Wall clock time and date at job start Tue Mar 31 2020 13:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48501 * 109.46908 * 269.99758 * 3 2 1 5 5 H 1.48508 * 109.47066 * 29.99166 * 3 2 1 6 6 H 1.48497 * 109.47692 * 149.99720 * 3 2 1 7 7 C 1.37874 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00037 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47121 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99930 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46917 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47135 * 65.00073 * 12 11 10 14 14 C 1.47190 * 111.00289 * 66.04369 * 13 12 11 15 15 C 1.52979 * 108.85506 * 192.44318 * 14 13 12 16 16 N 1.46008 * 110.04225 * 309.63002 * 15 14 13 17 17 C 1.33712 * 122.92796 * 18.16519 * 16 15 14 18 18 O 1.21286 * 118.62532 * 178.31476 * 17 16 15 19 19 C 1.47159 * 111.23183 * 188.92293 * 13 12 11 20 20 H 1.09007 * 109.20717 * 306.55351 * 19 13 12 21 21 C 1.50703 * 109.37293 * 66.22659 * 19 13 12 22 22 C 1.38216 * 120.01178 * 25.64248 * 21 19 13 23 23 C 1.38218 * 120.02978 * 179.97438 * 22 21 19 24 24 C 1.38268 * 120.04852 * 0.02562 * 23 22 21 25 25 C 1.38181 * 120.02385 * 359.97438 * 24 23 22 26 26 C 1.38440 * 120.01287 * 205.35885 * 21 19 13 27 27 F 1.35096 * 120.02451 * 0.02562 * 26 21 19 28 28 H 0.97004 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46586 * 60.00125 * 9 7 2 30 30 H 1.08994 * 109.47033 * 299.99793 * 9 7 2 31 31 H 1.08994 * 109.47270 * 60.00255 * 11 10 9 32 32 H 1.09003 * 109.47044 * 299.99892 * 11 10 9 33 33 H 1.09002 * 109.47199 * 305.00022 * 12 11 10 34 34 H 1.09000 * 109.46619 * 184.99548 * 12 11 10 35 35 H 1.09002 * 109.59473 * 72.59110 * 14 13 12 36 36 H 1.09003 * 109.59189 * 312.28994 * 14 13 12 37 37 H 1.08996 * 109.38005 * 69.80889 * 15 14 13 38 38 H 1.09004 * 109.37489 * 189.45825 * 15 14 13 39 39 H 0.97010 * 118.53828 * 198.18567 * 16 15 14 40 40 H 1.08008 * 119.98754 * 359.95368 * 22 21 19 41 41 H 1.07998 * 119.98316 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.99241 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.01121 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 7 3.4072 -5.8878 1.2565 14 6 2.5586 -6.2418 2.4058 15 6 3.2882 -5.8602 3.6951 16 7 4.6460 -6.3968 3.6793 17 6 5.2567 -6.7962 2.5588 18 8 6.3977 -7.2009 2.6316 19 6 4.5887 -6.7641 1.2133 20 1 4.2776 -7.7724 0.9397 21 6 5.5597 -6.2438 0.1849 22 6 5.5600 -4.9027 -0.1494 23 6 6.4507 -4.4250 -1.0921 24 6 7.3421 -5.2881 -1.7023 25 6 7.3437 -6.6293 -1.3696 26 6 6.4557 -7.1079 -0.4210 27 9 6.4598 -8.4180 -0.0912 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 0.9453 -4.9822 -0.8902 32 1 0.9446 -4.9827 0.8897 33 1 3.3223 -5.7955 -0.8407 34 1 2.1821 -6.9374 -0.0893 35 1 2.3636 -7.3142 2.3998 36 1 1.6156 -5.6984 2.3449 37 1 3.3294 -4.7743 3.7796 38 1 2.7484 -6.2674 4.5501 39 1 5.1264 -6.4670 4.5191 40 1 4.8636 -4.2277 0.3260 41 1 6.4500 -3.3770 -1.3531 42 1 8.0375 -4.9140 -2.4391 43 1 8.0398 -7.3034 -1.8467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590173262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:32 Heat of formation + Delta-G solvation = -83.447280 kcal Electronic energy + Delta-G solvation = -28091.135543 eV Core-core repulsion = 24051.255009 eV Total energy + Delta-G solvation = -4039.880533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.77040 -40.75173 -38.61682 -37.74504 -36.34227 -34.85889 -32.78394 -31.93489 -30.39155 -29.73875 -28.82023 -27.03998 -25.34201 -23.96105 -22.62496 -22.31028 -21.77107 -21.03370 -19.17804 -17.71342 -17.43135 -16.92162 -16.42558 -16.24542 -16.00655 -15.66827 -15.45598 -15.32761 -15.00892 -14.56182 -14.37230 -14.09189 -13.95218 -13.75454 -13.49239 -13.26821 -12.99832 -12.72278 -12.37746 -12.11101 -12.00455 -11.81519 -11.59649 -11.43773 -11.22913 -10.93458 -10.86535 -10.79507 -10.45773 -10.10525 -9.91268 -9.15269 -9.12162 -8.85462 -8.79554 -8.54292 -8.48549 -8.17785 -6.12958 -4.14080 1.20533 1.37868 2.54314 3.16556 3.28683 3.34385 3.39192 3.54951 3.74207 4.31857 4.36746 4.41817 4.57446 4.65832 4.78377 4.89579 4.96964 5.04684 5.09776 5.24154 5.26935 5.37888 5.44299 5.46823 5.56663 5.60195 5.79407 5.86812 5.97044 6.00963 6.11486 6.18690 6.27698 6.51181 6.57246 6.66441 6.83231 6.91608 7.03375 7.07760 7.18341 7.40347 7.78086 8.13669 8.13829 8.56621 8.99720 9.51063 10.98573 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.004044 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.550034 B = 6922.290042 C = 7913.591683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.379 6.379 11 C 0.068 3.932 12 C 0.054 3.946 13 N -0.510 5.510 14 C 0.031 3.969 15 C 0.114 3.886 16 N -0.716 5.716 17 C 0.534 3.466 18 O -0.542 6.542 19 C 0.114 3.886 20 H 0.081 0.919 21 C -0.116 4.116 22 C -0.049 4.049 23 C -0.134 4.134 24 C -0.087 4.087 25 C -0.168 4.168 26 C 0.120 3.880 27 F -0.138 7.138 28 H 0.263 0.737 29 H 0.002 0.998 30 H 0.003 0.997 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.400 0.600 40 H 0.160 0.840 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.216 -14.727 2.382 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.299 6.299 11 C -0.010 4.010 12 C -0.073 4.073 13 N -0.235 5.235 14 C -0.097 4.097 15 C -0.011 4.011 16 N -0.369 5.369 17 C 0.319 3.681 18 O -0.419 6.419 19 C 0.003 3.997 20 H 0.098 0.902 21 C -0.118 4.118 22 C -0.067 4.067 23 C -0.153 4.153 24 C -0.105 4.105 25 C -0.187 4.187 26 C 0.100 3.900 27 F -0.117 7.117 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.236 0.764 40 H 0.177 0.823 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.888 -14.332 2.297 16.520 hybrid contribution -0.259 -0.181 0.275 0.419 sum 7.630 -14.513 2.573 16.597 Atomic orbital electron populations 1.69957 1.06104 1.27096 1.50742 1.24924 0.94918 0.99358 0.95226 0.86386 0.79729 0.82448 0.78225 1.20516 1.21169 1.19606 1.21028 0.94022 0.89272 1.50516 0.91537 1.20168 0.88799 0.83791 0.95111 1.87918 1.34702 1.12228 1.95036 1.22250 0.93486 0.86159 0.99113 1.22306 0.96396 0.96793 0.91768 1.62417 1.06558 1.50831 1.03731 1.22588 0.97799 0.99435 0.89900 1.21550 0.81485 1.00415 0.97614 1.45510 1.17094 1.64690 1.09588 1.19784 0.86177 0.76518 0.85583 1.90765 1.17559 1.47122 1.86426 1.20407 0.91045 0.96484 0.91762 0.90160 1.19241 0.98466 0.94614 0.99475 1.21366 0.96632 0.93877 0.94803 1.21328 0.95940 1.00614 0.97368 1.21054 0.98249 0.92330 0.98904 1.20999 1.00716 0.97099 0.99884 1.17471 0.97660 0.77927 0.96940 1.91468 1.95679 1.32962 1.91576 0.92719 0.98036 0.97930 0.93905 0.94401 0.89251 0.93740 0.93955 0.87509 0.89896 0.90142 0.76412 0.82288 0.84964 0.85313 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.51 -14.26 9.43 -34.44 -0.32 -14.59 16 8 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 9 C 0.20 5.01 5.69 36.01 0.20 5.22 16 10 O -0.38 -8.21 10.27 -35.23 -0.36 -8.57 16 11 C 0.07 1.11 6.02 37.16 0.22 1.33 16 12 C 0.05 0.74 4.91 -3.82 -0.02 0.72 16 13 N -0.51 -6.85 3.35 -229.24 -0.77 -7.62 16 14 C 0.03 0.33 5.45 -3.68 -0.02 0.31 16 15 C 0.11 1.11 7.39 -4.32 -0.03 1.08 16 16 N -0.72 -8.29 5.52 -61.07 -0.34 -8.63 16 17 C 0.53 7.89 7.37 -11.68 -0.09 7.81 16 18 O -0.54 -9.75 16.93 5.55 0.09 -9.66 16 19 C 0.11 1.60 1.89 -70.09 -0.13 1.47 16 20 H 0.08 1.07 7.76 -51.92 -0.40 0.67 16 21 C -0.12 -1.74 3.90 -104.55 -0.41 -2.14 16 22 C -0.05 -0.74 8.12 -39.60 -0.32 -1.06 16 23 C -0.13 -1.82 10.04 -39.58 -0.40 -2.22 16 24 C -0.09 -1.04 10.04 -39.59 -0.40 -1.43 16 25 C -0.17 -2.12 10.03 -39.51 -0.40 -2.52 16 26 C 0.12 1.76 6.86 -39.42 -0.27 1.49 16 27 F -0.14 -2.12 16.53 2.25 0.04 -2.08 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.58 6.14 -51.93 -0.32 0.26 16 33 H 0.09 1.30 6.32 -51.93 -0.33 0.97 16 34 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 35 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.11 1.15 5.96 -51.93 -0.31 0.84 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.99 8.84 -40.82 -0.36 3.63 16 40 H 0.16 2.74 7.22 -52.48 -0.38 2.36 16 41 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -32.81 358.82 -8.55 -41.36 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.87 Total: 1.99 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.47 Total: -3.06 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.37 Total: -41.60 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.27 Total: -18.22 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.81 -8.55 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590173262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.088 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds