Wall clock time and date at job start Tue Mar 31 2020 13:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48503 * 109.46783 * 270.00285 * 3 2 1 5 5 H 1.48499 * 109.46854 * 29.99698 * 3 2 1 6 6 H 1.48495 * 109.47161 * 150.00128 * 3 2 1 7 7 C 1.37882 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00037 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00047 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47083 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47220 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47220 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47186 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99933 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00097 * 180.02562 * 13 12 11 16 16 C 1.39005 * 119.99783 * 180.02562 * 15 13 12 17 17 N 1.29397 * 124.98596 * 179.97438 * 16 15 13 18 18 C 1.33013 * 117.46467 * 180.23524 * 17 16 15 19 19 C 1.33096 * 113.26893 * 359.25923 * 18 17 16 20 20 S 1.70995 * 124.99257 * 359.97438 * 16 15 13 21 21 C 1.52156 * 124.88915 * 180.86072 * 19 18 17 22 22 C 1.53383 * 107.39086 * 293.47119 * 21 19 18 23 23 C 1.51026 * 110.96975 * 80.22372 * 22 21 19 24 24 C 1.50935 * 116.05245 * 288.07649 * 23 22 21 25 25 C 1.52887 * 123.37619 * 179.00756 * 18 17 16 26 26 H 0.96999 * 119.99536 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46322 * 60.00197 * 9 7 2 28 28 H 1.09002 * 109.47277 * 300.00789 * 9 7 2 29 29 H 1.08996 * 109.47100 * 60.00027 * 10 9 7 30 30 H 1.09007 * 109.46921 * 300.00094 * 10 9 7 31 31 H 1.08996 * 109.46818 * 59.99420 * 11 10 9 32 32 H 1.08997 * 109.46327 * 300.00254 * 11 10 9 33 33 H 1.09004 * 109.46938 * 59.99746 * 12 11 10 34 34 H 1.08999 * 109.47061 * 299.99860 * 12 11 10 35 35 H 0.96998 * 120.00047 * 359.97438 * 15 13 12 36 36 H 1.09001 * 109.87372 * 174.00147 * 21 19 18 37 37 H 1.08997 * 109.93353 * 52.98106 * 21 19 18 38 38 H 1.08996 * 109.18110 * 319.84241 * 22 21 19 39 39 H 1.09004 * 109.13809 * 200.57906 * 22 21 19 40 40 H 1.09000 * 108.16574 * 49.78535 * 23 22 21 41 41 H 1.09004 * 108.16267 * 166.36817 * 23 22 21 42 42 H 1.08994 * 109.07052 * 193.06440 * 24 23 22 43 43 H 1.09001 * 109.06639 * 312.00883 * 24 23 22 44 44 H 1.08992 * 109.86197 * 4.68382 * 25 18 17 45 45 H 1.08996 * 109.85746 * 125.70361 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 6 7.5684 -4.0793 0.0003 14 8 8.1748 -3.0289 -0.0011 15 7 8.2422 -5.2465 0.0003 16 6 9.6322 -5.2465 0.0003 17 7 10.3742 -6.3066 0.0008 18 6 11.6928 -6.1325 0.0056 19 6 12.0541 -4.8516 -0.0066 20 16 10.6129 -3.8457 -0.0003 21 6 13.4915 -4.3529 -0.0235 22 6 14.1284 -4.7442 1.3159 23 6 14.5596 -6.1916 1.3069 24 6 13.4504 -7.2140 1.3573 25 6 12.6937 -7.2880 0.0288 26 1 -0.4849 0.8401 -0.0004 27 1 3.8751 -0.6797 0.8895 28 1 3.8746 -0.6808 -0.8905 29 1 3.6578 -3.1506 -0.8896 30 1 3.6584 -3.1503 0.8904 31 1 5.9148 -2.1228 0.8900 32 1 5.9147 -2.1229 -0.8899 33 1 5.6980 -4.5935 -0.8889 34 1 5.6980 -4.5925 0.8911 35 1 7.7572 -6.0865 0.0011 36 1 13.5064 -3.2690 -0.1382 37 1 14.0371 -4.8195 -0.8437 38 1 13.4034 -4.5916 2.1153 39 1 14.9983 -4.1125 1.4961 40 1 15.1425 -6.3669 0.4028 41 1 15.2132 -6.3567 2.1635 42 1 13.8774 -8.1920 1.5789 43 1 12.7527 -6.9436 2.1499 44 1 12.1643 -8.2380 -0.0434 45 1 13.3930 -7.1889 -0.8013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588268141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:23 Heat of formation + Delta-G solvation = -27.927149 kcal Electronic energy + Delta-G solvation = -23707.310550 eV Core-core repulsion = 20236.050727 eV Total energy + Delta-G solvation = -3471.259824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76359 -40.00798 -37.23890 -35.27860 -34.88010 -32.67855 -32.55378 -30.89645 -30.07403 -26.60875 -25.55143 -25.03068 -23.19570 -22.27190 -21.06840 -20.70179 -20.12898 -19.28151 -18.31723 -17.11621 -16.76888 -16.53912 -16.33913 -15.57528 -15.16593 -14.85227 -14.48635 -14.30956 -14.16968 -14.10204 -13.81103 -13.26213 -13.04335 -12.71782 -12.55605 -12.47626 -12.26378 -11.86580 -11.73207 -11.45280 -11.22988 -11.21083 -11.05446 -11.02051 -10.83297 -10.69843 -10.60614 -10.11861 -9.89930 -9.82993 -9.70872 -9.54928 -9.22964 -9.16366 -8.52278 -8.30464 -6.03264 -4.01122 0.61428 0.99866 1.72222 2.06412 2.38626 2.77544 3.32940 3.40284 3.45332 4.11640 4.30141 4.42090 4.47223 4.47920 4.58139 4.73504 4.88516 5.00641 5.02296 5.08792 5.16395 5.27529 5.28252 5.31335 5.41774 5.52702 5.56493 5.68442 5.70362 5.75672 5.78954 5.80614 5.89629 5.96969 6.00356 6.13016 6.29235 6.57740 6.64537 6.72907 6.92183 7.32341 7.45222 7.57579 7.63066 7.81328 8.54833 9.01484 9.59794 11.10144 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.001989 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.319153 B =14076.594012 C =14691.725773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.108 4.108 12 C -0.131 4.131 13 C 0.512 3.488 14 O -0.500 6.500 15 N -0.629 5.629 16 C 0.246 3.754 17 N -0.518 5.518 18 C 0.088 3.912 19 C -0.285 4.285 20 S 0.239 5.761 21 C -0.032 4.032 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.036 4.036 26 H 0.262 0.738 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.423 0.577 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.745 -15.308 1.004 34.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.170 4.170 13 C 0.300 3.700 14 O -0.373 6.373 15 N -0.280 5.280 16 C -0.122 4.122 17 N -0.241 5.241 18 C -0.044 4.044 19 C -0.407 4.407 20 S 0.491 5.509 21 C -0.072 4.072 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.076 4.076 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.262 0.738 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 30.396 -13.813 1.010 33.402 hybrid contribution 0.409 -0.406 -0.027 0.577 sum 30.804 -14.219 0.983 33.942 Atomic orbital electron populations 1.69919 1.06308 1.26858 1.51303 1.25048 0.94744 0.99241 0.94587 0.86772 0.80411 0.83558 0.78540 1.20307 1.21436 1.18916 1.21169 0.89611 0.94405 1.50698 0.91087 1.19574 0.96992 0.92332 0.96370 1.21481 0.91235 1.00165 1.01163 1.21549 0.97680 0.92122 1.03277 1.21803 0.87222 1.02738 1.05269 1.21692 0.91950 0.81876 0.74523 1.90651 1.69191 1.30549 1.46891 1.43134 1.01487 1.11673 1.71667 1.23229 0.90331 0.94875 1.03772 1.66171 1.05075 1.30477 1.22359 1.20275 0.88368 0.93974 1.01736 1.26370 1.01946 0.97439 1.14926 1.85007 0.92101 1.05284 1.68493 1.20361 0.88057 1.00547 0.98236 1.21248 1.00511 0.96298 0.97143 1.20799 0.98115 0.94406 1.02270 1.21123 0.97617 0.99161 0.97201 1.20589 0.94257 0.94650 0.98091 0.92785 0.96572 0.97015 0.92667 0.92651 0.91446 0.91440 0.87917 0.87920 0.73813 0.90821 0.90105 0.91757 0.91278 0.92197 0.92255 0.91226 0.91881 0.90064 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.02 -0.36 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.90 5.15 -26.73 -0.14 -2.04 16 11 C -0.11 -1.64 4.50 -26.73 -0.12 -1.76 16 12 C -0.13 -1.42 5.70 -27.89 -0.16 -1.58 16 13 C 0.51 6.21 7.79 -10.99 -0.09 6.13 16 14 O -0.50 -7.62 13.46 5.55 0.07 -7.54 16 15 N -0.63 -6.70 5.40 -13.11 -0.07 -6.77 16 16 C 0.25 3.06 8.20 -87.53 -0.72 2.35 16 17 N -0.52 -6.46 10.59 -10.47 -0.11 -6.57 16 18 C 0.09 0.95 6.05 -82.78 -0.50 0.44 16 19 C -0.29 -2.93 5.69 -35.37 -0.20 -3.13 16 20 S 0.24 2.90 20.23 -107.50 -2.17 0.72 16 21 C -0.03 -0.24 5.94 -26.96 -0.16 -0.40 16 22 C -0.11 -0.73 5.62 -27.53 -0.15 -0.88 16 23 C -0.12 -0.66 5.12 -28.76 -0.15 -0.81 16 24 C -0.11 -0.74 5.56 -27.73 -0.15 -0.89 16 25 C -0.04 -0.28 5.95 -26.75 -0.16 -0.44 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.42 3.30 8.82 -40.82 -0.36 2.94 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 38 H 0.06 0.50 7.91 -51.93 -0.41 0.09 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.29 7.70 -51.93 -0.40 -0.11 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -33.73 370.93 -11.23 -44.96 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.40 Total: -3.56 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -3.24 Total: -16.90 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.59 Total: -40.63 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.07 Total: -7.54 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.17 Total: 0.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.73 -11.23 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588268141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.032 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds