376 -9.1963 4.4700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584553307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:48 Heat of formation + Delta-G solvation = -5.335873 kcal Electronic energy + Delta-G solvation = -26153.062781 eV Core-core repulsion = 22547.338637 eV Total energy + Delta-G solvation = -3605.724144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07065 -41.02239 -39.20638 -37.36746 -35.74808 -35.54251 -34.36846 -32.35529 -31.92785 -30.81712 -30.14863 -27.15260 -26.08074 -24.61115 -23.84955 -23.62191 -22.60584 -21.50088 -20.59399 -19.43013 -19.06811 -18.46995 -17.64396 -16.97029 -16.70882 -16.48146 -16.05094 -15.86311 -15.44631 -15.35422 -15.14859 -14.86649 -14.76918 -14.50288 -14.32310 -14.04656 -14.01197 -13.77562 -13.51811 -13.21393 -13.01822 -12.77960 -12.73348 -12.32290 -11.83252 -11.81750 -11.75697 -11.71224 -11.56289 -11.29320 -11.23864 -10.78217 -10.72959 -10.37619 -9.85364 -9.53228 -8.91125 -8.86672 -6.46399 -0.46463 0.17343 0.66671 0.80238 1.24446 1.36325 1.47448 1.73498 2.09744 2.15779 2.61007 2.75439 2.95589 3.47243 3.56001 3.69343 3.81238 3.89609 4.04204 4.08693 4.25616 4.26495 4.39829 4.42786 4.55557 4.62185 4.64875 4.76776 4.80100 4.83379 4.87599 4.93562 5.03828 5.04574 5.17039 5.21682 5.24691 5.29778 5.33728 5.46443 5.52689 5.62742 5.65783 5.86647 5.97507 6.05719 6.33016 6.45248 6.71619 6.74868 6.82807 7.15082 8.16373 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.003660 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.886847 B = 7648.333280 C = 9103.500077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.050 3.950 3 Si 0.963 3.037 4 H -0.254 1.254 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.473 4.473 8 H 0.064 0.936 9 C 0.059 3.941 10 C -0.234 4.234 11 C -0.093 4.093 12 C -0.212 4.212 13 C -0.109 4.109 14 C 0.021 3.979 15 N -0.621 5.621 16 C 0.550 3.450 17 O -0.555 6.555 18 C 0.059 3.941 19 C -0.119 4.119 20 C -0.076 4.076 21 C -0.098 4.098 22 C 0.116 3.884 23 N -0.491 5.491 24 C -0.073 4.073 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.076 4.076 28 H 0.294 0.706 29 H 0.104 0.896 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.416 0.584 34 H 0.152 0.848 35 H 0.184 0.816 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.861 -16.523 10.541 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.165 4.165 3 Si 0.788 3.212 4 H -0.179 1.179 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.503 4.503 8 H 0.082 0.918 9 C 0.055 3.945 10 C -0.254 4.254 11 C -0.112 4.112 12 C -0.231 4.231 13 C -0.129 4.129 14 C -0.073 4.073 15 N -0.261 5.261 16 C 0.338 3.662 17 O -0.435 6.435 18 C -0.080 4.080 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.101 4.101 22 C -0.023 4.023 23 N -0.203 5.203 24 C -0.111 4.111 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.113 4.113 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.253 0.747 34 H 0.170 0.830 35 H 0.201 0.799 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.870 -15.758 10.050 18.783 hybrid contribution -0.059 0.647 0.098 0.657 sum 1.810 -15.110 10.149 18.292 Atomic orbital electron populations 1.69666 1.08794 1.31357 1.37405 1.26697 0.95433 1.03809 0.90533 0.85538 0.79472 0.76684 0.79523 1.17934 1.21028 1.17843 1.19205 0.91870 0.95195 1.44010 0.91814 1.17643 0.93018 0.91528 0.92265 1.20710 0.96338 1.02971 1.05396 1.20756 0.93013 0.98496 0.98899 1.20804 0.99723 0.98147 1.04463 1.21358 0.93287 0.99892 0.98411 1.17997 0.93125 0.95576 1.00647 1.42908 1.12723 1.33865 1.36570 1.18432 0.85678 0.82588 0.79470 1.90603 1.17041 1.68921 1.66920 1.20778 0.90986 0.97171 0.99099 1.22205 1.01749 0.95309 0.94739 1.22040 0.94743 0.95393 0.97993 1.21183 0.94234 0.98182 0.96455 1.21592 0.97706 0.90434 0.92569 1.67356 1.11912 1.17031 1.23977 1.20498 0.88224 0.99767 1.02627 1.21582 1.02381 0.93970 0.97167 1.21619 0.94357 1.03518 0.96314 1.20621 0.96226 0.94433 1.00031 0.89576 0.87831 0.84990 0.85077 0.84968 0.74695 0.83039 0.79903 0.90024 0.90862 0.89296 0.91029 0.91955 0.88469 0.88003 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.27 13.93 21.83 0.30 -45.96 16 2 C 0.05 2.70 5.48 85.26 0.47 3.16 16 3 Si 0.96 43.77 24.36 68.60 1.67 45.44 16 4 H -0.25 -10.73 6.78 99.48 0.67 -10.06 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.25 -12.07 6.43 99.48 0.64 -11.44 16 7 C -0.47 -26.56 9.12 23.38 0.21 -26.35 16 8 H 0.06 3.77 6.88 -2.91 -0.02 3.75 16 9 C 0.06 3.15 5.20 -21.18 -0.11 3.04 16 10 C -0.23 -11.43 6.82 22.46 0.15 -11.28 16 11 C -0.09 -3.99 9.96 22.01 0.22 -3.77 16 12 C -0.21 -9.02 10.04 22.42 0.22 -8.80 16 13 C -0.11 -5.17 8.77 22.37 0.20 -4.98 16 14 C 0.02 1.09 6.53 38.92 0.25 1.34 16 15 N -0.62 -29.40 5.19 -304.65 -1.58 -30.98 16 16 C 0.55 23.96 7.65 86.87 0.66 24.63 16 17 O -0.55 -25.50 13.24 -3.82 -0.05 -25.55 16 18 C 0.06 2.11 6.75 41.95 0.28 2.40 16 19 C -0.12 -3.30 9.64 22.56 0.22 -3.08 16 20 C -0.08 -1.48 9.74 22.52 0.22 -1.26 16 21 C -0.10 -1.95 5.75 -19.75 -0.11 -2.06 16 22 C 0.12 3.09 6.62 42.44 0.28 3.37 16 23 N -0.49 -17.18 9.38 -173.16 -1.62 -18.80 16 24 C -0.07 -1.61 5.91 29.77 0.18 -1.44 16 25 C -0.11 -1.54 5.97 30.60 0.18 -1.36 16 26 C -0.12 -1.25 5.98 30.62 0.18 -1.07 16 27 C -0.08 -0.81 5.68 29.72 0.17 -0.64 16 28 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 29 H 0.10 4.91 4.19 -2.91 -0.01 4.90 16 30 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.13 6.20 5.43 -2.91 -0.02 6.18 16 33 H 0.42 19.79 6.50 -92.71 -0.60 19.18 16 34 H 0.15 3.97 7.66 -2.91 -0.02 3.95 16 35 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 38 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 40 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 41 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.10 0.71 8.13 -2.39 -0.02 0.69 16 43 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -68.94 346.19 2.96 -65.98 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: 0.35 Total: 38.00 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 3.88 Total: -28.13 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -2.90 Total: -95.75 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.55 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.67 Total: 45.44 kcal Total: -68.94 2.96 -65.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584553307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.645 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds