Wall clock time and date at job start Tue Mar 31 2020 13:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00243 * 2 1 4 4 H 1.48497 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47071 * 300.00298 * 3 2 1 6 6 H 1.48498 * 109.46698 * 60.00172 * 3 2 1 7 7 C 1.37879 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47194 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47123 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47123 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47194 * 180.02562 * 12 11 10 14 14 N 1.30958 * 126.42843 * 90.28929 * 13 12 11 15 15 C 1.35283 * 105.57956 * 180.13982 * 14 13 12 16 16 C 1.48167 * 126.42575 * 179.84747 * 15 14 13 17 17 C 1.38359 * 120.34887 * 312.59701 * 16 15 14 18 18 C 1.39026 * 120.69097 * 179.97438 * 17 16 15 19 19 C 1.36219 * 121.14227 * 0.02589 * 18 17 16 20 20 C 1.40540 * 120.05818 * 0.02562 * 19 18 17 21 21 C 1.40585 * 121.17696 * 179.97438 * 20 19 18 22 22 C 1.36110 * 119.65388 * 179.97438 * 21 20 19 23 23 C 1.39327 * 120.96349 * 0.02562 * 22 21 20 24 24 C 1.36200 * 120.94672 * 359.97438 * 23 22 21 25 25 C 1.40246 * 119.68216 * 0.02562 * 24 23 22 26 26 N 1.30867 * 107.14889 * 359.59283 * 15 14 13 27 27 O 1.21292 * 110.07179 * 0.25346 * 26 15 14 28 28 H 0.97001 * 119.99968 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47647 * 59.99914 * 9 7 2 30 30 H 1.09000 * 109.47512 * 299.99787 * 9 7 2 31 31 H 1.08998 * 109.46887 * 59.99456 * 10 9 7 32 32 H 1.09006 * 109.46676 * 299.99816 * 10 9 7 33 33 H 1.08998 * 109.47671 * 59.99951 * 11 10 9 34 34 H 1.09006 * 109.47207 * 299.99506 * 11 10 9 35 35 H 1.08998 * 109.46887 * 59.99472 * 12 11 10 36 36 H 1.09006 * 109.46676 * 299.99831 * 12 11 10 37 37 H 1.08001 * 119.65600 * 359.97438 * 17 16 15 38 38 H 1.07997 * 119.43151 * 180.02562 * 18 17 16 39 39 H 1.08001 * 119.97583 * 179.72238 * 19 18 17 40 40 H 1.07994 * 120.17381 * 359.97438 * 21 20 19 41 41 H 1.08006 * 119.51641 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.52463 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.15880 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 6 2.4745 -6.1501 -0.0037 13 6 1.7209 -7.4551 -0.0048 14 7 1.3371 -8.1305 -1.0591 15 6 0.6999 -9.2229 -0.5786 16 6 0.0766 -10.3016 -1.3806 17 6 -0.7552 -9.9921 -2.4421 18 6 -1.3433 -10.9986 -3.1996 19 6 -1.1195 -12.3128 -2.9202 20 6 -0.2822 -12.6723 -1.8502 21 6 -0.0353 -14.0213 -1.5406 22 6 0.7814 -14.3343 -0.4977 23 6 1.3777 -13.3365 0.2703 24 6 1.1606 -12.0196 -0.0014 25 6 0.3249 -11.6593 -1.0684 26 7 0.7421 -9.1510 0.7274 27 8 1.3241 -8.1435 1.0702 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 2.8719 -3.6051 0.8872 32 1 2.8718 -3.6036 -0.8928 33 1 0.8532 -5.0443 -0.8930 34 1 0.8539 -5.0454 0.8870 35 1 3.1011 -6.0926 0.8863 36 1 3.1011 -6.0920 -0.8937 37 1 -0.9496 -8.9578 -2.6846 38 1 -1.9889 -10.7339 -4.0240 39 1 -1.5897 -13.0794 -3.5183 40 1 -0.4913 -14.8050 -2.1272 41 1 0.9691 -15.3714 -0.2616 42 1 2.0214 -13.6112 1.0929 43 1 1.6291 -11.2566 0.6025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588321368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:54 Heat of formation + Delta-G solvation = 70.846119 kcal Electronic energy + Delta-G solvation = -24704.599016 eV Core-core repulsion = 21102.178372 eV Total energy + Delta-G solvation = -3602.420645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.68691 -41.39117 -37.79594 -37.40675 -36.68993 -35.28617 -34.16124 -32.95181 -31.42403 -30.89694 -30.31588 -27.50194 -25.99465 -24.86628 -24.25434 -23.92123 -23.22830 -21.84353 -21.68025 -19.27994 -18.87777 -18.42457 -18.31919 -17.90109 -17.18660 -16.57050 -16.38951 -16.11695 -15.65003 -15.40449 -14.84810 -14.73300 -14.65534 -14.50066 -14.26894 -13.76204 -13.73269 -13.67772 -13.48107 -13.03605 -12.95287 -12.85232 -12.43556 -12.37501 -12.27163 -12.18294 -12.15407 -11.99908 -11.96891 -11.48412 -11.36816 -11.24530 -11.03360 -10.73138 -10.53547 -9.69924 -8.92506 -8.17850 -6.28541 -0.75339 -0.05012 0.01137 0.72044 1.22934 1.41972 1.42198 1.55528 1.72197 1.95318 2.36743 2.43181 2.85452 3.13670 3.15817 3.62668 3.71133 3.83949 3.89575 4.01730 4.02480 4.08047 4.16449 4.27081 4.31070 4.35886 4.51641 4.59084 4.61251 4.68669 4.77939 4.85655 4.86952 4.89508 5.07118 5.09148 5.15836 5.22704 5.31365 5.33168 5.33881 5.50198 5.53791 5.58494 5.74403 5.81077 5.90901 5.95801 6.27866 6.90521 6.98863 7.41013 8.94283 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.001928 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.276334 B =14515.734516 C =15195.135606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.106 4.106 12 C -0.020 4.020 13 C 0.204 3.796 14 N -0.496 5.496 15 C 0.207 3.793 16 C -0.049 4.049 17 C -0.071 4.071 18 C -0.126 4.126 19 C -0.073 4.073 20 C -0.073 4.073 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.043 4.043 26 N -0.393 5.393 27 O 0.075 5.925 28 H 0.262 0.738 29 H -0.013 1.013 30 H -0.010 1.010 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.141 0.859 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 -31.841 -4.366 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.144 4.144 12 C -0.058 4.058 13 C -0.016 4.016 14 N -0.229 5.229 15 C -0.063 4.063 16 C -0.051 4.051 17 C -0.091 4.091 18 C -0.143 4.143 19 C -0.091 4.091 20 C -0.073 4.073 21 C -0.113 4.113 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.158 4.158 25 C -0.045 4.045 26 N -0.101 5.101 27 O 0.016 5.984 28 H 0.071 0.929 29 H 0.005 0.995 30 H 0.008 0.992 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.180 0.820 39 H 0.190 0.810 40 H 0.184 0.816 41 H 0.176 0.824 42 H 0.159 0.841 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.872 -32.409 -4.245 32.697 hybrid contribution 0.085 1.734 0.352 1.771 sum 0.957 -30.675 -3.893 30.936 Atomic orbital electron populations 1.70116 1.07918 1.27582 1.52136 1.26032 0.95757 1.03556 0.94986 0.85393 0.79273 0.78776 0.77568 1.18185 1.20664 1.20615 1.21800 0.93804 0.92286 1.49785 0.91601 1.19067 0.94708 0.93532 0.94628 1.21418 0.97917 0.92000 1.01937 1.21514 0.97736 0.93194 1.01990 1.20558 0.96190 0.80816 1.08268 1.29425 0.94882 0.97582 0.79719 1.72133 1.16096 1.05339 1.29298 1.24131 0.99194 0.95274 0.87725 1.17518 1.01401 0.88583 0.97551 1.21388 0.93936 1.01167 0.92588 1.21105 1.00531 0.92211 1.00490 1.21636 0.95038 0.97482 0.94911 1.18367 0.98680 0.93672 0.96619 1.21485 0.97727 0.94386 0.97705 1.21276 0.96782 1.00695 0.95190 1.21223 0.99134 0.92020 0.99957 1.21089 0.99488 0.97828 0.97414 1.18055 0.98141 0.91465 0.96799 1.75001 1.15935 1.03883 1.15307 1.85262 1.52102 1.24834 1.36156 0.92940 0.99472 0.99194 0.91382 0.91890 0.92872 0.92149 0.84932 0.85550 0.85526 0.82000 0.81003 0.81556 0.82448 0.84086 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 2 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.53 5.15 30.59 0.16 -3.37 16 11 C -0.11 -3.24 5.20 30.59 0.16 -3.08 16 12 C -0.02 -0.45 5.84 29.85 0.17 -0.28 16 13 C 0.20 5.68 7.75 88.35 0.68 6.37 16 14 N -0.50 -15.53 11.58 -302.42 -3.50 -19.03 16 15 C 0.21 6.49 6.89 137.17 0.94 7.44 16 16 C -0.05 -1.35 5.91 -19.81 -0.12 -1.47 16 17 C -0.07 -1.63 9.73 22.49 0.22 -1.41 16 18 C -0.13 -1.98 9.93 21.99 0.22 -1.77 16 19 C -0.07 -0.99 9.75 22.36 0.22 -0.77 16 20 C -0.07 -1.34 5.74 -21.31 -0.12 -1.47 16 21 C -0.10 -1.21 9.77 22.35 0.22 -0.99 16 22 C -0.12 -1.56 9.95 22.04 0.22 -1.34 16 23 C -0.11 -1.85 9.95 22.06 0.22 -1.63 16 24 C -0.14 -3.41 9.27 22.28 0.21 -3.20 16 25 C -0.04 -1.08 5.76 -21.15 -0.12 -1.21 16 26 N -0.39 -12.52 10.64 -58.99 -0.63 -13.15 16 27 O 0.08 2.23 11.29 74.51 0.84 3.07 16 28 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 29 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 38 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 40 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.11 2.89 6.15 -2.91 -0.02 2.87 16 Total: -1.00 -74.41 369.46 4.16 -70.25 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.01 Total: 6.98 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 4.12 Total: -36.99 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -3.84 Total: -89.45 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.84 Total: 3.07 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -74.41 4.16 -70.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588321368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.098 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds