Wall clock time and date at job start Tue Mar 31 2020 13:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48503 * 109.46783 * 270.00285 * 3 2 1 5 5 H 1.48499 * 109.46854 * 29.99698 * 3 2 1 6 6 H 1.48495 * 109.47161 * 150.00128 * 3 2 1 7 7 C 1.37882 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00037 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00047 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47083 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47220 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47220 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47186 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99933 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00097 * 180.02562 * 13 12 11 16 16 C 1.39005 * 119.99783 * 180.02562 * 15 13 12 17 17 N 1.29397 * 124.98596 * 179.97438 * 16 15 13 18 18 C 1.33013 * 117.46467 * 180.23524 * 17 16 15 19 19 C 1.33096 * 113.26893 * 359.25923 * 18 17 16 20 20 S 1.70995 * 124.99257 * 359.97438 * 16 15 13 21 21 C 1.52156 * 124.88915 * 180.86072 * 19 18 17 22 22 C 1.53383 * 107.39086 * 293.47119 * 21 19 18 23 23 C 1.51026 * 110.96975 * 80.22372 * 22 21 19 24 24 C 1.50935 * 116.05245 * 288.07649 * 23 22 21 25 25 C 1.52887 * 123.37619 * 179.00756 * 18 17 16 26 26 H 0.96999 * 119.99536 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46322 * 60.00197 * 9 7 2 28 28 H 1.09002 * 109.47277 * 300.00789 * 9 7 2 29 29 H 1.08996 * 109.47100 * 60.00027 * 10 9 7 30 30 H 1.09007 * 109.46921 * 300.00094 * 10 9 7 31 31 H 1.08996 * 109.46818 * 59.99420 * 11 10 9 32 32 H 1.08997 * 109.46327 * 300.00254 * 11 10 9 33 33 H 1.09004 * 109.46938 * 59.99746 * 12 11 10 34 34 H 1.08999 * 109.47061 * 299.99860 * 12 11 10 35 35 H 0.96998 * 120.00047 * 359.97438 * 15 13 12 36 36 H 1.09001 * 109.87372 * 174.00147 * 21 19 18 37 37 H 1.08997 * 109.93353 * 52.98106 * 21 19 18 38 38 H 1.08996 * 109.18110 * 319.84241 * 22 21 19 39 39 H 1.09004 * 109.13809 * 200.57906 * 22 21 19 40 40 H 1.09000 * 108.16574 * 49.78535 * 23 22 21 41 41 H 1.09004 * 108.16267 * 166.36817 * 23 22 21 42 42 H 1.08994 * 109.07052 * 193.06440 * 24 23 22 43 43 H 1.09001 * 109.06639 * 312.00883 * 24 23 22 44 44 H 1.08992 * 109.86197 * 4.68382 * 25 18 17 45 45 H 1.08996 * 109.85746 * 125.70361 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 6 7.5684 -4.0793 0.0003 14 8 8.1748 -3.0289 -0.0011 15 7 8.2422 -5.2465 0.0003 16 6 9.6322 -5.2465 0.0003 17 7 10.3742 -6.3066 0.0008 18 6 11.6928 -6.1325 0.0056 19 6 12.0541 -4.8516 -0.0066 20 16 10.6129 -3.8457 -0.0003 21 6 13.4915 -4.3529 -0.0235 22 6 14.1284 -4.7442 1.3159 23 6 14.5596 -6.1916 1.3069 24 6 13.4504 -7.2140 1.3573 25 6 12.6937 -7.2880 0.0288 26 1 -0.4849 0.8401 -0.0004 27 1 3.8751 -0.6797 0.8895 28 1 3.8746 -0.6808 -0.8905 29 1 3.6578 -3.1506 -0.8896 30 1 3.6584 -3.1503 0.8904 31 1 5.9148 -2.1228 0.8900 32 1 5.9147 -2.1229 -0.8899 33 1 5.6980 -4.5935 -0.8889 34 1 5.6980 -4.5925 0.8911 35 1 7.7572 -6.0865 0.0011 36 1 13.5064 -3.2690 -0.1382 37 1 14.0371 -4.8195 -0.8437 38 1 13.4034 -4.5916 2.1153 39 1 14.9983 -4.1125 1.4961 40 1 15.1425 -6.3669 0.4028 41 1 15.2132 -6.3567 2.1635 42 1 13.8774 -8.1920 1.5789 43 1 12.7527 -6.9436 2.1499 44 1 12.1643 -8.2380 -0.0434 45 1 13.3930 -7.1889 -0.8013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588268141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:23 Heat of formation + Delta-G solvation = -47.672366 kcal Electronic energy + Delta-G solvation = -23708.166767 eV Core-core repulsion = 20236.050727 eV Total energy + Delta-G solvation = -3472.116041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66327 -40.84183 -37.91746 -36.73971 -35.78009 -34.63735 -33.12713 -32.16430 -31.16516 -28.06728 -26.21267 -26.01607 -24.24808 -23.40161 -22.18415 -21.65693 -21.23459 -20.10585 -19.21756 -18.83422 -17.90534 -17.57425 -17.30651 -16.37039 -16.26512 -16.05491 -15.60569 -15.38828 -15.19044 -14.83315 -14.72974 -14.44706 -14.05963 -13.86040 -13.77963 -13.61112 -13.54941 -13.07491 -12.87968 -12.46383 -12.34705 -12.12459 -12.09747 -11.97314 -11.75473 -11.55161 -11.53282 -11.45666 -11.35635 -11.31597 -11.24123 -10.92186 -10.75454 -10.72202 -10.13607 -9.12847 -8.29132 -6.32168 -0.25835 0.13238 0.88402 1.17876 1.35362 1.36963 1.49328 1.51193 1.91458 2.36227 3.06488 3.33564 3.59625 3.76009 3.93255 3.94848 4.06976 4.12326 4.14293 4.28093 4.44962 4.53299 4.60642 4.61821 4.67787 4.72882 4.76248 4.82286 4.83825 4.96195 5.02292 5.12696 5.19258 5.19718 5.24424 5.25998 5.28880 5.30710 5.44798 5.50101 5.61432 5.66717 5.69511 5.87006 6.30144 6.70319 6.76283 6.76431 7.32670 8.87390 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.001989 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.319153 B =14076.594012 C =14691.725773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.250 1.250 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.095 4.095 11 C -0.099 4.099 12 C -0.120 4.120 13 C 0.515 3.485 14 O -0.534 6.534 15 N -0.617 5.617 16 C 0.230 3.770 17 N -0.528 5.528 18 C 0.069 3.931 19 C -0.274 4.274 20 S 0.202 5.798 21 C -0.033 4.033 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.109 4.109 25 C -0.033 4.033 26 H 0.265 0.735 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.436 0.564 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.628 -16.030 0.868 37.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.160 4.160 13 C 0.304 3.696 14 O -0.410 6.410 15 N -0.269 5.269 16 C -0.138 4.138 17 N -0.252 5.252 18 C -0.061 4.061 19 C -0.396 4.396 20 S 0.454 5.546 21 C -0.073 4.073 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.073 4.073 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.277 0.723 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 33.292 -14.587 0.875 36.358 hybrid contribution -0.501 -0.273 0.019 0.570 sum 32.791 -14.859 0.894 36.012 Atomic orbital electron populations 1.70065 1.08165 1.28039 1.52927 1.26015 0.95621 1.03461 0.94362 0.85690 0.79438 0.78577 0.79148 1.19262 1.20939 1.17379 1.21565 0.92247 0.93153 1.49872 0.94500 1.19582 0.93764 0.95962 0.96212 1.21337 0.93577 0.96752 1.01582 1.21328 0.94968 0.94988 1.02459 1.21705 0.86228 1.00227 1.07810 1.21821 0.92279 0.81664 0.73870 1.90652 1.69912 1.31849 1.48611 1.42975 1.00999 1.11950 1.70967 1.23395 0.90960 0.94789 1.04645 1.66220 1.05994 1.30587 1.22360 1.20845 0.88307 0.95189 1.01790 1.26675 1.02467 0.96842 1.13603 1.85076 0.93813 1.06622 1.69131 1.20539 0.86358 1.00947 0.99475 1.21247 1.00555 0.97408 0.95746 1.20802 0.97897 0.93384 1.03530 1.21112 0.97397 1.00476 0.95726 1.20717 0.93888 0.93312 0.99409 0.92579 0.96676 0.96777 0.92252 0.92298 0.92397 0.92293 0.85340 0.85389 0.72253 0.90467 0.88385 0.93639 0.89521 0.90690 0.91206 0.89483 0.93986 0.90262 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.20 13.96 21.45 0.30 -59.91 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.95 45.34 27.47 68.60 1.88 47.22 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 7 C -0.53 -30.73 9.66 25.60 0.25 -30.48 16 8 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 9 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 10 C -0.09 -3.41 5.15 30.59 0.16 -3.25 16 11 C -0.10 -2.86 4.50 30.59 0.14 -2.73 16 12 C -0.12 -2.34 5.70 29.84 0.17 -2.17 16 13 C 0.51 11.88 7.79 87.66 0.68 12.57 16 14 O -0.53 -16.15 13.46 -3.04 -0.04 -16.19 16 15 N -0.62 -12.48 5.40 -313.78 -1.70 -14.18 16 16 C 0.23 5.64 8.20 179.27 1.47 7.11 16 17 N -0.53 -12.86 10.59 -187.05 -1.98 -14.84 16 18 C 0.07 1.42 6.05 41.93 0.25 1.67 16 19 C -0.27 -5.42 5.69 25.00 0.14 -5.27 16 20 S 0.20 4.92 20.23 -56.49 -1.14 3.77 16 21 C -0.03 -0.43 5.94 30.44 0.18 -0.25 16 22 C -0.11 -1.21 5.62 30.08 0.17 -1.04 16 23 C -0.12 -1.02 5.12 29.28 0.15 -0.87 16 24 C -0.11 -1.22 5.56 29.95 0.17 -1.05 16 25 C -0.03 -0.46 5.95 30.58 0.18 -0.28 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.01 0.70 7.20 -2.38 -0.02 0.69 16 28 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.44 6.10 8.82 -92.71 -0.82 5.28 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.96 7.87 -2.39 -0.02 0.95 16 38 H 0.04 0.67 7.91 -2.39 -0.02 0.65 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.46 7.70 -2.39 -0.02 0.44 16 41 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.04 0.65 7.90 -2.39 -0.02 0.63 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.10 1.00 7.88 -2.39 -0.02 0.98 16 Total: -1.00 -74.60 370.93 2.13 -72.47 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.11 Total: 7.83 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.69 Total: -26.18 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -3.38 Total: -88.92 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.04 Total: -16.19 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.14 Total: 3.77 kcal Total: -74.60 2.13 -72.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588268141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.796 kcal (2) G-P(sol) polarization free energy of solvation -74.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds