Wall clock time and date at job start Tue Mar 31 2020 13:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47164 * 240.00311 * 3 2 1 5 5 H 1.48507 * 109.47328 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47706 * 119.99897 * 3 2 1 7 7 C 1.37880 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47199 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47371 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47199 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99959 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00121 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00279 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.46878 * 34.99936 * 16 15 13 18 18 C 1.50696 * 109.46924 * 275.00299 * 16 15 13 19 19 N 1.34777 * 120.00076 * 180.02562 * 18 16 15 20 20 O 1.21281 * 120.00074 * 359.97438 * 18 16 15 21 21 C 1.50701 * 109.46958 * 155.00123 * 16 15 13 22 22 C 1.38237 * 119.97487 * 39.72652 * 21 16 15 23 23 C 1.38203 * 120.02399 * 179.76293 * 22 21 16 24 24 C 1.38452 * 119.97202 * 0.51189 * 23 22 21 25 25 F 1.35105 * 120.02582 * 179.76968 * 24 23 22 26 26 C 1.38457 * 119.95097 * 359.74177 * 24 23 22 27 27 C 1.38197 * 119.97592 * 0.02562 * 26 24 23 28 28 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46558 * 59.99924 * 9 7 2 30 30 H 1.09001 * 109.47237 * 300.00488 * 9 7 2 31 31 H 1.09001 * 109.47396 * 59.99595 * 10 9 7 32 32 H 1.09001 * 109.47256 * 300.00270 * 10 9 7 33 33 H 1.09001 * 109.47309 * 59.99398 * 11 10 9 34 34 H 1.09001 * 109.47033 * 300.00262 * 11 10 9 35 35 H 1.08996 * 109.47693 * 59.99788 * 12 11 10 36 36 H 1.09000 * 109.47457 * 299.99611 * 12 11 10 37 37 H 0.97001 * 119.99590 * 359.97438 * 15 13 12 38 38 H 0.97001 * 120.00485 * 180.02562 * 19 18 16 39 39 H 0.97005 * 119.99790 * 359.72082 * 19 18 16 40 40 H 1.08001 * 119.98995 * 0.02562 * 22 21 16 41 41 H 1.08001 * 120.01203 * 180.25694 * 23 22 21 42 42 H 1.08005 * 120.01685 * 179.97438 * 26 24 23 43 43 H 1.07994 * 119.98874 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4801 -4.9871 0.0033 12 6 2.4743 -6.1500 0.0037 13 6 1.7207 -7.4551 0.0048 14 8 0.5080 -7.4550 0.0048 15 7 2.3946 -8.6224 0.0048 16 6 1.6621 -9.8911 0.0054 17 1 0.7511 -9.7849 -0.5837 18 6 1.3042 -10.2638 1.4210 19 7 0.6236 -11.4008 1.6670 20 8 1.6294 -9.5411 2.3391 21 6 2.5259 -10.9701 -0.5951 22 6 3.8772 -11.0133 -0.3069 23 6 4.6694 -12.0053 -0.8532 24 6 4.1111 -12.9497 -1.6978 25 9 4.8854 -13.9171 -2.2361 26 6 2.7585 -12.9022 -1.9899 27 6 1.9674 -11.9123 -1.4387 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5574 -0.8880 30 1 0.6246 -2.5563 0.8919 31 1 2.8718 -3.6036 0.8926 32 1 2.8718 -3.6052 -0.8873 33 1 0.8537 -5.0453 -0.8868 34 1 0.8531 -5.0442 0.8931 35 1 3.1010 -6.0920 0.8935 36 1 3.1009 -6.0927 -0.8864 37 1 3.3646 -8.6223 0.0037 38 1 0.3928 -11.6406 2.5781 39 1 0.3606 -11.9772 0.9324 40 1 4.3132 -10.2741 0.3488 41 1 5.7243 -12.0413 -0.6246 42 1 2.3220 -13.6382 -2.6490 43 1 0.9123 -11.8753 -1.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588681367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:49 Heat of formation + Delta-G solvation = -116.872424 kcal Electronic energy + Delta-G solvation = -25799.233710 eV Core-core repulsion = 21757.903754 eV Total energy + Delta-G solvation = -4041.329956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.43622 -41.01297 -39.27910 -38.89879 -35.23709 -34.72982 -34.05867 -32.61017 -31.84822 -31.47005 -29.66723 -27.38445 -25.38121 -23.83315 -22.78367 -22.45712 -20.82298 -20.28561 -19.92569 -18.38548 -18.05839 -17.49715 -17.30956 -16.62249 -16.21253 -16.12904 -15.92571 -15.52205 -15.43771 -14.91769 -14.55118 -14.43088 -14.21487 -14.08283 -13.81329 -13.67291 -13.19959 -12.89676 -12.58128 -12.24239 -12.13481 -11.65241 -11.63777 -11.55512 -10.93461 -10.68780 -10.50926 -10.47811 -10.36319 -10.03183 -9.91537 -9.77008 -9.56648 -9.42352 -9.19421 -9.11638 -8.94920 -8.26554 -5.91505 -3.93852 0.39650 0.57059 2.26732 2.55942 2.77248 2.94835 3.38038 3.42135 3.44192 3.45067 3.64413 3.90826 4.05971 4.25879 4.52032 4.55014 4.57996 4.61747 4.78136 5.05550 5.23310 5.25567 5.36962 5.42459 5.44253 5.48305 5.54469 5.71421 5.89953 6.06838 6.19400 6.20108 6.35285 6.42635 6.59671 6.89440 6.92885 7.06947 7.23850 7.31558 7.78034 7.90373 7.94805 8.10176 8.20025 8.51949 9.13636 9.69398 11.19781 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.001994 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.778612 B =14038.743840 C =14758.615401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.523 3.477 14 O -0.531 6.531 15 N -0.717 5.717 16 C 0.171 3.829 17 H 0.125 0.875 18 C 0.511 3.489 19 N -0.852 5.852 20 O -0.522 6.522 21 C -0.106 4.106 22 C -0.076 4.076 23 C -0.146 4.146 24 C 0.105 3.895 25 F -0.137 7.137 26 C -0.148 4.148 27 C -0.076 4.076 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.404 0.596 38 H 0.403 0.597 39 H 0.400 0.600 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 -33.234 -3.022 34.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.176 4.176 13 C 0.311 3.689 14 O -0.406 6.406 15 N -0.371 5.371 16 C 0.062 3.938 17 H 0.143 0.857 18 C 0.293 3.707 19 N -0.416 5.416 20 O -0.396 6.396 21 C -0.107 4.107 22 C -0.095 4.095 23 C -0.165 4.165 24 C 0.086 3.914 25 F -0.116 7.116 26 C -0.166 4.166 27 C -0.094 4.094 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.240 0.760 38 H 0.235 0.765 39 H 0.228 0.772 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.313 -32.502 -2.572 33.209 hybrid contribution 0.833 0.239 -0.052 0.869 sum 7.146 -32.262 -2.624 33.148 Atomic orbital electron populations 1.69968 1.06034 1.26569 1.50912 1.25046 0.94855 0.99216 0.95513 0.86667 0.79559 0.83259 0.78528 1.20311 1.21356 1.20295 1.21252 0.92942 0.91215 1.50414 0.92809 1.19094 0.94072 0.91254 0.97310 1.21646 0.99081 0.93961 1.00093 1.21455 0.97017 0.92651 1.02987 1.21785 1.00165 0.91486 1.04181 1.21151 0.88468 0.85348 0.73943 1.90697 1.14225 1.87455 1.48187 1.45829 1.10127 1.03858 1.77305 1.19524 0.96999 0.83727 0.93563 0.85715 1.20907 0.77460 0.80813 0.91518 1.43772 1.60121 1.24938 1.12818 1.90789 1.52857 1.50249 1.45696 1.19664 0.94352 0.97048 0.99684 1.20870 0.92694 0.97598 0.98299 1.21173 1.01541 0.95189 0.98577 1.17801 0.89195 0.88141 0.96268 1.91532 1.74808 1.60983 1.84244 1.21162 0.92079 1.00868 1.02534 1.20896 1.00528 0.93081 0.94944 0.93023 0.96594 0.96582 0.93428 0.93471 0.91796 0.91733 0.88816 0.88975 0.76017 0.76537 0.77227 0.84605 0.84136 0.84096 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.32 5.15 -26.74 -0.14 -2.46 16 11 C -0.10 -1.90 4.50 -26.74 -0.12 -2.02 16 12 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 13 C 0.52 7.45 7.66 -10.98 -0.08 7.36 16 14 O -0.53 -9.64 15.64 5.56 0.09 -9.55 16 15 N -0.72 -7.34 4.56 -56.07 -0.26 -7.59 16 16 C 0.17 1.49 2.58 -70.24 -0.18 1.31 16 17 H 0.13 1.09 7.44 -51.93 -0.39 0.71 16 18 C 0.51 5.32 7.44 -10.99 -0.08 5.24 16 19 N -0.85 -5.25 8.77 31.22 0.27 -4.98 16 20 O -0.52 -7.94 17.16 5.56 0.10 -7.84 16 21 C -0.11 -0.64 4.75 -104.62 -0.50 -1.14 16 22 C -0.08 -0.44 9.05 -39.59 -0.36 -0.80 16 23 C -0.15 -0.82 10.03 -39.52 -0.40 -1.22 16 24 C 0.11 0.66 7.30 -39.42 -0.29 0.37 16 25 F -0.14 -1.02 17.27 2.25 0.04 -0.99 16 26 C -0.15 -0.71 10.03 -39.52 -0.40 -1.10 16 27 C -0.08 -0.34 9.51 -39.59 -0.38 -0.71 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.40 3.06 6.85 -40.82 -0.28 2.78 16 38 H 0.40 2.20 8.93 -40.82 -0.36 1.84 16 39 H 0.40 1.22 8.56 -40.82 -0.35 0.87 16 40 H 0.14 0.68 6.90 -52.49 -0.36 0.32 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 43 H 0.14 0.29 8.04 -52.49 -0.42 -0.13 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -38.33 374.72 -7.95 -46.28 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.93 Total: -0.24 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.63 Total: -10.79 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.75 Total: -39.66 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.18 Total: -17.39 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.33 -7.95 -46.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588681367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.594 kcal (2) G-P(sol) polarization free energy of solvation -38.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds