Wall clock time and date at job start Tue Mar 31 2020 13:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48507 * 109.46787 * 239.99712 * 3 2 1 5 5 H 1.48496 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47320 * 119.99940 * 3 2 1 7 7 C 1.37885 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99455 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46925 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.46917 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47077 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99674 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00446 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00578 * 180.02562 * 15 13 12 17 17 H 1.08998 * 109.46469 * 324.99569 * 16 15 13 18 18 C 1.50697 * 109.47294 * 84.99498 * 16 15 13 19 19 N 1.34768 * 120.00082 * 180.02562 * 18 16 15 20 20 O 1.21280 * 119.99907 * 0.02562 * 18 16 15 21 21 C 1.50696 * 109.47134 * 204.99832 * 16 15 13 22 22 C 1.38248 * 119.97128 * 139.99619 * 21 16 15 23 23 C 1.38196 * 120.02483 * 179.97438 * 22 21 16 24 24 C 1.38458 * 119.97492 * 0.02562 * 23 22 21 25 25 F 1.35104 * 120.02786 * 179.97438 * 24 23 22 26 26 C 1.38465 * 119.94675 * 0.24873 * 24 23 22 27 27 C 1.38197 * 119.97511 * 359.47283 * 26 24 23 28 28 H 0.97003 * 119.99676 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47280 * 60.00063 * 9 7 2 30 30 H 1.09000 * 109.47107 * 299.99641 * 9 7 2 31 31 H 1.08997 * 109.47030 * 60.00117 * 10 9 7 32 32 H 1.09000 * 109.47212 * 299.99783 * 10 9 7 33 33 H 1.09003 * 109.46819 * 59.99930 * 11 10 9 34 34 H 1.08995 * 109.47304 * 300.00631 * 11 10 9 35 35 H 1.09003 * 109.47307 * 60.00384 * 12 11 10 36 36 H 1.09000 * 109.47859 * 300.00026 * 12 11 10 37 37 H 0.97005 * 119.99750 * 359.97438 * 15 13 12 38 38 H 0.97004 * 120.00156 * 359.97438 * 19 18 16 39 39 H 0.97006 * 120.00486 * 180.02562 * 19 18 16 40 40 H 1.08002 * 119.98915 * 359.97438 * 22 21 16 41 41 H 1.07995 * 120.01604 * 180.02562 * 23 22 21 42 42 H 1.08007 * 120.01064 * 179.75151 * 26 24 23 43 43 H 1.07994 * 119.98821 * 180.29814 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4743 -6.1500 0.0005 13 6 1.7208 -7.4552 0.0005 14 8 0.5080 -7.4551 0.0015 15 7 2.3946 -8.6224 0.0005 16 6 1.6621 -9.8911 0.0000 17 1 0.7513 -9.7849 0.5892 18 6 1.3042 -10.2639 -1.4156 19 7 0.6227 -11.4004 -1.6614 20 8 1.6293 -9.5412 -2.3337 21 6 2.5259 -10.9701 0.6005 22 6 1.9674 -11.9125 1.4437 23 6 2.7584 -12.9028 1.9946 24 6 4.1109 -12.9506 1.7021 25 9 4.8853 -13.9179 2.2405 26 6 4.6702 -12.0027 0.8619 27 6 3.8762 -11.0168 0.3076 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 0.8532 -5.0451 -0.8886 34 1 0.8537 -5.0446 0.8913 35 1 3.1016 -6.0923 0.8901 36 1 3.1004 -6.0924 -0.8899 37 1 3.3646 -8.6224 0.0002 38 1 0.3630 -11.9786 -0.9271 39 1 0.3926 -11.6406 -2.5726 40 1 0.9124 -11.8749 1.6721 41 1 2.3218 -13.6392 2.6530 42 1 5.7259 -12.0366 0.6363 43 1 4.3113 -10.2803 -0.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588681372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:51 Heat of formation + Delta-G solvation = -145.007519 kcal Electronic energy + Delta-G solvation = -25800.342775 eV Core-core repulsion = 21757.792790 eV Total energy + Delta-G solvation = -4042.549986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.92952 -41.78185 -40.14443 -39.64463 -36.68938 -35.90558 -34.80912 -34.59487 -32.41104 -32.14991 -31.20942 -28.34526 -27.01336 -24.44542 -23.98296 -23.31653 -21.95479 -21.46946 -21.20795 -18.93802 -18.72291 -18.40683 -18.17645 -18.16785 -17.22626 -16.79587 -16.75235 -16.60430 -16.51599 -16.17184 -15.55628 -15.48027 -15.13760 -14.91552 -14.52893 -14.49997 -14.39712 -13.95486 -13.66360 -13.57636 -13.38482 -13.27174 -12.79254 -12.77663 -12.36368 -12.15082 -12.11713 -12.02624 -11.59338 -11.36044 -11.35671 -11.18815 -10.85996 -10.72991 -10.53287 -10.28174 -10.13692 -9.66974 -8.17447 -6.29581 -0.05536 0.20030 1.40732 1.45087 1.48451 1.52833 1.55491 1.98488 2.38584 2.42909 2.79302 3.14889 3.20157 3.35882 3.66246 3.82134 3.88600 3.97724 4.05852 4.08628 4.16691 4.24951 4.43723 4.66849 4.70150 4.83241 4.85031 4.89431 4.90126 5.09320 5.13557 5.18619 5.20749 5.34231 5.35995 5.40443 5.58040 5.79565 5.79841 5.82678 5.89185 6.26523 6.34198 6.41503 6.88483 7.17320 7.25100 7.39646 8.94573 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.001994 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.206738 B =14040.071414 C =14759.440918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.096 4.096 11 C -0.095 4.095 12 C -0.129 4.129 13 C 0.521 3.479 14 O -0.579 6.579 15 N -0.702 5.702 16 C 0.173 3.827 17 H 0.127 0.873 18 C 0.506 3.494 19 N -0.830 5.830 20 O -0.578 6.578 21 C -0.110 4.110 22 C -0.068 4.068 23 C -0.145 4.145 24 C 0.090 3.910 25 F -0.147 7.147 26 C -0.150 4.150 27 C -0.081 4.081 28 H 0.263 0.737 29 H -0.018 1.018 30 H -0.013 1.013 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.418 0.582 38 H 0.417 0.583 39 H 0.409 0.591 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.945 -34.366 3.847 35.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.168 4.168 13 C 0.309 3.691 14 O -0.458 6.458 15 N -0.355 5.355 16 C 0.064 3.936 17 H 0.144 0.856 18 C 0.289 3.711 19 N -0.395 5.395 20 O -0.457 6.457 21 C -0.111 4.111 22 C -0.086 4.086 23 C -0.163 4.163 24 C 0.070 3.930 25 F -0.126 7.126 26 C -0.168 4.168 27 C -0.099 4.099 28 H 0.071 0.929 29 H 0.001 0.999 30 H 0.005 0.995 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.256 0.744 38 H 0.248 0.752 39 H 0.241 0.759 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.260 -33.722 3.421 34.887 hybrid contribution 0.191 0.476 -0.195 0.549 sum 8.451 -33.246 3.226 34.455 Atomic orbital electron populations 1.70131 1.08046 1.27788 1.51812 1.26113 0.95825 1.03773 0.94817 0.85424 0.78155 0.77652 0.79334 1.19039 1.21060 1.18795 1.21726 0.93734 0.92220 1.50320 0.91588 1.19054 0.94693 0.93782 0.94317 1.21451 0.97837 0.92729 1.01315 1.21238 0.97458 0.93567 1.01054 1.21674 0.99075 0.89352 1.06708 1.21176 0.87859 0.86512 0.73516 1.90683 1.16154 1.88180 1.50779 1.45640 1.10907 1.03542 1.75431 1.19593 0.97531 0.83612 0.92835 0.85572 1.21228 0.77202 0.81124 0.91595 1.43610 1.58243 1.23706 1.13955 1.90765 1.55434 1.52221 1.47264 1.19498 0.94147 0.96869 1.00584 1.21141 1.01771 0.91970 0.93725 1.21386 0.91491 1.01120 1.02327 1.18089 0.89867 0.88199 0.96806 1.91507 1.75189 1.61430 1.84471 1.21293 1.02138 0.94983 0.98410 1.20954 0.92701 0.97917 0.98372 0.92866 0.99925 0.99476 0.91743 0.92394 0.94350 0.93267 0.85646 0.86955 0.74354 0.75175 0.75895 0.81620 0.82225 0.83116 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.68 13.29 21.45 0.28 -59.39 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.02 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.02 1.04 4.97 29.85 0.15 1.19 16 10 C -0.10 -4.02 5.15 30.60 0.16 -3.86 16 11 C -0.09 -3.55 4.50 30.59 0.14 -3.41 16 12 C -0.13 -3.35 5.70 29.85 0.17 -3.18 16 13 C 0.52 14.54 7.66 87.66 0.67 15.21 16 14 O -0.58 -21.43 15.64 -3.05 -0.05 -21.48 16 15 N -0.70 -13.45 4.56 -449.69 -2.05 -15.50 16 16 C 0.17 2.78 2.58 43.50 0.11 2.90 16 17 H 0.13 2.04 7.44 -2.39 -0.02 2.03 16 18 C 0.51 10.14 7.44 87.66 0.65 10.79 16 19 N -0.83 -9.06 8.77 -173.55 -1.52 -10.58 16 20 O -0.58 -17.68 17.16 -3.03 -0.05 -17.74 16 21 C -0.11 -1.10 4.74 -19.86 -0.09 -1.19 16 22 C -0.07 -0.41 9.50 22.26 0.21 -0.20 16 23 C -0.14 -1.01 10.03 22.31 0.22 -0.79 16 24 C 0.09 0.96 7.30 22.38 0.16 1.12 16 25 F -0.15 -2.01 17.27 44.97 0.78 -1.23 16 26 C -0.15 -1.43 10.03 22.31 0.22 -1.21 16 27 C -0.08 -0.79 9.05 22.26 0.20 -0.59 16 28 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 29 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 30 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 34 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 35 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.42 5.51 6.87 -92.70 -0.64 4.88 16 38 H 0.42 1.60 8.55 -92.70 -0.79 0.81 16 39 H 0.41 3.98 8.93 -92.70 -0.83 3.15 16 40 H 0.17 0.10 8.04 -2.91 -0.02 0.08 16 41 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 42 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.14 1.17 6.91 -2.91 -0.02 1.15 16 Total: -1.00 -86.42 374.73 1.90 -84.52 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -1.19 Total: 8.93 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 3.67 Total: -14.91 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.29 Total: -85.47 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.10 Total: -39.22 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -86.42 1.90 -84.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588681372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.487 kcal (2) G-P(sol) polarization free energy of solvation -86.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds