Wall clock time and date at job start Tue Mar 31 2020 13:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48507 * 109.46787 * 239.99712 * 3 2 1 5 5 H 1.48496 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47320 * 119.99940 * 3 2 1 7 7 C 1.37885 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99455 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46925 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.46917 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47077 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99674 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00446 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00578 * 180.02562 * 15 13 12 17 17 H 1.08998 * 109.46469 * 324.99569 * 16 15 13 18 18 C 1.50697 * 109.47294 * 84.99498 * 16 15 13 19 19 N 1.34768 * 120.00082 * 180.02562 * 18 16 15 20 20 O 1.21280 * 119.99907 * 0.02562 * 18 16 15 21 21 C 1.50696 * 109.47134 * 204.99832 * 16 15 13 22 22 C 1.38248 * 119.97128 * 139.99619 * 21 16 15 23 23 C 1.38196 * 120.02483 * 179.97438 * 22 21 16 24 24 C 1.38458 * 119.97492 * 0.02562 * 23 22 21 25 25 F 1.35104 * 120.02786 * 179.97438 * 24 23 22 26 26 C 1.38465 * 119.94675 * 0.24873 * 24 23 22 27 27 C 1.38197 * 119.97511 * 359.47283 * 26 24 23 28 28 H 0.97003 * 119.99676 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47280 * 60.00063 * 9 7 2 30 30 H 1.09000 * 109.47107 * 299.99641 * 9 7 2 31 31 H 1.08997 * 109.47030 * 60.00117 * 10 9 7 32 32 H 1.09000 * 109.47212 * 299.99783 * 10 9 7 33 33 H 1.09003 * 109.46819 * 59.99930 * 11 10 9 34 34 H 1.08995 * 109.47304 * 300.00631 * 11 10 9 35 35 H 1.09003 * 109.47307 * 60.00384 * 12 11 10 36 36 H 1.09000 * 109.47859 * 300.00026 * 12 11 10 37 37 H 0.97005 * 119.99750 * 359.97438 * 15 13 12 38 38 H 0.97004 * 120.00156 * 359.97438 * 19 18 16 39 39 H 0.97006 * 120.00486 * 180.02562 * 19 18 16 40 40 H 1.08002 * 119.98915 * 359.97438 * 22 21 16 41 41 H 1.07995 * 120.01604 * 180.02562 * 23 22 21 42 42 H 1.08007 * 120.01064 * 179.75151 * 26 24 23 43 43 H 1.07994 * 119.98821 * 180.29814 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4743 -6.1500 0.0005 13 6 1.7208 -7.4552 0.0005 14 8 0.5080 -7.4551 0.0015 15 7 2.3946 -8.6224 0.0005 16 6 1.6621 -9.8911 0.0000 17 1 0.7513 -9.7849 0.5892 18 6 1.3042 -10.2639 -1.4156 19 7 0.6227 -11.4004 -1.6614 20 8 1.6293 -9.5412 -2.3337 21 6 2.5259 -10.9701 0.6005 22 6 1.9674 -11.9125 1.4437 23 6 2.7584 -12.9028 1.9946 24 6 4.1109 -12.9506 1.7021 25 9 4.8853 -13.9179 2.2405 26 6 4.6702 -12.0027 0.8619 27 6 3.8762 -11.0168 0.3076 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 0.8532 -5.0451 -0.8886 34 1 0.8537 -5.0446 0.8913 35 1 3.1016 -6.0923 0.8901 36 1 3.1004 -6.0924 -0.8899 37 1 3.3646 -8.6224 0.0002 38 1 0.3630 -11.9786 -0.9271 39 1 0.3926 -11.6406 -2.5726 40 1 0.9124 -11.8749 1.6721 41 1 2.3218 -13.6392 2.6530 42 1 5.7259 -12.0366 0.6363 43 1 4.3113 -10.2803 -0.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588681372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:52 Heat of formation + Delta-G solvation = -116.921726 kcal Electronic energy + Delta-G solvation = -25799.124884 eV Core-core repulsion = 21757.792790 eV Total energy + Delta-G solvation = -4041.332094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.43668 -41.01316 -39.27843 -38.89869 -35.23626 -34.72857 -34.05969 -32.60961 -31.84818 -31.47126 -29.66704 -27.38369 -25.38023 -23.83260 -22.78389 -22.45720 -20.82363 -20.28517 -19.92561 -18.38533 -18.05993 -17.49813 -17.30946 -16.62262 -16.21155 -16.12891 -15.92675 -15.52107 -15.43779 -14.91903 -14.54886 -14.43075 -14.21474 -14.08326 -13.81353 -13.67297 -13.20079 -12.89624 -12.58081 -12.24262 -12.13477 -11.65215 -11.63763 -11.55468 -10.93429 -10.68843 -10.50935 -10.47790 -10.36275 -10.03241 -9.91532 -9.77052 -9.56674 -9.42374 -9.19351 -9.11600 -8.94924 -8.26521 -5.91508 -3.93829 0.39565 0.57024 2.26716 2.55880 2.77256 2.94871 3.38023 3.42141 3.44177 3.45045 3.64357 3.90805 4.05962 4.25861 4.52041 4.55029 4.57910 4.61777 4.78143 5.05568 5.23302 5.25557 5.36984 5.42489 5.44266 5.48269 5.54439 5.71429 5.89958 6.06800 6.19469 6.20079 6.35277 6.42553 6.59692 6.89493 6.92861 7.06967 7.23864 7.31590 7.78052 7.90323 7.94849 8.10203 8.20053 8.51991 9.13668 9.69396 11.19785 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.001994 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.206738 B =14040.071414 C =14759.440918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.523 3.477 14 O -0.531 6.531 15 N -0.717 5.717 16 C 0.171 3.829 17 H 0.125 0.875 18 C 0.511 3.489 19 N -0.852 5.852 20 O -0.522 6.522 21 C -0.106 4.106 22 C -0.076 4.076 23 C -0.148 4.148 24 C 0.105 3.895 25 F -0.137 7.137 26 C -0.146 4.146 27 C -0.076 4.076 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.404 0.596 38 H 0.400 0.600 39 H 0.403 0.597 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -33.240 3.032 34.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.176 4.176 13 C 0.311 3.689 14 O -0.406 6.406 15 N -0.371 5.371 16 C 0.062 3.938 17 H 0.143 0.857 18 C 0.293 3.707 19 N -0.416 5.416 20 O -0.396 6.396 21 C -0.107 4.107 22 C -0.095 4.095 23 C -0.166 4.166 24 C 0.086 3.914 25 F -0.116 7.116 26 C -0.165 4.165 27 C -0.095 4.095 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.240 0.760 38 H 0.228 0.772 39 H 0.235 0.765 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.317 -32.506 2.584 33.215 hybrid contribution 0.838 0.236 0.050 0.872 sum 7.155 -32.269 2.634 33.158 Atomic orbital electron populations 1.69968 1.06035 1.26571 1.50909 1.25049 0.94853 0.99216 0.95512 0.86666 0.79561 0.83260 0.78531 1.20298 1.21354 1.20302 1.21252 0.92942 0.91214 1.50417 0.92810 1.19093 0.94070 0.91253 0.97308 1.21650 0.99082 0.93961 1.00091 1.21456 0.97016 0.92652 1.02987 1.21785 1.00164 0.91484 1.04180 1.21153 0.88469 0.85349 0.73943 1.90700 1.14220 1.87460 1.48192 1.45828 1.10125 1.03856 1.77298 1.19524 0.97000 0.83731 0.93562 0.85708 1.20906 0.77446 0.80834 0.91520 1.43770 1.60159 1.24877 1.12840 1.90788 1.52852 1.50261 1.45694 1.19665 0.94377 0.97025 0.99677 1.20898 1.00523 0.93060 0.94980 1.21161 0.92097 1.00873 1.02503 1.17805 0.89190 0.88102 0.96317 1.91532 1.74805 1.60984 1.84244 1.21176 1.01506 0.95211 0.98580 1.20871 0.92693 0.97661 0.98244 0.93023 0.96581 0.96598 0.93471 0.93427 0.91740 0.91788 0.88977 0.88816 0.76019 0.77226 0.76535 0.84188 0.84096 0.84135 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 13 C 0.52 7.45 7.66 -10.98 -0.08 7.36 16 14 O -0.53 -9.64 15.64 5.55 0.09 -9.55 16 15 N -0.72 -7.34 4.56 -56.07 -0.26 -7.59 16 16 C 0.17 1.49 2.58 -70.24 -0.18 1.31 16 17 H 0.13 1.09 7.44 -51.93 -0.39 0.71 16 18 C 0.51 5.32 7.44 -10.99 -0.08 5.23 16 19 N -0.85 -5.25 8.77 31.22 0.27 -4.98 16 20 O -0.52 -7.94 17.16 5.56 0.10 -7.84 16 21 C -0.11 -0.64 4.74 -104.62 -0.50 -1.14 16 22 C -0.08 -0.34 9.50 -39.59 -0.38 -0.71 16 23 C -0.15 -0.71 10.03 -39.52 -0.40 -1.10 16 24 C 0.11 0.66 7.30 -39.42 -0.29 0.37 16 25 F -0.14 -1.02 17.27 2.25 0.04 -0.98 16 26 C -0.15 -0.82 10.03 -39.51 -0.40 -1.22 16 27 C -0.08 -0.44 9.05 -39.59 -0.36 -0.80 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.40 3.06 6.87 -40.82 -0.28 2.78 16 38 H 0.40 1.22 8.55 -40.82 -0.35 0.87 16 39 H 0.40 2.20 8.93 -40.82 -0.36 1.84 16 40 H 0.14 0.29 8.04 -52.49 -0.42 -0.13 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.14 0.68 6.91 -52.49 -0.36 0.32 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -38.33 374.73 -7.95 -46.28 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.93 Total: -0.23 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.63 Total: -10.79 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.75 Total: -39.66 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.18 Total: -17.40 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.33 -7.95 -46.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588681372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.642 kcal (2) G-P(sol) polarization free energy of solvation -38.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds