Wall clock time and date at job start Tue Mar 31 2020 13:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99823 * 2 1 4 4 H 1.48502 * 109.47482 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46768 * 120.00066 * 3 2 1 6 6 H 1.48497 * 109.47078 * 239.99893 * 3 2 1 7 7 C 1.37881 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99375 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00137 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46781 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99523 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47124 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46727 * 64.99666 * 12 11 10 14 14 C 1.47191 * 110.99991 * 66.30460 * 13 12 11 15 15 C 1.52991 * 108.72813 * 54.36840 * 14 13 12 16 16 N 1.46004 * 110.04379 * 50.28780 * 15 14 13 17 17 C 1.33710 * 122.92999 * 341.84431 * 16 15 14 18 18 O 1.21286 * 118.62726 * 181.68466 * 17 16 15 19 19 C 1.46906 * 110.99912 * 189.19333 * 13 12 11 20 20 H 1.08995 * 109.38756 * 166.77841 * 19 13 12 21 21 C 1.50706 * 109.38305 * 47.09121 * 19 13 12 22 22 C 1.38219 * 120.00853 * 258.00735 * 21 19 13 23 23 C 1.38218 * 120.02244 * 179.97438 * 22 21 19 24 24 C 1.38273 * 120.05370 * 0.02562 * 23 22 21 25 25 C 1.38175 * 120.02247 * 0.02562 * 24 23 22 26 26 C 1.38433 * 120.01104 * 77.73428 * 21 19 13 27 27 F 1.35095 * 120.03153 * 359.97438 * 26 21 19 28 28 H 0.96997 * 120.00387 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47031 * 300.00849 * 9 7 2 30 30 H 1.09003 * 109.46901 * 60.00434 * 9 7 2 31 31 H 1.09000 * 109.47166 * 299.99798 * 11 10 9 32 32 H 1.09001 * 109.47770 * 59.99774 * 11 10 9 33 33 H 1.08994 * 109.47243 * 185.00001 * 12 11 10 34 34 H 1.08994 * 109.46695 * 304.99967 * 12 11 10 35 35 H 1.08999 * 109.59364 * 174.13380 * 14 13 12 36 36 H 1.08993 * 109.59657 * 294.59173 * 14 13 12 37 37 H 1.08997 * 109.37267 * 170.46957 * 15 14 13 38 38 H 1.09006 * 109.37275 * 290.11347 * 15 14 13 39 39 H 0.96998 * 118.53233 * 161.81790 * 16 15 14 40 40 H 1.07994 * 119.99200 * 359.96219 * 22 21 19 41 41 H 1.08001 * 119.97937 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.98705 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.01305 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4081 -5.8883 1.2535 14 6 2.5620 -6.2486 2.4027 15 6 1.9348 -7.6191 2.1404 16 7 2.9658 -8.5735 1.7432 17 6 4.1702 -8.1995 1.2990 18 8 4.9572 -9.0581 0.9606 19 6 4.5896 -6.7599 1.2013 20 1 5.2536 -6.5194 2.0314 21 6 5.3177 -6.5381 -0.0994 22 6 5.1794 -7.4458 -1.1326 23 6 5.8466 -7.2423 -2.3258 24 6 6.6535 -6.1311 -2.4873 25 6 6.7941 -5.2230 -1.4555 26 6 6.1207 -5.4222 -0.2618 27 9 6.2519 -4.5313 0.7452 28 1 -0.4850 -0.8400 -0.0004 29 1 0.6246 -2.5570 0.8896 30 1 0.6241 -2.5567 -0.8904 31 1 0.9446 -4.9827 0.8886 32 1 0.9451 -4.9822 -0.8913 33 1 2.1820 -6.9374 -0.0917 34 1 3.3214 -5.7952 -0.8435 35 1 3.1710 -6.2921 3.3056 36 1 1.7755 -5.5040 2.5252 37 1 1.4452 -7.9724 3.0480 38 1 1.1961 -7.5322 1.3436 39 1 2.7684 -9.5212 1.8047 40 1 4.5500 -8.3144 -1.0075 41 1 5.7378 -7.9518 -3.1328 42 1 7.1747 -5.9734 -3.4199 43 1 7.4247 -4.3553 -1.5816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590173263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:35 Heat of formation + Delta-G solvation = -79.067934 kcal Electronic energy + Delta-G solvation = -28332.533820 eV Core-core repulsion = 24292.843189 eV Total energy + Delta-G solvation = -4039.690631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.65313 -41.38506 -38.70563 -37.95476 -36.49656 -34.75168 -33.00269 -31.95259 -30.55484 -29.74150 -29.05456 -26.51892 -25.34992 -24.05367 -23.08834 -22.46602 -21.88511 -21.41988 -18.94779 -17.84351 -17.47969 -17.11101 -16.94822 -16.40038 -16.25654 -15.95968 -15.36494 -15.25886 -15.13605 -14.73622 -14.31639 -14.10658 -14.00190 -13.70634 -13.48316 -13.25882 -12.98199 -12.75713 -12.60152 -12.29743 -12.13021 -11.82961 -11.65636 -11.51297 -11.31145 -11.16955 -10.95849 -10.67116 -10.49682 -10.16902 -10.05883 -9.42564 -8.98150 -8.81411 -8.64230 -8.60230 -8.30161 -8.19932 -6.43147 -4.10873 1.09586 1.22998 2.28149 2.84492 3.45915 3.47368 3.48623 3.67246 3.82861 4.12710 4.30013 4.39028 4.44776 4.57775 4.66434 4.73861 4.85269 4.90035 5.05328 5.12492 5.17132 5.27165 5.34583 5.37599 5.44458 5.54456 5.68535 5.74124 5.80399 5.92024 6.03260 6.07912 6.14206 6.23467 6.33725 6.39031 6.73888 6.76068 6.83968 6.89573 6.94666 7.14989 7.86589 7.94084 8.22233 8.69554 8.85134 9.59276 10.97086 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.004207 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.938075 B = 6653.326032 C = 7950.448456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 1.077 2.923 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.591 4.591 8 H 0.061 0.939 9 C 0.186 3.814 10 O -0.367 6.367 11 C 0.067 3.933 12 C 0.047 3.953 13 N -0.498 5.498 14 C 0.033 3.967 15 C 0.067 3.933 16 N -0.720 5.720 17 C 0.495 3.505 18 O -0.541 6.541 19 C 0.116 3.884 20 H 0.125 0.875 21 C -0.112 4.112 22 C -0.070 4.070 23 C -0.139 4.139 24 C -0.084 4.084 25 C -0.159 4.159 26 C 0.139 3.861 27 F -0.124 7.124 28 H 0.266 0.734 29 H -0.007 1.007 30 H -0.009 1.009 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -18.449 0.759 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.186 4.186 3 Si 0.905 3.095 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.629 4.629 8 H 0.079 0.921 9 C 0.111 3.889 10 O -0.286 6.286 11 C -0.011 4.011 12 C -0.080 4.080 13 N -0.220 5.220 14 C -0.095 4.095 15 C -0.058 4.058 16 N -0.373 5.373 17 C 0.280 3.720 18 O -0.418 6.418 19 C 0.005 3.995 20 H 0.142 0.858 21 C -0.114 4.114 22 C -0.088 4.088 23 C -0.157 4.157 24 C -0.102 4.102 25 C -0.178 4.178 26 C 0.119 3.881 27 F -0.102 7.102 28 H 0.076 0.924 29 H 0.010 0.990 30 H 0.009 0.991 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.235 0.765 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.992 -16.432 0.680 18.285 hybrid contribution -0.735 -2.832 0.204 2.933 sum 7.257 -19.264 0.884 20.604 Atomic orbital electron populations 1.70809 1.06841 1.30292 1.47045 1.25903 0.96391 1.02633 0.93674 0.83427 0.74734 0.74574 0.76815 1.20714 1.21179 1.21237 1.21895 0.95492 0.90341 1.55160 0.92100 1.20259 0.89447 0.85374 0.93774 1.88020 1.33822 1.11914 1.94875 1.22245 0.93623 0.86395 0.98878 1.22415 0.96604 0.96579 0.92447 1.62609 1.06465 1.49496 1.03476 1.22686 0.98426 0.93870 0.94529 1.22216 0.90993 0.91212 1.01413 1.45619 1.14248 1.10666 1.66750 1.21070 0.81649 0.92966 0.76357 1.90755 1.50510 1.52308 1.48206 1.20680 0.94244 0.86614 0.97968 0.85770 1.19131 1.00346 0.96218 0.95685 1.21037 0.98376 0.97543 0.91876 1.21104 0.98506 0.98463 0.97598 1.21024 0.97497 0.93456 0.98239 1.21159 1.02357 1.01729 0.92517 1.17366 0.97100 0.87538 0.86104 1.91555 1.94120 1.66090 1.58476 0.92440 0.98957 0.99090 0.94496 0.94176 0.93604 0.89236 0.89403 0.87333 0.89656 0.90863 0.76498 0.85323 0.85490 0.85068 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.02 13.65 55.43 0.76 -27.27 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.08 25.74 29.90 -169.99 -5.08 20.66 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.59 -17.70 9.43 -34.44 -0.32 -18.03 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.19 5.05 5.00 36.01 0.18 5.23 16 10 O -0.37 -8.83 10.27 -35.23 -0.36 -9.19 16 11 C 0.07 1.18 6.00 37.16 0.22 1.40 16 12 C 0.05 0.69 4.27 -3.82 -0.02 0.67 16 13 N -0.50 -7.12 4.86 -229.46 -1.11 -8.24 16 14 C 0.03 0.37 5.67 -3.67 -0.02 0.35 16 15 C 0.07 0.56 6.43 -4.31 -0.03 0.53 16 16 N -0.72 -6.87 5.35 -61.06 -0.33 -7.20 16 17 C 0.49 6.26 5.83 -11.67 -0.07 6.19 16 18 O -0.54 -8.25 15.47 5.55 0.09 -8.17 16 19 C 0.12 1.58 2.36 -70.22 -0.17 1.42 16 20 H 0.12 1.68 8.00 -51.93 -0.42 1.26 16 21 C -0.11 -1.61 3.42 -104.55 -0.36 -1.97 16 22 C -0.07 -0.91 7.54 -39.60 -0.30 -1.21 16 23 C -0.14 -1.57 10.04 -39.58 -0.40 -1.97 16 24 C -0.08 -0.93 10.04 -39.59 -0.40 -1.33 16 25 C -0.16 -2.07 10.03 -39.51 -0.40 -2.46 16 26 C 0.14 2.12 7.25 -39.42 -0.29 1.83 16 27 F -0.12 -2.12 16.70 2.25 0.04 -2.08 16 28 H 0.27 8.07 7.22 -40.82 -0.29 7.78 16 29 H -0.01 -0.20 8.01 -51.93 -0.42 -0.61 16 30 H -0.01 -0.24 8.01 -51.93 -0.42 -0.65 16 31 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.57 5.67 -51.93 -0.29 0.27 16 34 H 0.09 1.47 5.86 -51.93 -0.30 1.16 16 35 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.11 1.27 6.65 -51.93 -0.35 0.93 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.60 6.74 -51.93 -0.35 0.25 16 39 H 0.40 3.19 8.84 -40.82 -0.36 2.83 16 40 H 0.13 1.68 6.01 -52.49 -0.32 1.36 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -35.34 350.12 -8.77 -44.11 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.59 Total: 1.08 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -2.45 Total: -8.96 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.69 Total: -42.71 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.28 Total: -17.36 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.34 -8.77 -44.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590173263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.962 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds