Wall clock time and date at job start Tue Mar 31 2020 13:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48499 * 109.47133 * 239.99992 * 3 2 1 5 5 H 1.48500 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46952 * 120.00067 * 3 2 1 7 7 C 1.37877 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00469 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.88294 * 62.42742 * 9 7 2 11 11 C 1.55160 * 111.04163 * 186.32907 * 9 7 2 12 12 C 1.54334 * 103.02221 * 153.39593 * 11 9 7 13 13 N 1.47027 * 107.26422 * 338.14297 * 12 11 9 14 14 C 1.34771 * 125.64478 * 178.84831 * 13 12 11 15 15 O 1.21593 * 120.00171 * 179.69468 * 14 13 12 16 16 N 1.34773 * 120.00417 * 359.68987 * 14 13 12 17 17 C 1.46496 * 120.00329 * 179.97438 * 16 14 13 18 18 C 1.53009 * 109.47457 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.47237 * 180.02562 * 18 17 16 20 20 C 1.38244 * 119.97167 * 89.99910 * 19 18 17 21 21 C 1.38205 * 120.02298 * 180.02562 * 20 19 18 22 22 C 1.38459 * 119.97412 * 0.24026 * 21 20 19 23 23 F 1.35099 * 120.02759 * 179.72396 * 22 21 20 24 24 C 1.38466 * 119.94836 * 359.48301 * 22 21 20 25 25 C 1.38196 * 119.97140 * 0.53984 * 24 22 21 26 26 C 1.47419 * 108.70214 * 358.58553 * 13 12 11 27 27 H 0.97003 * 120.00374 * 359.97438 * 1 2 3 28 28 H 0.96702 * 114.00011 * 297.56689 * 10 9 7 29 29 H 1.08994 * 110.71984 * 271.95552 * 11 9 7 30 30 H 1.08999 * 110.71364 * 35.22699 * 11 9 7 31 31 H 1.08991 * 109.99045 * 218.66856 * 12 11 9 32 32 H 1.09001 * 109.77490 * 97.49594 * 12 11 9 33 33 H 0.97004 * 120.00235 * 0.02562 * 16 14 13 34 34 H 1.09008 * 109.47032 * 60.00398 * 17 16 14 35 35 H 1.09005 * 109.47400 * 300.00454 * 17 16 14 36 36 H 1.08994 * 109.46760 * 60.00165 * 18 17 16 37 37 H 1.09001 * 109.46480 * 300.00262 * 18 17 16 38 38 H 1.07999 * 119.98898 * 0.02589 * 20 19 18 39 39 H 1.08002 * 120.00949 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00962 * 180.25357 * 24 22 21 41 41 H 1.08000 * 119.98525 * 179.74601 * 25 24 22 42 42 H 1.09000 * 110.36410 * 143.19554 * 26 13 12 43 43 H 1.08995 * 110.37089 * 265.40414 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4606 -2.6310 -1.1838 11 6 2.2190 -3.7013 0.1585 12 6 1.3290 -4.7806 0.8104 13 7 0.2063 -4.0871 1.4587 14 6 -0.8065 -4.6806 2.1208 15 8 -1.6824 -4.0044 2.6247 16 7 -0.8485 -6.0237 2.2243 17 6 -1.9491 -6.6688 2.9445 18 6 -1.7582 -8.1866 2.9143 19 6 -2.8907 -8.8502 3.6546 20 6 -4.0398 -9.2134 2.9771 21 6 -5.0793 -9.8215 3.6550 22 6 -4.9715 -10.0625 5.0142 23 9 -5.9893 -10.6519 5.6791 24 6 -3.8179 -9.7036 5.6906 25 6 -2.7799 -9.0952 5.0106 26 6 0.3754 -2.6348 1.2701 27 1 -0.4851 0.8400 0.0004 28 1 -0.2255 -1.9558 -1.2758 29 1 2.5835 -4.0341 -0.8133 30 1 3.0497 -3.4431 0.8153 31 1 1.9008 -5.3358 1.5538 32 1 0.9531 -5.4600 0.0454 33 1 -0.1496 -6.5633 1.8226 34 1 -2.8952 -6.4118 2.4679 35 1 -1.9579 -6.3246 3.9787 36 1 -0.8123 -8.4433 3.3910 37 1 -1.7492 -8.5311 1.8802 38 1 -4.1251 -9.0217 1.9176 39 1 -5.9770 -10.1047 3.1256 40 1 -3.7311 -9.8948 6.7499 41 1 -1.8816 -8.8114 5.5388 42 1 -0.5923 -2.1571 1.1168 43 1 0.8817 -2.1969 2.1302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591893447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:22 Heat of formation + Delta-G solvation = -124.002359 kcal Electronic energy + Delta-G solvation = -26269.683635 eV Core-core repulsion = 22228.044501 eV Total energy + Delta-G solvation = -4041.639133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.90217 -41.23554 -40.17136 -39.09038 -36.37991 -36.00790 -34.21197 -33.43371 -32.07577 -31.67343 -29.63829 -28.93542 -26.85768 -24.73929 -24.00841 -23.75367 -22.14850 -21.43977 -20.91979 -19.23866 -18.79254 -18.60231 -17.46511 -17.37117 -16.92345 -16.88312 -16.59404 -16.35891 -16.11486 -15.65581 -15.54522 -14.98433 -14.80747 -14.65639 -14.55799 -14.42361 -14.05685 -13.79911 -13.58854 -13.49492 -13.25795 -12.80031 -12.61407 -12.58157 -12.48473 -12.36563 -12.30573 -12.23917 -12.05499 -11.84463 -11.31465 -11.15882 -10.64114 -10.31078 -10.17775 -10.04441 -9.54586 -9.28993 -8.22481 -6.39797 0.12072 0.29101 1.44575 1.45102 1.53333 1.72088 2.18718 2.39769 2.59925 3.03509 3.13061 3.31020 3.76963 3.82352 3.87553 3.99815 4.05829 4.13492 4.15128 4.23621 4.36006 4.38845 4.45873 4.60817 4.67143 4.79786 4.89911 4.99690 5.04203 5.10418 5.12707 5.14517 5.17922 5.27440 5.33850 5.41591 5.49232 5.53624 5.58503 5.78181 5.93645 6.08166 6.23471 6.67622 7.11157 7.29651 7.36964 7.61374 8.82318 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032141 B = 0.002092 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.963107 B =13379.449361 C =13659.242664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.708 3.292 15 O -0.648 6.648 16 N -0.728 5.728 17 C 0.145 3.855 18 C -0.076 4.076 19 C -0.094 4.094 20 C -0.089 4.089 21 C -0.159 4.159 22 C 0.071 3.929 23 F -0.152 7.152 24 C -0.158 4.158 25 C -0.087 4.087 26 C 0.128 3.872 27 H 0.268 0.732 28 H 0.372 0.628 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.412 0.588 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.041 0.959 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -21.856 6.650 22.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.410 3.590 15 O -0.531 6.531 16 N -0.385 5.385 17 C 0.021 3.979 18 C -0.113 4.113 19 C -0.095 4.095 20 C -0.107 4.107 21 C -0.178 4.178 22 C 0.052 3.948 23 F -0.131 7.131 24 C -0.177 4.177 25 C -0.105 4.105 26 C 0.004 3.996 27 H 0.077 0.923 28 H 0.220 0.780 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.248 0.752 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.060 0.940 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.551 -21.860 6.988 23.091 hybrid contribution -0.461 1.532 0.184 1.610 sum -3.012 -20.328 7.172 21.766 Atomic orbital electron populations 1.69844 1.07200 1.28388 1.50055 1.25846 0.95735 1.02889 0.93171 0.85524 0.78280 0.78361 0.78959 1.19396 1.21325 1.19448 1.21781 0.93972 0.91244 1.52396 0.91216 1.19876 0.87220 0.93237 0.80588 1.86089 1.51404 1.56770 1.45196 1.22599 0.97201 0.93761 1.01327 1.22138 0.87082 0.95383 0.96884 1.47872 1.24582 1.08572 1.56038 1.15782 0.81157 0.82922 0.79173 1.90856 1.41547 1.64958 1.55727 1.44889 1.29824 1.03323 1.60502 1.21180 0.88545 0.92304 0.95884 1.20698 0.97542 0.90701 1.02384 1.19894 0.95977 0.99375 0.94281 1.21230 0.91858 0.96238 1.01325 1.21367 1.01609 1.02217 0.92589 1.18060 0.86204 0.99169 0.91374 1.91469 1.58651 1.81949 1.81024 1.21377 0.92799 1.01676 1.01849 1.21232 0.99075 0.96465 0.93690 1.22635 0.99972 0.77923 0.99047 0.92251 0.77951 0.89574 0.89321 0.88890 0.90623 0.75154 0.93312 0.92846 0.87866 0.88241 0.83254 0.83568 0.83427 0.82961 0.94003 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 10.69 21.45 0.23 -50.14 16 2 C 0.02 1.28 5.29 84.66 0.45 1.73 16 3 Si 0.96 41.70 29.54 68.60 2.03 43.73 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.56 -28.63 8.27 25.60 0.21 -28.42 16 8 H 0.07 3.45 7.79 -2.91 -0.02 3.42 16 9 C 0.23 11.02 0.87 -10.15 -0.01 11.01 16 10 O -0.59 -29.85 13.16 -148.98 -1.96 -31.81 16 11 C -0.11 -4.01 6.13 31.79 0.19 -3.81 16 12 C 0.11 3.24 6.15 86.73 0.53 3.77 16 13 N -0.63 -25.38 3.33 -829.77 -2.76 -28.14 16 14 C 0.71 28.06 8.49 179.06 1.52 29.58 16 15 O -0.65 -32.34 16.60 -4.01 -0.07 -32.41 16 16 N -0.73 -19.08 5.52 -478.52 -2.64 -21.72 16 17 C 0.14 3.20 5.66 86.38 0.49 3.69 16 18 C -0.08 -0.94 5.46 29.85 0.16 -0.78 16 19 C -0.09 -1.34 5.13 -19.86 -0.10 -1.44 16 20 C -0.09 -1.27 9.70 22.26 0.22 -1.06 16 21 C -0.16 -2.52 10.03 22.31 0.22 -2.29 16 22 C 0.07 1.28 7.30 22.38 0.16 1.44 16 23 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 24 C -0.16 -2.43 10.03 22.31 0.22 -2.21 16 25 C -0.09 -1.19 9.70 22.26 0.22 -0.98 16 26 C 0.13 6.31 5.38 86.86 0.47 6.78 16 27 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.37 20.03 7.56 -74.06 -0.56 19.47 16 29 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.09 2.97 8.03 -2.39 -0.02 2.95 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.41 7.77 7.46 -92.71 -0.69 7.08 16 34 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.10 0.90 8.09 -2.39 -0.02 0.88 16 37 H 0.10 0.95 8.08 -2.39 -0.02 0.94 16 38 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.04 2.40 7.33 -2.39 -0.02 2.38 16 43 H 0.04 1.95 8.03 -2.39 -0.02 1.93 16 Total: -1.00 -70.47 364.62 0.36 -70.12 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.21 Total: 35.67 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 4.96 Total: 17.02 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.17 Total: -100.00 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -2.03 Total: -64.22 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -70.47 0.36 -70.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591893447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.887 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds