Wall clock time and date at job start Tue Mar 31 2020 13:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99823 * 2 1 4 4 H 1.48502 * 109.47482 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46768 * 120.00066 * 3 2 1 6 6 H 1.48497 * 109.47078 * 239.99893 * 3 2 1 7 7 C 1.37881 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99375 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00137 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46781 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99523 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47124 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46727 * 64.99666 * 12 11 10 14 14 C 1.47191 * 110.99991 * 66.30460 * 13 12 11 15 15 C 1.52991 * 108.72813 * 54.36840 * 14 13 12 16 16 N 1.46004 * 110.04379 * 50.28780 * 15 14 13 17 17 C 1.33710 * 122.92999 * 341.84431 * 16 15 14 18 18 O 1.21286 * 118.62726 * 181.68466 * 17 16 15 19 19 C 1.46906 * 110.99912 * 189.19333 * 13 12 11 20 20 H 1.08995 * 109.38756 * 166.77841 * 19 13 12 21 21 C 1.50706 * 109.38305 * 47.09121 * 19 13 12 22 22 C 1.38219 * 120.00853 * 258.00735 * 21 19 13 23 23 C 1.38218 * 120.02244 * 179.97438 * 22 21 19 24 24 C 1.38273 * 120.05370 * 0.02562 * 23 22 21 25 25 C 1.38175 * 120.02247 * 0.02562 * 24 23 22 26 26 C 1.38433 * 120.01104 * 77.73428 * 21 19 13 27 27 F 1.35095 * 120.03153 * 359.97438 * 26 21 19 28 28 H 0.96997 * 120.00387 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47031 * 300.00849 * 9 7 2 30 30 H 1.09003 * 109.46901 * 60.00434 * 9 7 2 31 31 H 1.09000 * 109.47166 * 299.99798 * 11 10 9 32 32 H 1.09001 * 109.47770 * 59.99774 * 11 10 9 33 33 H 1.08994 * 109.47243 * 185.00001 * 12 11 10 34 34 H 1.08994 * 109.46695 * 304.99967 * 12 11 10 35 35 H 1.08999 * 109.59364 * 174.13380 * 14 13 12 36 36 H 1.08993 * 109.59657 * 294.59173 * 14 13 12 37 37 H 1.08997 * 109.37267 * 170.46957 * 15 14 13 38 38 H 1.09006 * 109.37275 * 290.11347 * 15 14 13 39 39 H 0.96998 * 118.53233 * 161.81790 * 16 15 14 40 40 H 1.07994 * 119.99200 * 359.96219 * 22 21 19 41 41 H 1.08001 * 119.97937 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.98705 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.01305 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4081 -5.8883 1.2535 14 6 2.5620 -6.2486 2.4027 15 6 1.9348 -7.6191 2.1404 16 7 2.9658 -8.5735 1.7432 17 6 4.1702 -8.1995 1.2990 18 8 4.9572 -9.0581 0.9606 19 6 4.5896 -6.7599 1.2013 20 1 5.2536 -6.5194 2.0314 21 6 5.3177 -6.5381 -0.0994 22 6 5.1794 -7.4458 -1.1326 23 6 5.8466 -7.2423 -2.3258 24 6 6.6535 -6.1311 -2.4873 25 6 6.7941 -5.2230 -1.4555 26 6 6.1207 -5.4222 -0.2618 27 9 6.2519 -4.5313 0.7452 28 1 -0.4850 -0.8400 -0.0004 29 1 0.6246 -2.5570 0.8896 30 1 0.6241 -2.5567 -0.8904 31 1 0.9446 -4.9827 0.8886 32 1 0.9451 -4.9822 -0.8913 33 1 2.1820 -6.9374 -0.0917 34 1 3.3214 -5.7952 -0.8435 35 1 3.1710 -6.2921 3.3056 36 1 1.7755 -5.5040 2.5252 37 1 1.4452 -7.9724 3.0480 38 1 1.1961 -7.5322 1.3436 39 1 2.7684 -9.5212 1.8047 40 1 4.5500 -8.3144 -1.0075 41 1 5.7378 -7.9518 -3.1328 42 1 7.1747 -5.9734 -3.4199 43 1 7.4247 -4.3553 -1.5816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590173263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:35 Heat of formation + Delta-G solvation = -105.425993 kcal Electronic energy + Delta-G solvation = -28333.676791 eV Core-core repulsion = 24292.843189 eV Total energy + Delta-G solvation = -4040.833602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.85041 -42.37552 -39.65866 -39.21772 -38.09594 -35.72893 -35.15035 -33.04959 -31.55563 -31.02033 -29.98785 -28.55874 -26.45737 -25.11765 -24.67852 -24.10006 -22.84961 -22.56589 -19.96014 -19.15348 -18.86159 -18.45697 -18.11167 -17.63585 -17.33439 -17.25572 -16.57769 -16.47246 -16.27926 -15.91110 -15.69381 -15.57885 -15.37122 -15.10654 -14.74172 -14.32644 -14.18665 -14.03850 -13.83742 -13.72136 -13.40906 -13.21362 -12.96412 -12.77569 -12.56599 -12.46144 -12.36470 -12.12940 -11.91283 -11.79278 -11.52386 -10.82388 -10.80553 -10.28973 -10.25252 -9.94784 -9.66835 -9.31763 -8.80082 -6.49937 0.11694 0.22769 1.29710 1.53314 1.61785 1.83122 1.97708 2.49429 2.50708 2.80454 3.06117 3.06193 3.19823 3.32959 3.37610 3.72872 3.84173 3.91520 4.03127 4.04834 4.09081 4.20351 4.29538 4.36187 4.40121 4.42874 4.47954 4.55279 4.67909 4.81172 4.84244 4.89028 4.96148 5.05428 5.15503 5.29039 5.40725 5.53021 5.71640 5.79641 5.82137 5.91356 5.98226 6.03389 6.38345 6.75327 6.96474 7.29683 8.61331 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.004207 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.938075 B = 6653.326032 C = 7950.448456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.026 4.026 3 Si 1.123 2.877 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.619 4.619 8 H 0.047 0.953 9 C 0.199 3.801 10 O -0.388 6.388 11 C 0.058 3.942 12 C 0.061 3.939 13 N -0.523 5.523 14 C 0.027 3.973 15 C 0.073 3.927 16 N -0.705 5.705 17 C 0.500 3.500 18 O -0.571 6.571 19 C 0.118 3.882 20 H 0.116 0.884 21 C -0.123 4.123 22 C -0.080 4.080 23 C -0.133 4.133 24 C -0.080 4.080 25 C -0.168 4.168 26 C 0.100 3.900 27 F -0.146 7.146 28 H 0.256 0.744 29 H -0.016 1.016 30 H -0.021 1.021 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.411 0.589 40 H 0.129 0.871 41 H 0.158 0.842 42 H 0.167 0.833 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 -19.467 0.216 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.223 4.223 3 Si 0.943 3.057 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.656 4.656 8 H 0.065 0.935 9 C 0.124 3.876 10 O -0.307 6.307 11 C -0.019 4.019 12 C -0.066 4.066 13 N -0.247 5.247 14 C -0.100 4.100 15 C -0.052 4.052 16 N -0.358 5.358 17 C 0.284 3.716 18 O -0.450 6.450 19 C 0.007 3.993 20 H 0.133 0.867 21 C -0.125 4.125 22 C -0.098 4.098 23 C -0.151 4.151 24 C -0.098 4.098 25 C -0.186 4.186 26 C 0.081 3.919 27 F -0.124 7.124 28 H 0.065 0.935 29 H 0.001 0.999 30 H -0.003 1.003 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.249 0.751 40 H 0.147 0.853 41 H 0.176 0.824 42 H 0.184 0.816 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.928 -17.500 0.154 19.212 hybrid contribution -0.751 -2.612 0.370 2.743 sum 7.176 -20.111 0.525 21.360 Atomic orbital electron populations 1.70928 1.07609 1.29805 1.48184 1.27466 0.96465 1.06284 0.92119 0.82874 0.74117 0.70587 0.78155 1.19928 1.19498 1.19408 1.22232 0.95121 0.92284 1.55997 0.93485 1.19897 0.89198 0.85941 0.92607 1.87974 1.34093 1.13644 1.94997 1.22593 0.95026 0.84194 1.00062 1.22216 0.95476 0.96524 0.92377 1.62509 1.07284 1.50882 1.04040 1.22762 0.98089 0.95421 0.93732 1.22277 0.90211 0.89319 1.03369 1.45513 1.13361 1.11633 1.65281 1.20805 0.82321 0.92045 0.76393 1.90740 1.51670 1.52679 1.49875 1.20572 0.93817 0.87307 0.97584 0.86664 1.19291 1.00482 0.96297 0.96431 1.21155 0.98992 0.97322 0.92353 1.21525 0.97166 0.98800 0.97615 1.21434 0.96990 0.92507 0.98823 1.21459 1.02197 1.02678 0.92297 1.17797 0.99175 0.88217 0.86744 1.91486 1.94506 1.66917 1.59513 0.93475 0.99867 1.00292 0.92732 0.93392 0.90746 0.91066 0.88654 0.88128 0.86087 0.90026 0.75094 0.85277 0.82438 0.81595 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.65 21.45 0.29 -57.00 16 2 C -0.03 -1.52 5.46 84.66 0.46 -1.06 16 3 Si 1.12 51.21 29.90 68.60 2.05 53.26 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.62 -37.75 9.43 25.60 0.24 -37.51 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.20 11.05 5.00 71.24 0.36 11.41 16 10 O -0.39 -19.01 10.27 -148.98 -1.53 -20.54 16 11 C 0.06 2.04 6.00 71.98 0.43 2.48 16 12 C 0.06 1.77 4.27 86.31 0.37 2.14 16 13 N -0.52 -14.94 4.86 -879.86 -4.28 -19.21 16 14 C 0.03 0.58 5.67 86.24 0.49 1.06 16 15 C 0.07 1.00 6.43 86.47 0.56 1.56 16 16 N -0.71 -11.85 5.35 -466.08 -2.49 -14.34 16 17 C 0.50 12.17 5.83 87.68 0.51 12.69 16 18 O -0.57 -17.03 15.47 -3.05 -0.05 -17.08 16 19 C 0.12 3.26 2.36 43.28 0.10 3.36 16 20 H 0.12 3.28 8.00 -2.39 -0.02 3.26 16 21 C -0.12 -3.60 3.42 -19.82 -0.07 -3.67 16 22 C -0.08 -2.03 7.54 22.26 0.17 -1.86 16 23 C -0.13 -2.77 10.04 22.27 0.22 -2.55 16 24 C -0.08 -1.62 10.04 22.26 0.22 -1.40 16 25 C -0.17 -4.35 10.03 22.31 0.22 -4.13 16 26 C 0.10 3.17 7.25 22.38 0.16 3.34 16 27 F -0.15 -5.29 16.70 44.97 0.75 -4.54 16 28 H 0.26 15.85 7.22 -92.71 -0.67 15.18 16 29 H -0.02 -0.92 8.01 -2.39 -0.02 -0.93 16 30 H -0.02 -1.16 8.01 -2.39 -0.02 -1.18 16 31 H 0.05 1.71 6.46 -2.39 -0.02 1.70 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.70 5.67 -2.39 -0.01 1.68 16 34 H 0.07 2.34 5.86 -2.39 -0.01 2.33 16 35 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 36 H 0.10 2.27 6.65 -2.39 -0.02 2.26 16 37 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.06 6.74 -2.38 -0.02 1.04 16 39 H 0.41 5.42 8.84 -92.71 -0.82 4.60 16 40 H 0.13 3.24 6.01 -2.91 -0.02 3.22 16 41 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -78.10 350.12 -0.47 -78.57 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.33 Total: 15.03 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.45 Total: -14.15 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -6.48 Total: -90.55 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.58 Total: -37.62 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.75 Total: -4.54 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -78.10 -0.47 -78.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590173263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.851 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds