Wall clock time and date at job start Tue Mar 31 2020 13:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42905 * 110.88570 * 300.42108 * 9 7 2 11 11 C 1.55147 * 111.00308 * 176.53980 * 9 7 2 12 12 C 1.54370 * 102.92092 * 206.45025 * 11 9 7 13 13 N 1.47021 * 107.28813 * 22.14333 * 12 11 9 14 14 C 1.34772 * 125.64937 * 181.13182 * 13 12 11 15 15 O 1.21590 * 120.00206 * 179.97438 * 14 13 12 16 16 N 1.34782 * 119.99817 * 359.94913 * 14 13 12 17 17 C 1.46507 * 119.99662 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.46925 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47104 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.97394 * 269.72305 * 19 18 17 21 21 C 1.38204 * 120.02301 * 179.72653 * 20 19 18 22 22 C 1.38459 * 119.97388 * 0.52600 * 21 20 19 23 23 F 1.35102 * 120.02245 * 179.72937 * 22 21 20 24 24 C 1.38453 * 119.94627 * 359.74896 * 22 21 20 25 25 C 1.38195 * 119.98020 * 0.02562 * 24 22 21 26 26 C 1.47423 * 108.70225 * 1.08928 * 13 12 11 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 0.96701 * 113.99475 * 59.29573 * 10 9 7 29 29 H 1.09001 * 110.72394 * 324.78810 * 11 9 7 30 30 H 1.09008 * 110.72197 * 88.06231 * 11 9 7 31 31 H 1.09001 * 109.84942 * 262.73128 * 12 11 9 32 32 H 1.09002 * 109.89987 * 141.57945 * 12 11 9 33 33 H 0.96995 * 120.00114 * 0.02562 * 16 14 13 34 34 H 1.08997 * 109.46905 * 299.99870 * 17 16 14 35 35 H 1.08997 * 109.46952 * 59.99989 * 17 16 14 36 36 H 1.09006 * 109.46912 * 299.99777 * 18 17 16 37 37 H 1.09007 * 109.47472 * 59.99485 * 18 17 16 38 38 H 1.07997 * 119.99099 * 359.97438 * 20 19 18 39 39 H 1.08005 * 120.01127 * 180.30026 * 21 20 19 40 40 H 1.08005 * 120.00861 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.99040 * 179.97438 * 25 24 22 42 42 H 1.08996 * 110.36708 * 217.03620 * 26 13 12 43 43 H 1.09002 * 110.46021 * 94.75715 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4058 -2.6047 1.1422 11 6 2.2252 -3.7035 -0.0910 12 6 1.3635 -4.7981 -0.7562 13 7 0.2757 -4.1201 -1.4763 14 6 -0.7059 -4.7292 -2.1706 15 8 -1.5577 -4.0651 -2.7290 16 7 -0.7430 -6.0743 -2.2463 17 6 -1.8097 -6.7364 -3.0014 18 6 -1.6209 -8.2528 -2.9280 19 6 -2.7184 -8.9339 -3.7043 20 6 -3.8952 -9.2875 -3.0709 21 6 -4.9047 -9.9070 -3.7831 22 6 -4.7327 -10.1832 -5.1290 23 9 -5.7168 -10.7937 -5.8248 24 6 -3.5514 -9.8336 -5.7608 25 6 -2.5452 -9.2101 -5.0478 26 6 0.4358 -2.6638 -1.3124 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2528 -1.9000 1.2116 29 1 3.0862 -3.4596 -0.7134 30 1 2.5431 -4.0141 0.9044 31 1 0.9489 -5.4572 0.0065 32 1 1.9696 -5.3730 -1.4564 33 1 -0.0635 -6.6041 -1.8008 34 1 -2.7764 -6.4699 -2.5743 35 1 -1.7713 -6.4150 -4.0422 36 1 -0.6540 -8.5196 -3.3549 37 1 -1.6594 -8.5739 -1.8871 38 1 -4.0274 -9.0760 -2.0201 39 1 -5.8259 -10.1788 -3.2892 40 1 -3.4161 -10.0490 -6.8105 41 1 -1.6235 -8.9377 -5.5404 42 1 -0.5379 -2.1837 -1.2152 43 1 0.9829 -2.2433 -2.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591893443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:17 Heat of formation + Delta-G solvation = -124.106224 kcal Electronic energy + Delta-G solvation = -26261.857304 eV Core-core repulsion = 22220.213666 eV Total energy + Delta-G solvation = -4041.643637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.90157 -41.23567 -40.17192 -39.08863 -36.38299 -36.02258 -34.17564 -33.43717 -32.07603 -31.67666 -29.65420 -28.94063 -26.85675 -24.73813 -24.00877 -23.75376 -22.14816 -21.43044 -20.92125 -19.25705 -18.80948 -18.60337 -17.46535 -17.36402 -16.93152 -16.87769 -16.59328 -16.36006 -16.10515 -15.64374 -15.54764 -14.98662 -14.80082 -14.65240 -14.57219 -14.42364 -14.05707 -13.80346 -13.59138 -13.48294 -13.27476 -12.80380 -12.61403 -12.58188 -12.47926 -12.36376 -12.30727 -12.22369 -12.06055 -11.84553 -11.32342 -11.17623 -10.63297 -10.32193 -10.17742 -10.04455 -9.54646 -9.28901 -8.23312 -6.40348 0.12066 0.29077 1.44613 1.45206 1.53427 1.71760 2.18456 2.39593 2.59924 3.02839 3.12871 3.30988 3.76916 3.82670 3.87451 3.99750 4.06275 4.13452 4.15720 4.23622 4.36023 4.38861 4.45841 4.60755 4.67165 4.79081 4.89844 4.99662 5.04167 5.09358 5.12530 5.14052 5.17911 5.27401 5.33679 5.42026 5.48477 5.53386 5.58464 5.78406 5.93609 6.06546 6.22958 6.67027 7.11022 7.31024 7.38098 7.61047 8.81800 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032382 B = 0.002086 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.463908 B =13419.353512 C =13688.630659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.589 6.589 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.708 3.292 15 O -0.648 6.648 16 N -0.728 5.728 17 C 0.145 3.855 18 C -0.076 4.076 19 C -0.094 4.094 20 C -0.089 4.089 21 C -0.159 4.159 22 C 0.071 3.929 23 F -0.152 7.152 24 C -0.158 4.158 25 C -0.087 4.087 26 C 0.126 3.874 27 H 0.269 0.731 28 H 0.374 0.626 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.412 0.588 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.038 0.962 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -21.938 -6.425 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.397 6.397 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.370 5.370 14 C 0.410 3.590 15 O -0.531 6.531 16 N -0.385 5.385 17 C 0.021 3.979 18 C -0.113 4.113 19 C -0.095 4.095 20 C -0.107 4.107 21 C -0.178 4.178 22 C 0.052 3.948 23 F -0.131 7.131 24 C -0.177 4.177 25 C -0.105 4.105 26 C 0.002 3.998 27 H 0.078 0.922 28 H 0.223 0.777 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.248 0.752 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.057 0.943 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.154 -21.970 -6.793 23.097 hybrid contribution -0.450 1.538 -0.212 1.616 sum -2.604 -20.432 -7.005 21.756 Atomic orbital electron populations 1.69782 1.07231 1.28456 1.50185 1.25856 0.95741 1.02931 0.93153 0.85509 0.78268 0.78292 0.78966 1.19472 1.21310 1.19345 1.21805 0.94027 0.91233 1.52334 0.91121 1.19875 0.86753 0.93318 0.80990 1.86066 1.51453 1.54444 1.47709 1.22611 0.97288 0.93591 1.01402 1.22143 0.88002 0.95544 0.95783 1.47851 1.27747 1.08337 1.53054 1.15785 0.80951 0.82879 0.79419 1.90854 1.42504 1.65792 1.53949 1.44891 1.32750 1.03150 1.57745 1.21176 0.89305 0.92054 0.95371 1.20699 0.98055 0.90590 1.01989 1.19893 0.95859 0.99296 0.94479 1.21228 0.91931 0.96282 1.01216 1.21368 1.01764 1.02078 0.92574 1.18055 0.86885 0.98787 0.91080 1.91470 1.61184 1.81028 1.79411 1.21374 0.92687 1.01671 1.01964 1.21233 0.99415 0.96375 0.93435 1.22658 0.99774 0.77899 0.99426 0.92167 0.77651 0.89251 0.89597 0.90677 0.88852 0.75151 0.93334 0.92816 0.87856 0.88250 0.83260 0.83571 0.83423 0.82951 0.94301 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 10.69 21.45 0.23 -50.15 16 2 C 0.02 1.25 5.29 84.66 0.45 1.70 16 3 Si 0.96 41.62 29.54 68.60 2.03 43.65 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.56 -28.59 8.26 25.60 0.21 -28.38 16 8 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 9 C 0.23 11.04 0.88 -10.15 -0.01 11.03 16 10 O -0.59 -30.15 13.17 -148.98 -1.96 -32.11 16 11 C -0.11 -4.01 6.13 31.80 0.19 -3.82 16 12 C 0.11 3.25 6.15 86.75 0.53 3.78 16 13 N -0.63 -25.37 3.33 -829.66 -2.76 -28.13 16 14 C 0.71 28.08 8.49 179.05 1.52 29.60 16 15 O -0.65 -32.34 16.60 -4.00 -0.07 -32.41 16 16 N -0.73 -19.09 5.52 -478.53 -2.64 -21.73 16 17 C 0.14 3.21 5.66 86.38 0.49 3.69 16 18 C -0.08 -0.94 5.46 29.85 0.16 -0.78 16 19 C -0.09 -1.34 5.13 -19.86 -0.10 -1.44 16 20 C -0.09 -1.27 9.70 22.26 0.22 -1.06 16 21 C -0.16 -2.52 10.03 22.31 0.22 -2.30 16 22 C 0.07 1.28 7.30 22.37 0.16 1.44 16 23 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 24 C -0.16 -2.43 10.03 22.31 0.22 -2.21 16 25 C -0.09 -1.19 9.70 22.26 0.22 -0.97 16 26 C 0.13 6.22 5.50 86.86 0.48 6.70 16 27 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 28 H 0.37 20.38 7.26 -74.06 -0.54 19.84 16 29 H 0.09 2.99 8.03 -2.39 -0.02 2.97 16 30 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.41 7.78 7.46 -92.71 -0.69 7.09 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 0.90 8.09 -2.38 -0.02 0.88 16 37 H 0.10 0.96 8.08 -2.38 -0.02 0.94 16 38 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.04 2.23 7.47 -2.39 -0.02 2.21 16 43 H 0.04 2.03 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -70.46 364.56 0.39 -70.07 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.19 Total: 36.13 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 4.97 Total: 16.99 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.17 Total: -100.00 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: -2.03 Total: -64.52 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -70.46 0.39 -70.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591893443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.032 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds