Wall clock time and date at job start Tue Mar 31 2020 13:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48501 * 109.46908 * 269.99758 * 3 2 1 5 5 H 1.48508 * 109.47066 * 29.99166 * 3 2 1 6 6 H 1.48497 * 109.47692 * 149.99720 * 3 2 1 7 7 C 1.37874 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00037 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47121 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99930 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46917 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47135 * 65.00073 * 12 11 10 14 14 C 1.47190 * 111.00289 * 66.04369 * 13 12 11 15 15 C 1.52979 * 108.85506 * 192.44318 * 14 13 12 16 16 N 1.46008 * 110.04225 * 309.63002 * 15 14 13 17 17 C 1.33712 * 122.92796 * 18.16519 * 16 15 14 18 18 O 1.21286 * 118.62532 * 178.31476 * 17 16 15 19 19 C 1.47159 * 111.23183 * 188.92293 * 13 12 11 20 20 H 1.09007 * 109.20717 * 306.55351 * 19 13 12 21 21 C 1.50703 * 109.37293 * 66.22659 * 19 13 12 22 22 C 1.38216 * 120.01178 * 25.64248 * 21 19 13 23 23 C 1.38218 * 120.02978 * 179.97438 * 22 21 19 24 24 C 1.38268 * 120.04852 * 0.02562 * 23 22 21 25 25 C 1.38181 * 120.02385 * 359.97438 * 24 23 22 26 26 C 1.38440 * 120.01287 * 205.35885 * 21 19 13 27 27 F 1.35096 * 120.02451 * 0.02562 * 26 21 19 28 28 H 0.97004 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46586 * 60.00125 * 9 7 2 30 30 H 1.08994 * 109.47033 * 299.99793 * 9 7 2 31 31 H 1.08994 * 109.47270 * 60.00255 * 11 10 9 32 32 H 1.09003 * 109.47044 * 299.99892 * 11 10 9 33 33 H 1.09002 * 109.47199 * 305.00022 * 12 11 10 34 34 H 1.09000 * 109.46619 * 184.99548 * 12 11 10 35 35 H 1.09002 * 109.59473 * 72.59110 * 14 13 12 36 36 H 1.09003 * 109.59189 * 312.28994 * 14 13 12 37 37 H 1.08996 * 109.38005 * 69.80889 * 15 14 13 38 38 H 1.09004 * 109.37489 * 189.45825 * 15 14 13 39 39 H 0.97010 * 118.53828 * 198.18567 * 16 15 14 40 40 H 1.08008 * 119.98754 * 359.95368 * 22 21 19 41 41 H 1.07998 * 119.98316 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.99241 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.01121 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 7 3.4072 -5.8878 1.2565 14 6 2.5586 -6.2418 2.4058 15 6 3.2882 -5.8602 3.6951 16 7 4.6460 -6.3968 3.6793 17 6 5.2567 -6.7962 2.5588 18 8 6.3977 -7.2009 2.6316 19 6 4.5887 -6.7641 1.2133 20 1 4.2776 -7.7724 0.9397 21 6 5.5597 -6.2438 0.1849 22 6 5.5600 -4.9027 -0.1494 23 6 6.4507 -4.4250 -1.0921 24 6 7.3421 -5.2881 -1.7023 25 6 7.3437 -6.6293 -1.3696 26 6 6.4557 -7.1079 -0.4210 27 9 6.4598 -8.4180 -0.0912 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 0.9453 -4.9822 -0.8902 32 1 0.9446 -4.9827 0.8897 33 1 3.3223 -5.7955 -0.8407 34 1 2.1821 -6.9374 -0.0893 35 1 2.3636 -7.3142 2.3998 36 1 1.6156 -5.6984 2.3449 37 1 3.3294 -4.7743 3.7796 38 1 2.7484 -6.2674 4.5501 39 1 5.1264 -6.4670 4.5191 40 1 4.8636 -4.2277 0.3260 41 1 6.4500 -3.3770 -1.3531 42 1 8.0375 -4.9140 -2.4391 43 1 8.0398 -7.3034 -1.8467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590173262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:32 Heat of formation + Delta-G solvation = -106.044846 kcal Electronic energy + Delta-G solvation = -28092.115447 eV Core-core repulsion = 24051.255009 eV Total energy + Delta-G solvation = -4040.860437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.89404 -41.82104 -39.68033 -39.01813 -37.83210 -35.92797 -34.82774 -33.07827 -31.46060 -30.95876 -29.89207 -28.92644 -26.52098 -24.98886 -24.39443 -23.65383 -22.79558 -22.23352 -20.17406 -18.77813 -18.57002 -18.49946 -17.90345 -17.41340 -17.28373 -17.06501 -16.71780 -16.45819 -16.32384 -15.99632 -15.58081 -15.29929 -15.25192 -14.95005 -14.79438 -14.56379 -14.11833 -13.92042 -13.69759 -13.39647 -13.19327 -13.13057 -12.92578 -12.73169 -12.56571 -12.48025 -12.44285 -12.19956 -12.00997 -11.64164 -11.18342 -11.10773 -10.78719 -10.14457 -10.08524 -9.85748 -9.61548 -9.47756 -8.26047 -6.35964 0.15592 0.31267 1.41544 1.43690 1.44838 1.56817 2.19145 2.38662 2.52734 2.70064 3.08791 3.23777 3.33101 3.38374 3.58755 3.79786 3.87086 3.97746 4.11109 4.17695 4.24319 4.33461 4.40495 4.47557 4.50907 4.57615 4.63717 4.81939 4.87915 4.93813 4.97964 5.02306 5.14677 5.22264 5.29339 5.42705 5.54131 5.62383 5.67715 5.78425 5.94847 5.98644 6.05944 6.15371 6.64480 6.94548 7.08042 7.36108 8.85974 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.004044 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.550034 B = 6922.290042 C = 7913.591683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.212 3.788 10 O -0.389 6.389 11 C 0.061 3.939 12 C 0.065 3.935 13 N -0.525 5.525 14 C 0.026 3.974 15 C 0.114 3.886 16 N -0.705 5.705 17 C 0.529 3.471 18 O -0.582 6.582 19 C 0.119 3.881 20 H 0.086 0.914 21 C -0.125 4.125 22 C -0.066 4.066 23 C -0.142 4.142 24 C -0.079 4.079 25 C -0.164 4.164 26 C 0.098 3.902 27 F -0.146 7.146 28 H 0.268 0.732 29 H -0.019 1.019 30 H -0.014 1.014 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.409 0.591 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 -14.882 2.338 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.189 4.189 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.137 3.863 10 O -0.308 6.308 11 C -0.016 4.016 12 C -0.062 4.062 13 N -0.252 5.252 14 C -0.101 4.101 15 C -0.010 4.010 16 N -0.356 5.356 17 C 0.315 3.685 18 O -0.461 6.461 19 C 0.008 3.992 20 H 0.103 0.897 21 C -0.127 4.127 22 C -0.084 4.084 23 C -0.160 4.160 24 C -0.096 4.096 25 C -0.182 4.182 26 C 0.079 3.921 27 F -0.124 7.124 28 H 0.077 0.923 29 H -0.002 1.002 30 H 0.004 0.996 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.246 0.754 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.182 0.818 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.565 -14.497 2.277 16.992 hybrid contribution -0.513 -0.189 0.300 0.623 sum 8.053 -14.686 2.577 16.946 Atomic orbital electron populations 1.70060 1.07620 1.28329 1.51106 1.25824 0.95793 1.02985 0.94318 0.85318 0.78505 0.77768 0.78659 1.19566 1.20319 1.18973 1.21359 0.94017 0.90818 1.51237 0.92083 1.19739 0.88574 0.84813 0.93194 1.87893 1.34363 1.13502 1.95070 1.22547 0.94773 0.84307 0.99980 1.22161 0.95422 0.96904 0.91688 1.62364 1.07002 1.51424 1.04370 1.22719 0.97431 1.00745 0.89241 1.21714 0.80702 0.99856 0.98705 1.45497 1.17716 1.63228 1.09195 1.19964 0.85810 0.76326 0.86448 1.90737 1.19150 1.49224 1.87032 1.20327 0.90980 0.96635 0.91263 0.89682 1.19338 0.98967 0.94541 0.99818 1.21175 0.97334 0.93814 0.96069 1.21530 0.95984 1.01416 0.97105 1.21394 0.97840 0.91687 0.98717 1.21364 1.00161 0.97857 0.98864 1.17751 0.98613 0.77750 0.98031 1.91442 1.95804 1.33377 1.91802 0.92301 1.00156 0.99596 0.93431 0.93045 0.90518 0.90709 0.91891 0.87446 0.91159 0.86185 0.75443 0.84862 0.84295 0.81799 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.51 9.43 25.60 0.24 -30.27 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.21 11.17 5.69 71.24 0.41 11.57 16 10 O -0.39 -17.19 10.27 -148.98 -1.53 -18.72 16 11 C 0.06 1.98 6.02 71.98 0.43 2.41 16 12 C 0.07 1.72 4.91 86.30 0.42 2.15 16 13 N -0.53 -13.87 3.35 -879.20 -2.94 -16.82 16 14 C 0.03 0.52 5.45 86.24 0.47 0.99 16 15 C 0.11 2.04 7.39 86.47 0.64 2.68 16 16 N -0.70 -15.63 5.52 -466.10 -2.57 -18.20 16 17 C 0.53 15.52 7.37 87.68 0.65 16.16 16 18 O -0.58 -21.11 16.93 -3.05 -0.05 -21.16 16 19 C 0.12 3.31 1.89 43.23 0.08 3.39 16 20 H 0.09 2.23 7.76 -2.38 -0.02 2.21 16 21 C -0.12 -3.75 3.90 -19.82 -0.08 -3.83 16 22 C -0.07 -2.04 8.12 22.26 0.18 -1.86 16 23 C -0.14 -3.79 10.04 22.27 0.22 -3.57 16 24 C -0.08 -1.71 10.04 22.26 0.22 -1.49 16 25 C -0.16 -3.86 10.03 22.31 0.22 -3.63 16 26 C 0.10 2.84 6.86 22.37 0.15 3.00 16 27 F -0.15 -4.42 16.53 44.97 0.74 -3.68 16 28 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 29 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.53 6.14 -2.39 -0.01 1.52 16 33 H 0.08 2.24 6.32 -2.39 -0.02 2.22 16 34 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 35 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 36 H 0.11 2.15 5.96 -2.39 -0.01 2.14 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.41 7.72 8.84 -92.70 -0.82 6.90 16 40 H 0.13 4.82 7.22 -2.91 -0.02 4.80 16 41 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 42 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -72.02 358.82 0.91 -71.11 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.22 Total: 17.57 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 4.73 Total: -1.32 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -5.23 Total: -89.13 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.58 Total: -39.88 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.74 Total: -3.68 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -72.02 0.91 -71.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590173262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.935 kcal (2) G-P(sol) polarization free energy of solvation -72.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds