Wall clock time and date at job start Tue Mar 31 2020 13:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47164 * 240.00311 * 3 2 1 5 5 H 1.48507 * 109.47328 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47706 * 119.99897 * 3 2 1 7 7 C 1.37880 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47199 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47371 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47199 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99959 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00121 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00279 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.46878 * 34.99936 * 16 15 13 18 18 C 1.50696 * 109.46924 * 275.00299 * 16 15 13 19 19 N 1.34777 * 120.00076 * 180.02562 * 18 16 15 20 20 O 1.21281 * 120.00074 * 359.97438 * 18 16 15 21 21 C 1.50701 * 109.46958 * 155.00123 * 16 15 13 22 22 C 1.38237 * 119.97487 * 39.72652 * 21 16 15 23 23 C 1.38203 * 120.02399 * 179.76293 * 22 21 16 24 24 C 1.38452 * 119.97202 * 0.51189 * 23 22 21 25 25 F 1.35105 * 120.02582 * 179.76968 * 24 23 22 26 26 C 1.38457 * 119.95097 * 359.74177 * 24 23 22 27 27 C 1.38197 * 119.97592 * 0.02562 * 26 24 23 28 28 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46558 * 59.99924 * 9 7 2 30 30 H 1.09001 * 109.47237 * 300.00488 * 9 7 2 31 31 H 1.09001 * 109.47396 * 59.99595 * 10 9 7 32 32 H 1.09001 * 109.47256 * 300.00270 * 10 9 7 33 33 H 1.09001 * 109.47309 * 59.99398 * 11 10 9 34 34 H 1.09001 * 109.47033 * 300.00262 * 11 10 9 35 35 H 1.08996 * 109.47693 * 59.99788 * 12 11 10 36 36 H 1.09000 * 109.47457 * 299.99611 * 12 11 10 37 37 H 0.97001 * 119.99590 * 359.97438 * 15 13 12 38 38 H 0.97001 * 120.00485 * 180.02562 * 19 18 16 39 39 H 0.97005 * 119.99790 * 359.72082 * 19 18 16 40 40 H 1.08001 * 119.98995 * 0.02562 * 22 21 16 41 41 H 1.08001 * 120.01203 * 180.25694 * 23 22 21 42 42 H 1.08005 * 120.01685 * 179.97438 * 26 24 23 43 43 H 1.07994 * 119.98874 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4801 -4.9871 0.0033 12 6 2.4743 -6.1500 0.0037 13 6 1.7207 -7.4551 0.0048 14 8 0.5080 -7.4550 0.0048 15 7 2.3946 -8.6224 0.0048 16 6 1.6621 -9.8911 0.0054 17 1 0.7511 -9.7849 -0.5837 18 6 1.3042 -10.2638 1.4210 19 7 0.6236 -11.4008 1.6670 20 8 1.6294 -9.5411 2.3391 21 6 2.5259 -10.9701 -0.5951 22 6 3.8772 -11.0133 -0.3069 23 6 4.6694 -12.0053 -0.8532 24 6 4.1111 -12.9497 -1.6978 25 9 4.8854 -13.9171 -2.2361 26 6 2.7585 -12.9022 -1.9899 27 6 1.9674 -11.9123 -1.4387 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5574 -0.8880 30 1 0.6246 -2.5563 0.8919 31 1 2.8718 -3.6036 0.8926 32 1 2.8718 -3.6052 -0.8873 33 1 0.8537 -5.0453 -0.8868 34 1 0.8531 -5.0442 0.8931 35 1 3.1010 -6.0920 0.8935 36 1 3.1009 -6.0927 -0.8864 37 1 3.3646 -8.6223 0.0037 38 1 0.3928 -11.6406 2.5781 39 1 0.3606 -11.9772 0.9324 40 1 4.3132 -10.2741 0.3488 41 1 5.7243 -12.0413 -0.6246 42 1 2.3220 -13.6382 -2.6490 43 1 0.9123 -11.8753 -1.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588681367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:48 Heat of formation + Delta-G solvation = -144.956538 kcal Electronic energy + Delta-G solvation = -25800.451529 eV Core-core repulsion = 21757.903754 eV Total energy + Delta-G solvation = -4042.547775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.92927 -41.78182 -40.14485 -39.64493 -36.68997 -35.90656 -34.80815 -34.59541 -32.41118 -32.14914 -31.20897 -28.34592 -27.01428 -24.44710 -23.98224 -23.31647 -21.95425 -21.46904 -21.20791 -18.93817 -18.72218 -18.40665 -18.17631 -18.16696 -17.22621 -16.79744 -16.75223 -16.60303 -16.51586 -16.17227 -15.55725 -15.47922 -15.14022 -14.91530 -14.52909 -14.49964 -14.39603 -13.95427 -13.66317 -13.57664 -13.38539 -13.27237 -12.79240 -12.77650 -12.36357 -12.15132 -12.11700 -12.02624 -11.59297 -11.35996 -11.35711 -11.18801 -10.85992 -10.72938 -10.53309 -10.28201 -10.13619 -9.66998 -8.17439 -6.29592 -0.05471 0.20043 1.40756 1.45092 1.48471 1.52804 1.55540 1.98422 2.38626 2.42901 2.79342 3.14906 3.20170 3.35909 3.66226 3.82149 3.88574 3.97776 4.05833 4.08613 4.16672 4.24956 4.43737 4.66865 4.70136 4.83236 4.85058 4.89439 4.90113 5.09274 5.13560 5.18683 5.20729 5.34239 5.36024 5.40460 5.58040 5.79545 5.79863 5.82735 5.89181 6.26499 6.34225 6.41490 6.88462 7.17325 7.25135 7.39659 8.94573 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.001994 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.778612 B =14038.743840 C =14758.615401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.096 4.096 11 C -0.095 4.095 12 C -0.129 4.129 13 C 0.521 3.479 14 O -0.579 6.579 15 N -0.702 5.702 16 C 0.173 3.827 17 H 0.127 0.873 18 C 0.506 3.494 19 N -0.830 5.830 20 O -0.578 6.578 21 C -0.110 4.110 22 C -0.081 4.081 23 C -0.150 4.150 24 C 0.090 3.910 25 F -0.147 7.147 26 C -0.145 4.145 27 C -0.068 4.068 28 H 0.263 0.737 29 H -0.013 1.013 30 H -0.018 1.018 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.418 0.582 38 H 0.409 0.591 39 H 0.417 0.583 40 H 0.141 0.859 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.935 -34.360 -3.837 35.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.168 4.168 13 C 0.309 3.691 14 O -0.458 6.458 15 N -0.355 5.355 16 C 0.064 3.936 17 H 0.144 0.856 18 C 0.289 3.711 19 N -0.395 5.395 20 O -0.457 6.457 21 C -0.111 4.111 22 C -0.099 4.099 23 C -0.168 4.168 24 C 0.070 3.930 25 F -0.126 7.126 26 C -0.163 4.163 27 C -0.086 4.086 28 H 0.071 0.929 29 H 0.005 0.995 30 H 0.001 0.999 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.130 0.870 36 H 0.144 0.856 37 H 0.256 0.744 38 H 0.241 0.759 39 H 0.248 0.752 40 H 0.159 0.841 41 H 0.169 0.831 42 H 0.178 0.822 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.254 -33.718 -3.409 34.881 hybrid contribution 0.188 0.479 0.193 0.549 sum 8.442 -33.239 -3.216 34.445 Atomic orbital electron populations 1.70130 1.08045 1.27787 1.51813 1.26110 0.95824 1.03771 0.94818 0.85424 0.78156 0.77655 0.79332 1.18807 1.21062 1.19030 1.21726 0.93734 0.92220 1.50319 0.91587 1.19055 0.94693 0.93782 0.94318 1.21447 0.97837 0.92730 1.01317 1.21236 0.97458 0.93566 1.01055 1.21674 0.99076 0.89353 1.06710 1.21174 0.87859 0.86511 0.73517 1.90681 1.16157 1.88176 1.50772 1.45641 1.10908 1.03543 1.75441 1.19594 0.97532 0.83608 0.92836 0.85573 1.21229 0.77218 0.81103 0.91594 1.43612 1.58213 1.23757 1.13934 1.90765 1.55438 1.52212 1.47266 1.19497 0.94121 0.96891 1.00587 1.20954 0.92704 0.97858 0.98430 1.21290 1.02172 0.94958 0.98408 1.18085 0.89874 0.88239 0.96761 1.91508 1.75191 1.61429 1.84472 1.21388 0.91473 1.01113 1.02358 1.21140 1.01779 0.91993 0.93689 0.92866 0.99474 0.99926 0.92396 0.91743 0.93273 0.94343 0.86956 0.85645 0.74353 0.75898 0.75175 0.84104 0.83118 0.82223 0.81619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.67 13.29 21.45 0.28 -59.39 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -31.92 9.11 25.60 0.23 -31.68 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 9 C 0.02 1.04 4.97 29.85 0.15 1.19 16 10 C -0.10 -4.02 5.15 30.59 0.16 -3.86 16 11 C -0.09 -3.55 4.50 30.59 0.14 -3.41 16 12 C -0.13 -3.35 5.70 29.85 0.17 -3.18 16 13 C 0.52 14.54 7.66 87.66 0.67 15.21 16 14 O -0.58 -21.42 15.64 -3.02 -0.05 -21.47 16 15 N -0.70 -13.45 4.56 -449.69 -2.05 -15.50 16 16 C 0.17 2.78 2.58 43.50 0.11 2.90 16 17 H 0.13 2.04 7.44 -2.39 -0.02 2.02 16 18 C 0.51 10.14 7.44 87.66 0.65 10.80 16 19 N -0.83 -9.06 8.77 -173.53 -1.52 -10.58 16 20 O -0.58 -17.69 17.16 -3.03 -0.05 -17.74 16 21 C -0.11 -1.10 4.75 -19.86 -0.09 -1.19 16 22 C -0.08 -0.79 9.05 22.26 0.20 -0.59 16 23 C -0.15 -1.43 10.03 22.31 0.22 -1.21 16 24 C 0.09 0.96 7.30 22.37 0.16 1.12 16 25 F -0.15 -2.01 17.27 44.97 0.78 -1.23 16 26 C -0.14 -1.01 10.03 22.31 0.22 -0.79 16 27 C -0.07 -0.41 9.51 22.26 0.21 -0.20 16 28 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 29 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 30 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 34 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.42 5.51 6.85 -92.71 -0.64 4.87 16 38 H 0.41 3.98 8.93 -92.71 -0.83 3.15 16 39 H 0.42 1.60 8.56 -92.70 -0.79 0.81 16 40 H 0.14 1.17 6.90 -2.91 -0.02 1.15 16 41 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 43 H 0.17 0.10 8.04 -2.91 -0.02 0.08 16 Total: -1.00 -86.42 374.72 1.90 -84.52 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -1.19 Total: 8.92 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 3.68 Total: -14.91 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.29 Total: -85.47 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.10 Total: -39.21 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -86.42 1.90 -84.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588681367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.440 kcal (2) G-P(sol) polarization free energy of solvation -86.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds