Wall clock time and date at job start Tue Mar 31 2020 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48499 * 109.47133 * 239.99992 * 3 2 1 5 5 H 1.48500 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46952 * 120.00067 * 3 2 1 7 7 C 1.37877 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00469 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.88294 * 62.42742 * 9 7 2 11 11 C 1.55160 * 111.04163 * 186.32907 * 9 7 2 12 12 C 1.54334 * 103.02221 * 153.39593 * 11 9 7 13 13 N 1.47027 * 107.26422 * 338.14297 * 12 11 9 14 14 C 1.34771 * 125.64478 * 178.84831 * 13 12 11 15 15 O 1.21593 * 120.00171 * 179.69468 * 14 13 12 16 16 N 1.34773 * 120.00417 * 359.68987 * 14 13 12 17 17 C 1.46496 * 120.00329 * 179.97438 * 16 14 13 18 18 C 1.53009 * 109.47457 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.47237 * 180.02562 * 18 17 16 20 20 C 1.38244 * 119.97167 * 89.99910 * 19 18 17 21 21 C 1.38205 * 120.02298 * 180.02562 * 20 19 18 22 22 C 1.38459 * 119.97412 * 0.24026 * 21 20 19 23 23 F 1.35099 * 120.02759 * 179.72396 * 22 21 20 24 24 C 1.38466 * 119.94836 * 359.48301 * 22 21 20 25 25 C 1.38196 * 119.97140 * 0.53984 * 24 22 21 26 26 C 1.47419 * 108.70214 * 358.58553 * 13 12 11 27 27 H 0.97003 * 120.00374 * 359.97438 * 1 2 3 28 28 H 0.96702 * 114.00011 * 297.56689 * 10 9 7 29 29 H 1.08994 * 110.71984 * 271.95552 * 11 9 7 30 30 H 1.08999 * 110.71364 * 35.22699 * 11 9 7 31 31 H 1.08991 * 109.99045 * 218.66856 * 12 11 9 32 32 H 1.09001 * 109.77490 * 97.49594 * 12 11 9 33 33 H 0.97004 * 120.00235 * 0.02562 * 16 14 13 34 34 H 1.09008 * 109.47032 * 60.00398 * 17 16 14 35 35 H 1.09005 * 109.47400 * 300.00454 * 17 16 14 36 36 H 1.08994 * 109.46760 * 60.00165 * 18 17 16 37 37 H 1.09001 * 109.46480 * 300.00262 * 18 17 16 38 38 H 1.07999 * 119.98898 * 0.02589 * 20 19 18 39 39 H 1.08002 * 120.00949 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00962 * 180.25357 * 24 22 21 41 41 H 1.08000 * 119.98525 * 179.74601 * 25 24 22 42 42 H 1.09000 * 110.36410 * 143.19554 * 26 13 12 43 43 H 1.08995 * 110.37089 * 265.40414 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4606 -2.6310 -1.1838 11 6 2.2190 -3.7013 0.1585 12 6 1.3290 -4.7806 0.8104 13 7 0.2063 -4.0871 1.4587 14 6 -0.8065 -4.6806 2.1208 15 8 -1.6824 -4.0044 2.6247 16 7 -0.8485 -6.0237 2.2243 17 6 -1.9491 -6.6688 2.9445 18 6 -1.7582 -8.1866 2.9143 19 6 -2.8907 -8.8502 3.6546 20 6 -4.0398 -9.2134 2.9771 21 6 -5.0793 -9.8215 3.6550 22 6 -4.9715 -10.0625 5.0142 23 9 -5.9893 -10.6519 5.6791 24 6 -3.8179 -9.7036 5.6906 25 6 -2.7799 -9.0952 5.0106 26 6 0.3754 -2.6348 1.2701 27 1 -0.4851 0.8400 0.0004 28 1 -0.2255 -1.9558 -1.2758 29 1 2.5835 -4.0341 -0.8133 30 1 3.0497 -3.4431 0.8153 31 1 1.9008 -5.3358 1.5538 32 1 0.9531 -5.4600 0.0454 33 1 -0.1496 -6.5633 1.8226 34 1 -2.8952 -6.4118 2.4679 35 1 -1.9579 -6.3246 3.9787 36 1 -0.8123 -8.4433 3.3910 37 1 -1.7492 -8.5311 1.8802 38 1 -4.1251 -9.0217 1.9176 39 1 -5.9770 -10.1047 3.1256 40 1 -3.7311 -9.8948 6.7499 41 1 -1.8816 -8.8114 5.5388 42 1 -0.5923 -2.1571 1.1168 43 1 0.8817 -2.1969 2.1302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591893447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:23 Heat of formation + Delta-G solvation = -103.036712 kcal Electronic energy + Delta-G solvation = -26268.774496 eV Core-core repulsion = 22228.044501 eV Total energy + Delta-G solvation = -4040.729995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.17862 -39.82575 -39.37674 -37.43877 -35.21681 -34.21540 -32.43621 -32.21998 -31.47819 -30.11364 -28.30591 -27.58679 -25.11671 -23.59385 -23.40404 -22.37552 -21.41885 -19.66720 -19.48175 -17.97927 -17.56182 -17.01577 -16.76428 -16.13902 -15.86144 -15.52761 -15.43297 -14.96925 -14.57295 -14.43644 -14.32056 -14.08276 -13.87411 -13.58348 -13.04777 -12.99502 -12.90792 -12.76374 -12.15433 -11.89739 -11.80415 -11.68391 -11.63043 -11.39743 -11.19670 -11.01118 -10.82151 -10.60751 -10.48686 -10.19212 -9.62780 -9.45390 -9.35715 -8.88226 -8.84339 -8.68272 -8.35283 -7.68365 -6.26286 -4.36314 0.77724 0.89122 3.05644 3.22802 3.28305 3.29050 3.31102 3.75531 3.94508 4.25668 4.34786 4.35084 4.54715 4.66355 4.78438 4.87290 4.93723 5.00652 5.14549 5.32653 5.40599 5.54469 5.63884 5.70079 5.74522 5.76395 5.79353 5.87372 5.91593 6.01124 6.12702 6.20939 6.51091 6.54533 6.70452 6.74406 6.89194 6.97077 7.24277 7.33406 7.64707 7.75425 8.04454 8.53812 8.67766 9.13784 9.30944 9.39161 10.80677 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032141 B = 0.002092 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.963107 B =13379.449361 C =13659.242664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.754 5.754 17 C 0.146 3.854 18 C -0.092 4.092 19 C -0.087 4.087 20 C -0.083 4.083 21 C -0.152 4.152 22 C 0.092 3.908 23 F -0.142 7.142 24 C -0.152 4.152 25 C -0.084 4.084 26 C 0.113 3.887 27 H 0.271 0.729 28 H 0.381 0.619 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.393 0.607 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 -19.962 6.753 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.417 3.583 15 O -0.475 6.475 16 N -0.411 5.411 17 C 0.021 3.979 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.102 4.102 21 C -0.171 4.171 22 C 0.073 3.927 23 F -0.121 7.121 24 C -0.171 4.171 25 C -0.102 4.102 26 C -0.008 4.008 27 H 0.081 0.919 28 H 0.231 0.769 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.226 0.774 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.103 0.897 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.455 -19.883 7.104 21.578 hybrid contribution 0.149 0.969 0.138 0.990 sum -4.306 -18.913 7.242 20.705 Atomic orbital electron populations 1.69710 1.05970 1.28016 1.49296 1.25084 0.95042 0.99745 0.93372 0.86464 0.79520 0.82148 0.78771 1.20021 1.21100 1.20038 1.21409 0.93575 0.90062 1.52658 0.91603 1.19627 0.86642 0.91530 0.81423 1.86099 1.51517 1.57175 1.44365 1.22590 0.97555 0.95209 1.00044 1.21925 0.88321 0.96079 0.95490 1.47940 1.23256 1.09783 1.55545 1.15510 0.81894 0.81325 0.79529 1.90894 1.39669 1.63267 1.53687 1.45101 1.29029 1.05519 1.61442 1.21046 0.90031 0.89643 0.97152 1.20798 0.96745 0.94369 1.01019 1.19770 0.95780 0.99245 0.94007 1.20988 0.92055 0.96629 1.00482 1.21161 1.00899 1.02257 0.92733 1.17760 0.85876 0.98295 0.90752 1.91499 1.58158 1.81637 1.80784 1.21153 0.93028 1.01877 1.01034 1.20970 0.98584 0.97024 0.93622 1.23131 1.02558 0.75655 0.99502 0.91934 0.76911 0.90784 0.90448 0.93156 0.92690 0.77359 0.91665 0.91730 0.90007 0.89950 0.84726 0.84680 0.84709 0.84785 0.89662 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 10.69 55.43 0.59 -23.20 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.87 8.27 -34.44 -0.28 -14.16 16 8 H 0.07 1.65 7.79 -52.48 -0.41 1.24 16 9 C 0.25 5.93 0.87 -89.63 -0.08 5.85 16 10 O -0.58 -14.70 13.16 -35.23 -0.46 -15.16 16 11 C -0.12 -2.23 6.13 -24.89 -0.15 -2.39 16 12 C 0.11 1.77 6.15 -3.06 -0.02 1.75 16 13 N -0.63 -12.86 3.33 -176.24 -0.59 -13.45 16 14 C 0.72 14.40 8.49 -86.93 -0.74 13.66 16 15 O -0.60 -14.51 16.60 5.28 0.09 -14.42 16 16 N -0.75 -10.77 5.52 -65.22 -0.36 -11.13 16 17 C 0.15 1.74 5.66 -4.04 -0.02 1.72 16 18 C -0.09 -0.72 5.46 -27.88 -0.15 -0.87 16 19 C -0.09 -0.72 5.13 -104.62 -0.54 -1.26 16 20 C -0.08 -0.67 9.70 -39.59 -0.38 -1.06 16 21 C -0.15 -1.27 10.03 -39.51 -0.40 -1.67 16 22 C 0.09 0.86 7.30 -39.42 -0.29 0.57 16 23 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 24 C -0.15 -1.26 10.03 -39.51 -0.40 -1.66 16 25 C -0.08 -0.66 9.70 -39.59 -0.38 -1.05 16 26 C 0.11 2.73 5.38 -2.53 -0.01 2.72 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.38 9.91 7.56 45.56 0.34 10.26 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.39 4.52 7.46 -40.82 -0.30 4.21 16 34 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.09 2.33 7.33 -51.93 -0.38 1.95 16 43 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -31.15 364.62 -9.52 -40.67 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -5.36 Total: 13.43 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.94 Total: 3.93 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.35 Total: -47.78 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.38 Total: -29.59 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.15 -9.52 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591893447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.362 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds