Wall clock time and date at job start Tue Mar 31 2020 13:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00243 * 2 1 4 4 H 1.48497 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47071 * 300.00298 * 3 2 1 6 6 H 1.48498 * 109.46698 * 60.00172 * 3 2 1 7 7 C 1.37879 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47194 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47123 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47123 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47194 * 180.02562 * 12 11 10 14 14 N 1.30958 * 126.42843 * 90.28929 * 13 12 11 15 15 C 1.35283 * 105.57956 * 180.13982 * 14 13 12 16 16 C 1.48167 * 126.42575 * 179.84747 * 15 14 13 17 17 C 1.38359 * 120.34887 * 312.59701 * 16 15 14 18 18 C 1.39026 * 120.69097 * 179.97438 * 17 16 15 19 19 C 1.36219 * 121.14227 * 0.02589 * 18 17 16 20 20 C 1.40540 * 120.05818 * 0.02562 * 19 18 17 21 21 C 1.40585 * 121.17696 * 179.97438 * 20 19 18 22 22 C 1.36110 * 119.65388 * 179.97438 * 21 20 19 23 23 C 1.39327 * 120.96349 * 0.02562 * 22 21 20 24 24 C 1.36200 * 120.94672 * 359.97438 * 23 22 21 25 25 C 1.40246 * 119.68216 * 0.02562 * 24 23 22 26 26 N 1.30867 * 107.14889 * 359.59283 * 15 14 13 27 27 O 1.21292 * 110.07179 * 0.25346 * 26 15 14 28 28 H 0.97001 * 119.99968 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47647 * 59.99914 * 9 7 2 30 30 H 1.09000 * 109.47512 * 299.99787 * 9 7 2 31 31 H 1.08998 * 109.46887 * 59.99456 * 10 9 7 32 32 H 1.09006 * 109.46676 * 299.99816 * 10 9 7 33 33 H 1.08998 * 109.47671 * 59.99951 * 11 10 9 34 34 H 1.09006 * 109.47207 * 299.99506 * 11 10 9 35 35 H 1.08998 * 109.46887 * 59.99472 * 12 11 10 36 36 H 1.09006 * 109.46676 * 299.99831 * 12 11 10 37 37 H 1.08001 * 119.65600 * 359.97438 * 17 16 15 38 38 H 1.07997 * 119.43151 * 180.02562 * 18 17 16 39 39 H 1.08001 * 119.97583 * 179.72238 * 19 18 17 40 40 H 1.07994 * 120.17381 * 359.97438 * 21 20 19 41 41 H 1.08006 * 119.51641 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.52463 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.15880 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 6 2.4745 -6.1501 -0.0037 13 6 1.7209 -7.4551 -0.0048 14 7 1.3371 -8.1305 -1.0591 15 6 0.6999 -9.2229 -0.5786 16 6 0.0766 -10.3016 -1.3806 17 6 -0.7552 -9.9921 -2.4421 18 6 -1.3433 -10.9986 -3.1996 19 6 -1.1195 -12.3128 -2.9202 20 6 -0.2822 -12.6723 -1.8502 21 6 -0.0353 -14.0213 -1.5406 22 6 0.7814 -14.3343 -0.4977 23 6 1.3777 -13.3365 0.2703 24 6 1.1606 -12.0196 -0.0014 25 6 0.3249 -11.6593 -1.0684 26 7 0.7421 -9.1510 0.7274 27 8 1.3241 -8.1435 1.0702 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 2.8719 -3.6051 0.8872 32 1 2.8718 -3.6036 -0.8928 33 1 0.8532 -5.0443 -0.8930 34 1 0.8539 -5.0454 0.8870 35 1 3.1011 -6.0926 0.8863 36 1 3.1011 -6.0920 -0.8937 37 1 -0.9496 -8.9578 -2.6846 38 1 -1.9889 -10.7339 -4.0240 39 1 -1.5897 -13.0794 -3.5183 40 1 -0.4913 -14.8050 -2.1272 41 1 0.9691 -15.3714 -0.2616 42 1 2.0214 -13.6112 1.0929 43 1 1.6291 -11.2566 0.6025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588321368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:55 Heat of formation + Delta-G solvation = 88.219508 kcal Electronic energy + Delta-G solvation = -24703.845649 eV Core-core repulsion = 21102.178372 eV Total energy + Delta-G solvation = -3601.667278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.58667 -40.68684 -37.00637 -36.19613 -35.57080 -33.79095 -32.78811 -31.70496 -30.69512 -29.62213 -29.34023 -25.80433 -25.03872 -23.74340 -23.37267 -22.91799 -22.07617 -20.75724 -20.19485 -18.17446 -18.05343 -17.50423 -17.08759 -16.46175 -16.22396 -15.27670 -15.17187 -14.81824 -14.60937 -14.35925 -14.06614 -13.95098 -13.80328 -13.12522 -13.03197 -12.95297 -12.38465 -12.28166 -12.12780 -11.95541 -11.71544 -11.57560 -11.35600 -11.30735 -11.13875 -11.04561 -10.68110 -10.60425 -10.56426 -10.38440 -9.89916 -9.72736 -9.32471 -9.04777 -8.98921 -8.35708 -8.19809 -6.00411 -4.02887 0.00121 0.65996 1.05188 1.55820 2.20134 2.66000 2.77568 3.30876 3.31893 3.38491 3.42274 3.67368 4.05060 4.31583 4.45430 4.47647 4.51103 4.66608 4.76171 4.84604 4.97239 5.05582 5.10597 5.15884 5.20168 5.25937 5.35648 5.45832 5.55488 5.71251 5.74335 5.77231 5.82669 5.89639 5.98484 6.05006 6.06343 6.17781 6.24571 6.33137 6.41928 6.60371 6.66363 6.81475 7.08975 7.67221 7.80622 7.99673 8.06568 8.41576 9.04768 9.61408 11.10945 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.001928 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.276334 B =14515.734516 C =15195.135606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.108 4.108 11 C -0.116 4.116 12 C -0.032 4.032 13 C 0.202 3.798 14 N -0.475 5.475 15 C 0.208 3.792 16 C -0.007 4.007 17 C -0.067 4.067 18 C -0.117 4.117 19 C -0.090 4.090 20 C -0.053 4.053 21 C -0.104 4.104 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.104 4.104 25 C -0.025 4.025 26 N -0.377 5.377 27 O 0.079 5.921 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 -29.643 -3.435 29.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.071 4.071 13 C -0.018 4.018 14 N -0.208 5.208 15 C -0.062 4.062 16 C -0.008 4.008 17 C -0.087 4.087 18 C -0.135 4.135 19 C -0.108 4.108 20 C -0.054 4.054 21 C -0.122 4.122 22 C -0.134 4.134 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.026 4.026 26 N -0.083 5.083 27 O 0.019 5.981 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.060 -30.207 -3.321 30.389 hybrid contribution 0.428 1.161 0.087 1.241 sum 0.368 -29.046 -3.234 29.228 Atomic orbital electron populations 1.69974 1.06071 1.26485 1.50949 1.25041 0.94851 0.99315 0.95381 0.86545 0.80112 0.83831 0.77561 1.19720 1.21045 1.21049 1.21297 0.93090 0.91064 1.50408 0.92563 1.19109 0.94036 0.91312 0.97328 1.21634 0.99178 0.93022 1.00776 1.21745 0.97510 0.93324 1.02850 1.20582 0.97197 0.83332 1.05940 1.29152 0.95314 0.97338 0.79994 1.72140 1.15422 1.04690 1.28552 1.23730 0.99714 0.95083 0.87679 1.17265 0.99222 0.88265 0.96077 1.21219 0.94123 1.00563 0.92763 1.20794 1.00229 0.92425 1.00017 1.21167 0.96839 0.96818 0.95993 1.17982 0.98180 0.93072 0.96122 1.21029 0.98691 0.94619 0.97898 1.20887 0.97318 0.99557 0.95628 1.20904 0.99708 0.92636 0.99716 1.21116 0.97628 0.97035 0.96376 1.17834 0.97454 0.91306 0.96054 1.75019 1.15086 1.03418 1.14814 1.85293 1.51963 1.24823 1.36015 0.93066 0.96570 0.96548 0.92874 0.92884 0.91453 0.91605 0.87913 0.87160 0.84814 0.84888 0.84972 0.85204 0.85716 0.85745 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 10 C -0.11 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.12 -1.77 5.20 -26.73 -0.14 -1.91 16 12 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 13 C 0.20 2.76 7.75 -12.98 -0.10 2.66 16 14 N -0.48 -7.13 11.58 -9.88 -0.11 -7.24 16 15 C 0.21 3.07 6.89 -156.09 -1.07 1.99 16 16 C -0.01 -0.09 5.91 -104.53 -0.62 -0.70 16 17 C -0.07 -0.75 9.73 -39.24 -0.38 -1.13 16 18 C -0.12 -1.01 9.93 -40.02 -0.40 -1.40 16 19 C -0.09 -0.73 9.75 -39.44 -0.38 -1.12 16 20 C -0.05 -0.53 5.74 -106.85 -0.61 -1.15 16 21 C -0.10 -0.83 9.77 -39.46 -0.39 -1.22 16 22 C -0.12 -0.90 9.95 -39.94 -0.40 -1.30 16 23 C -0.11 -1.02 9.95 -39.91 -0.40 -1.42 16 24 C -0.10 -1.20 9.27 -39.56 -0.37 -1.57 16 25 C -0.03 -0.31 5.76 -106.61 -0.61 -0.92 16 26 N -0.38 -5.62 10.64 30.98 0.33 -5.29 16 27 O 0.08 1.12 11.29 18.01 0.20 1.33 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.13 1.57 6.15 -52.49 -0.32 1.25 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -32.54 369.46 -10.80 -43.34 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.78 Total: -3.19 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -6.72 Total: -24.86 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.95 Total: -38.64 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.54 -10.80 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588321368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.563 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds